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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/pbalign">Debian Med / pbalign</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/e526dae8317855c7b72fc3688022ee15d8106469">e526dae8</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-10-30T14:25:22Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.1</pre>
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<h4>30 changed files:</h4>
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.gitignore
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MANIFEST.in
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<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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bamboo_build.sh
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<a href="#13dcf7321fe64aec05fa8df22bcbc7a4ba8b47b9">
pbalign/__init__.py
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pbalign/bampostservice.py
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pbalign/options.py
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pbalign/pbalignrunner.py
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pbalign/tasks/align_minorvariants.py
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pbalign/tasks/consolidate_alignments.py
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pbalign/tasks/consolidate_alignments_ccs.py
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pbalign/tools/createChemistryHeader.py
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pbalign/tools/extractUnmappedSubreads.py
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pbalign/tools/loadChemistry.py
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pbalign/utils/RgnH5IO.py
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pbalign/utils/fileutil.py
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pbalign/utils/progutil.py
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scripts/ci/build.sh
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scripts/ci/test.sh
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setup.py
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tests/cram/dataset_tiny.t
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tests/cram/sam.t
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tests/unit/test_fileutil.py
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tests/unit/test_options.py
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<a href="#5d7501cb7477f8261bc2aa992a44b2fd490b7193">
tests/unit/test_pbalignfiles.py
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<a href="#9508e2ce3ede1718c15c4611fc5bb0ee1923f44b">
tests/unit/test_referenceInfo.py
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tests/unit/test_tool_contract.py
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tests/unit/test_unrolled.py
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tests/unit_h5/test_repackservice.py
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<h5>The diff was not included because it is too large.</h5>
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