<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbalign">Debian Med / pbalign</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/f94281128ae0d16289d4fcb4a9f959dbfc7fa737">f9428112</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:24:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/e526dae8317855c7b72fc3688022ee15d8106469">e526dae8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:25:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/e944abd36cd5b7dbc10c0bca67a88722ae4ad82f">e944abd3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:25:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.3.1'
Update to upstream version '0.3.1'
with Debian dir 06bf03d0945a565cfd6157976287f30738cd8381</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/ea37e380aee0c2149006db1cc790471df03bf589">ea37e380</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:25:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/5f48304e397f260239c5aaa7007f397a4a35685a">5f48304e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:25:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/181e8fa251428b50550fd2184bdd7e8770fd1534">181e8fa2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:43:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/81ca28d8804148138956ee421823ccce19076752">81ca28d8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:43:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/12d23f3eca57bdcb7e4813f7cb7e32db09f2025f">12d23f3e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:43:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Testsuite: autopkgtest-pkg-python
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/821bb1a5017018d630342c234c145c1084d23ff2">821bb1a5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:43:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/111a9dd15d8ceed84b5fd509375e8b2e456fda7d">111a9dd1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:43:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/f80e164fd014f71e30256ee35ded88b6446ffb29">f80e164f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T14:43:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: s/python-sphinx/python3-sphinx/
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/ddafa4602d945dc0e6a83d7445156db16885536d">ddafa460</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-30T15:25:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">pbalign versioned depends: python-pbalign (= ${source:Version})
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/6fec71200e5a698bd5364387103ff82f9d63357c">6fec7120</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-31T06:44:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt to python-pbcore 1.5.0+git20180606.43fcd9d+dfsg
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/39677d775c0581b2bddcd6d04b308e6cfdaf2996">39677d77</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-31T06:47:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Create manpages before building package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/a954110c90cdb70d5b7172ea2800ef2b06670eb8">a954110c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-31T06:52:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix spelling
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/f863211eee11a39f6d95a64b0c1c03c5c5caf66b">f863211e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-31T06:55:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
<span class="new-file">
+
.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
<span class="new-file">
+
MANIFEST.in
</span>
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#8ab4e94f59343a8b2d003b0b47d21fff1724bfd9">
<span class="new-file">
+
bamboo_build.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#ebcf9854ee19af4b7bf8405b283789c18769680f">
<span class="new-file">
+
debian/createmanpages
</span>
</a>
</li>
<li class="file-stats">
<a href="#68e0b13744e158347bfd74ebaaca667435f07d14">
<span class="new-file">
+
debian/manpages
</span>
</a>
</li>
<li class="file-stats">
<a href="#af326f9d660c0a7ea807b43796999135915b7c34">
<span class="new-file">
+
debian/mans/createChemistryHeader.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#da886bb30ee5d4f6888bd9ebfe54c2a70d20c702">
<span class="new-file">
+
debian/mans/createChemistryHeader.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#2d8c1b203553a929fede2a2c493af9a75e51800a">
<span class="new-file">
+
debian/mans/extractUnmappedSubreads.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#d160c674b47a96c18cefaa4acfabbbac741477a6">
<span class="new-file">
+
debian/mans/extractUnmappedSubreads.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#6c4f6528a6280bceff8392028e73332153afe53b">
<span class="new-file">
+
debian/mans/loadChemistry.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#76d91f3c316c5ad45d9aabfa4a748c3da4a4ebf2">
<span class="new-file">
+
debian/mans/loadChemistry.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#dfc6e1ae150557336f8a63e36345298f397f70e2">
<span class="new-file">
+
debian/mans/maskAlignedReads.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#49265d5cc485fc57208387560e5d60aa6d328d12">
<span class="new-file">
+
debian/mans/maskAlignedReads.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#abd64b01c46031ea599535bee3a439d210ad2719">
<span class="new-file">
+
debian/mans/pbalign.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b1ec281d3093cd47d067ea06a1923dc02f16741">
<span class="new-file">
+
debian/mans/pbalign.py.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#cbf62ab94f1698de4d5fd533122c40bf70e7697a">
<span class="new-file">
+
debian/patches/find_definitions_from_pbcore.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="new-file">
+
debian/patches/series
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#13dcf7321fe64aec05fa8df22bcbc7a4ba8b47b9">
pbalign/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#c5a3b2b97dfac6aefb8f472c2fee2497bda63576">
pbalign/bampostservice.py
</a>
</li>
<li class="file-stats">
<a href="#d8d167b0b40b92254643e591c27fd617a89b6466">
pbalign/options.py
</a>
</li>
<li class="file-stats">
<a href="#dff2fc73d657af37111868736ee4febce9dafe43">
pbalign/pbalignrunner.py
</a>
</li>
<li class="file-stats">
<a href="#919ec3f50e2f2a5496d0a7850fb841ee9f39ce05">
<span class="new-file">
+
pbalign/tasks/align_minorvariants.py
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777777;">
—
<br>
<a href="https://salsa.debian.org/med-team/pbalign/compare/24a9dbe798a54faa9d6c85c0f61bdae886a3a2a1...f863211eee11a39f6d95a64b0c1c03c5c5caf66b">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>