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<h3>
Alexandre Mestiashvili pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/python-multipletau">Debian Med / python-multipletau</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582">b1ffc393</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-11-01T14:08:18Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.0+ds</pre>
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<h4>16 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
CHANGELOG
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
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<li class="file-stats">
<a href="#d298eae19c3b5ca5027369f413424dbfc2fea96a">
docs/extensions/fancy_include.py
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<li class="file-stats">
<a href="#0e249d8bc1246e0338a1a422323afbb20d24701d">
multipletau/__init__.py
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<li class="file-stats">
<a href="#e01ea1b1672dc760f8e3c4fb4ff05a6fb9fa7aa3">
multipletau/_version.py
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<li class="file-stats">
<a href="#77636e37b96618b010efdbbf9307810ed9b5ca15">
multipletau/core.py
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<li class="file-stats">
<a href="#8c91c0296909b5ea3c496fde69e9dc44a6c6ae5f">
setup.cfg
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#d8e1cfacc4846ae9bc4f2c2692c31078e3012596">
tests/test_ac_cc.py
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<li class="file-stats">
<a href="#612169739b53fe84090d735805644073b4c1ed42">
tests/test_autocorrelate.py
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<a href="#dcc9ea38d5e973bf36a3e4234292026ab14c93a2">
tests/test_basic.py
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<a href="#a0d1347eb7403a1424d8991defa75e66aac340c2">
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tests/test_compress.py
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<li class="file-stats">
<a href="#8c5ee757614592c92913c69cc1b20960e844e587">
tests/test_correlate.py
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<li class="file-stats">
<a href="#cdb90477d4bc35b1684c5ad1ad303821ef4ade9d">
tests/test_ref_numpy.py
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<a href="#3d4a58f18fa798878ff912d48e3c1e215398c1b4">
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+
tests/test_ret_sum.py
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<h4>Changes:</h4>
<li id="1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a"><strong>CHANGELOG</strong></a>
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">0.3.0</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> - feat: add option to choose the strategy for propagating values to</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> the next register (#14)</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> - feat: add option to return the pure sum and the internal normalization</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> count (#14)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">0.2.0</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> - tests: filter warnings and check with flake8</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> - implement unique warning classes</span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">0.1.9</span>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> - include docs in sdist</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">0.1.8</span>
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<li id="561b88e19de321ca62c7590bbb350765fb110905">
<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#561b88e19de321ca62c7590bbb350765fb110905"><strong>README.rst</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,7 @@ correlation on a linear scale such as `numpy.correlate <http://docs.scipy.org/do</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Installation</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">------------</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">Multipletau supports Python 2.<span class="idiff left right">6+</span> and Python 3.3+ with a common codebase.</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Multipletau supports Python 2.<span class="idiff left right">7</span> and Python 3.3+ with a common codebase.</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">The only requirement for ``multipletau`` is `NumPy <http://www.numpy.org/>`__ (for fast</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">operations on arrays). Install multipletau from the Python package index:</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,7 +56,7 @@ You can find out what version you are using by typing (in a Python console):</td>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> >>> import multipletau</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> >>> multipletau.__version__</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> '0.<span class="idiff left right">1.4</span>'</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> '0.<span class="idiff left right">3.0</span>'</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -64,7 +64,7 @@ You can find out what version you are using by typing (in a Python console):</td>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> :target: https://pypi.python.org/pypi/multipletau</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext">.. |Tests Status| image:: http://img.shields.io/travis/FCS-analysis/multipletau.svg?label=tests</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> :target: https://travis-ci.org/FCS-analysis/multipletau</span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext">.. |Coverage Status| image:: https://img.shields.io/co<span class="idiff left right">veralls/FCS-analysis/multipletau</span>.svg</span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> :target: https://co<span class="idiff left right">veralls.io/r</span>/FCS-analysis/multipletau</span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext">.. |Coverage Status| image:: https://img.shields.io/co<span class="idiff left right">decov/c/github/FCS-analysis/multipletau/master</span>.svg</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> :target: https://co<span class="idiff left right">decov.io/gh</span>/FCS-analysis/multipletau</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext">.. |Docs Status| image:: https://readthedocs.org/projects/multipletau/badge/?version=latest</span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> :target: https://readthedocs.org/projects/multipletau/builds/</span></pre>
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<li id="254a2da7a740675e537439eb88e32083b9ea4771">
<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#254a2da7a740675e537439eb88e32083b9ea4771"><strong>docs/conf.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/env python3</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># project documentation build configuration file, created by</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,12 +16,7 @@</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># If extensions (or modules to document with autodoc) are in another directory,</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># add these directories to sys.path here. If the directory is relative to the</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># documentation root, use os.path.abspath to make it absolute, like shown here.</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># import os</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># import sys</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># sys.path.insert(0, os.path.abspath('.'))</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Get version number from qpimage._version file</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">mock</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os.path</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">op</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,12 +32,18 @@ install_requires = ["numpy"]</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"><span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">mod_name</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">install_requires</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">modules</span><span class="p">[</span><span class="n" style="color: #333;">mod_name</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">mock</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Mock</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># There should be a file "setup.py" that has the property "version"</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">setup</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">author</span><span class="p">,</span> <span class="n" style="color: #333;">authors</span><span class="p">,</span> <span class="n" style="color: #333;">description</span><span class="p">,</span> <span class="n" style="color: #333;">name</span><span class="p">,</span> <span class="n" style="color: #333;">version</span><span class="p">,</span> <span class="n" style="color: #333;">year</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'multipletau'</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"><span class="n" style="color: #333;">github_project</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'FCS-analysis/'</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">name</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"><span class="n" style="color: #333;">year</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"2012"</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"><span class="n" style="color: #333;">author</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'Paul Müller'</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"><span class="n" style="color: #333;">authors</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">author</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'A multiple-tau algorithm for Python/NumPy'</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"><span class="n" style="color: #333;">projectname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">name</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"><span class="n" style="color: #333;">projectdescription</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">description</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"><span class="k" style="font-weight: 600;">exec</span><span class="p">(</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">op</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">pdir</span><span class="p">,</span> <span class="s" style="color: #d14;">"multipletau/_version.py"</span><span class="p">))</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">read</span><span class="p">())</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"><span class="n" style="color: #333;">release</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">version</span> <span class="c1" style="color: #998; font-style: italic;">#@UndefinedVariable</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># http://www.sphinx-doc.org/en/stable/ext/autodoc.html#confval-autodoc_member_order</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Order class attributes and functions in separate blocks</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="python"><span class="n" style="color: #333;">autodoc_member_order</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'bysource'</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,7 +96,7 @@ copyright = year+", "+author</td>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The short X.Y version.</span></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The full version, including alpha/beta/rc tags.</span></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="python"><span class="n" style="color: #333;">release</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">version</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right">#</span>release = version</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># The language for content autogenerated by Sphinx. Refer to documentation</span></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># for a list of supported languages.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -275,7 +277,7 @@ man_pages = [</td>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># (source start file, target name, title, author,</span></span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># dir menu entry, description, category)</span></span>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="python"><span class="n" style="color: #333;">texinfo_documents</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span></span>
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'index'</span><span class="p">,</span> <span class="n" style="color: #333;">projectname</span><span class="p">,</span> <span class="n" style="color: #333;">projectname</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;"><span class="idiff left right">u</span>' Documentation'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="python"> <span class="p">(</span><span class="s" style="color: #d14;">'index'</span><span class="p">,</span> <span class="n" style="color: #333;">projectname</span><span class="p">,</span> <span class="n" style="color: #333;">projectname</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">' Documentation'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="python"> <span class="n" style="color: #333;">author</span><span class="p">,</span> <span class="n" style="color: #333;">projectname</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="python"> <span class="n" style="color: #333;">projectdescription</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="python"> <span class="s" style="color: #d14;">'Numeric'</span><span class="p">),</span></span>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#d298eae19c3b5ca5027369f413424dbfc2fea96a"><strong>docs/extensions/fancy_include.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,14 +47,19 @@ class IncludeDirective(Directive):</td>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">io</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">full_path</span><span class="p">,</span> <span class="s" style="color: #d14;">"r"</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">myfile</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">text</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myfile</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># add reference</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"> <span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">op</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">basename</span><span class="p">(</span><span class="n" style="color: #333;">full_path</span><span class="p">)[:</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"> <span class="n" style="color: #333;">rst</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">".. _example_{}:"</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">name</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"> <span class="s" style="color: #d14;">""</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># add docstring</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"> <span class="n" style="color: #333;">source</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">text</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">'"""'</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="n" style="color: #333;">doc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">source</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="s" style="color: #d14;">"~"</span> <span class="o" style="font-weight: 600;">*</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">doc</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]))</span> <span class="c1" style="color: #998; font-style: italic;"># make title heading</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"> <span class="n" style="color: #333;">code</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">source</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># documentation</span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="python"> <span class="n" style="color: #333;">rst</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">line</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">doc</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"> <span class="n" style="color: #333;">rst</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">line</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"></span>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#0e249d8bc1246e0338a1a422323afbb20d24701d"><strong>multipletau/__init__.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,7 +51,7 @@ You can find out what version you are using by typing</td>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"><span class="s" style="color: #d14;"> >>> import multipletau</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"><span class="s" style="color: #d14;"> >>> multipletau.__version__</span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="python"><span class="s" style="color: #d14;"> '0.<span class="idiff left right">1.4</span>'</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"><span class="s" style="color: #d14;"> '0.<span class="idiff left right">3.0</span>'</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"><span class="s" style="color: #d14;">Usage</span></span>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#e01ea1b1672dc760f8e3c4fb4ff05a6fb9fa7aa3"><strong>multipletau/_version.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,8 +44,11 @@ if True: # pragma: no cover</td>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"> <span class="n" style="color: #333;">env</span><span class="p">[</span><span class="s" style="color: #d14;">'LANGUAGE'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'C'</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">env</span><span class="p">[</span><span class="s" style="color: #d14;">'LANG'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'C'</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"> <span class="n" style="color: #333;">env</span><span class="p">[</span><span class="s" style="color: #d14;">'LC_ALL'</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'C'</span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="python"> <span class="n" style="color: #333;">cmd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Popen</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="n" style="color: #333;">stdout</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">,</span> <span class="n" style="color: #333;">env</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">env</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">communicate</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="n" style="color: #333;">pop</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">subprocess</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Popen</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">stdout</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="n" style="color: #333;">stderr</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">subprocess</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">PIPE</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="n" style="color: #333;">env</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">env</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"> <span class="n" style="color: #333;">out</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pop</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">communicate</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">out</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># change directory</span></span>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#77636e37b96618b010efdbbf9307810ed9b5ca15"><strong>multipletau/core.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,8 +41,16 @@ import warnings</td>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"><span class="n" style="color: #333;">__all__</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">"autocorrelate"</span><span class="p">,</span> <span class="s" style="color: #d14;">"correlate"</span><span class="p">,</span> <span class="s" style="color: #d14;">"correlate_numpy"</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">DtypeWarning</span><span class="p">(</span><span class="nb" style="color: #0086b3;">UserWarning</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">InvalidMWarning</span><span class="p">(</span><span class="nb" style="color: #0086b3;">UserWarning</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"average"</span><span class="p">,</span> <span class="n" style="color: #333;">ret_sum</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python"><span class="s" style="color: #d14;"> Autocorrelation of a 1-dimensional sequence on a log2-scale.</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,36 +60,58 @@ def autocorrelate(a, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"><span class="s" style="color: #d14;"> :func:`numpy.correlate(a, a, mode="full")[len(a)-1:]`</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="python"><span class="s" style="color: #d14;"> :math:`z_k = </span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">Sigma_n a_n a_{n+k}`</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"><span class="s" style="color: #d14;"> :math:`z_k = </span><span class="se" style="color: #d14;">\<span class="idiff left right">\</span></span><span class="s" style="color: #d14;">Sigma_n a_n a_{n+k}`</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="python"><span class="s" style="color: #d14;"> a<span class="idiff left right"> </span>: array-like</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"><span class="s" style="color: #d14;"> a: array-like</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="python"><span class="s" style="color: #d14;"> input sequence</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="python"><span class="s" style="color: #d14;"> m<span class="idiff left right"> </span>: even integer</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"><span class="s" style="color: #d14;"> m: even integer</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"><span class="s" style="color: #d14;"> defines the number of points on one level, must be an</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"><span class="s" style="color: #d14;"> even integer</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="python"><span class="s" style="color: #d14;"> deltat<span class="idiff left right"> </span>: float</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"><span class="s" style="color: #d14;"> deltat: float</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"><span class="s" style="color: #d14;"> distance between bins</span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="python"><span class="s" style="color: #d14;"> normalize<span class="idiff left right"> </span>: bool</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"><span class="s" style="color: #d14;"> normalize: bool</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"><span class="s" style="color: #d14;"> normalize the result to the square of the average input</span></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="python"><span class="s" style="color: #d14;"> signal and the factor :math:`M-k`.</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="python"><span class="s" style="color: #d14;"> copy<span class="idiff left right"> </span>: bool</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"><span class="s" style="color: #d14;"> copy: bool</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"><span class="s" style="color: #d14;"> copy input array, set to ``False`` to save memory</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="python"><span class="s" style="color: #d14;"> dtype<span class="idiff left right"> </span>: object to be converted to a data type object</span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"><span class="s" style="color: #d14;"> dtype: object to be converted to a data type object</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="python"><span class="s" style="color: #d14;"> The data type of the returned array and of the accumulator</span></span>
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="python"><span class="s" style="color: #d14;"> for the multiple-tau computation.</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"><span class="s" style="color: #d14;"> compress: str</span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"><span class="s" style="color: #d14;"> strategy for propagating values to the next register</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"><span class="s" style="color: #d14;"> - `"average"` (default): average two measurements when pushing</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"><span class="s" style="color: #d14;"> to the next level of the correlator.</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"><span class="s" style="color: #d14;"> - `"first"`: use only the first value when pushing to the next</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"><span class="s" style="color: #d14;"> level of the correlator.</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="python"><span class="s" style="color: #d14;"> - `"second"`: use only the second value when pushing to the</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="python"><span class="s" style="color: #d14;"> next level of the correlator.</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="python"><span class="s" style="color: #d14;"> Using only the first or the second values during propagation</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="python"><span class="s" style="color: #d14;"> completely removes the systematic error at the cost of</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"><span class="s" style="color: #d14;"> increasing the statistical error.</span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="python"><span class="s" style="color: #d14;"> See https://doi.org/10.1063/1.3491098 for a discussion on the</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"><span class="s" style="color: #d14;"> effect of averaging.</span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"><span class="s" style="color: #d14;"> ret_sum: bool</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"><span class="s" style="color: #d14;"> return the exact sum :math:`z_k = </span><span class="se" style="color: #d14;">\\</span><span class="s" style="color: #d14;">Sigma_n a_n a_{n+k}`. In addition</span></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"><span class="s" style="color: #d14;"> :math:`M-k` is returned as an array of length N.</span></span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="python"><span class="s" style="color: #d14;"> Returns</span></span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="python"><span class="s" style="color: #d14;"> -------</span></span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="python"><span class="s" style="color: #d14;"> autocorrelation<span class="idiff left right"> </span>: ndarray of shape (N,2)</span></span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"><span class="s" style="color: #d14;"> autocorrelation: ndarray of shape (N,2)</span></span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="python"><span class="s" style="color: #d14;"> the lag time (1st column) and the autocorrelation (2nd column).</span></span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"><span class="s" style="color: #d14;"> count: ndarray of length N</span></span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"><span class="s" style="color: #d14;"> only returned if `ret_sum` is True; the value of :math:`M-k`</span></span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"><span class="s" style="color: #d14;"> for each row in `autocorrelation`.</span></span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="python"><span class="s" style="color: #d14;"> Notes</span></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="python"><span class="s" style="color: #d14;"> -----</span></span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="python"><span class="s" style="color: #d14;"> .. versionchanged<span class="idiff left right"> </span>:: 0.1.6</span></span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="python"><span class="s" style="color: #d14;"> .. versionchanged:: 0.1.6</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="python"><span class="s" style="color: #d14;"> Compute the correlation for zero lag time.</span></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"><span class="s" style="color: #d14;"> The algorithm computes the correlation with the convention of the</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -89,10 +119,10 @@ def autocorrelate(a, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="python"><span class="s" style="color: #d14;"> For experiments like e.g. fluorescence correlation spectroscopy,</span></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="python"><span class="s" style="color: #d14;"> the signal can be normalized to :math:`M-k`</span></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="python"><span class="s" style="color: #d14;"> by invoking ``normalize<span class="idiff left right"> = </span>True``.</span></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"><span class="s" style="color: #d14;"> by invoking ``normalize<span class="idiff left right">=</span>True``.</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="python"><span class="s" style="color: #d14;"> For normalizing according to the behavior</span></span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="python"><span class="s" style="color: #d14;"> of :py:func:`numpy.correlate`, use ``normalize<span class="idiff left right"> = </span>False``.</span></span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="python"><span class="s" style="color: #d14;"> of :py:func:`numpy.correlate`, use ``normalize<span class="idiff left right">=</span>False``.</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="python"><span class="s" style="color: #d14;"> For complex arrays, this method falls back to the method</span></span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="python"><span class="s" style="color: #d14;"> :func:`correlate`.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,6 +140,13 @@ def autocorrelate(a, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">copy</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">bool</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">normalize</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">bool</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python"> <span class="n" style="color: #333;">msg</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"'normalize' and 'ret_sum' must not both be true"</span></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="p">(</span><span class="n" style="color: #333;">normalize</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ret_sum</span><span class="p">),</span> <span class="n" style="color: #333;">msg</span></span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python"></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="python"> <span class="n" style="color: #333;">compress_values</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">"average"</span><span class="p">,</span> <span class="s" style="color: #d14;">"first"</span><span class="p">,</span> <span class="s" style="color: #d14;">"second"</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">any</span><span class="p">(</span><span class="n" style="color: #333;">compress</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">s</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">s</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">compress_values</span><span class="p">),</span> \</span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"> <span class="s" style="color: #d14;">"Unvalid string of compress. Possible values are "</span> <span class="o" style="font-weight: 600;">+</span> \</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="python"> <span class="s" style="color: #d14;">','</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">compress_values</span><span class="p">)</span></span>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dtype</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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115
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">__class__</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -127,7 +164,8 @@ def autocorrelate(a, m=16, deltat=1, normalize=False,</td>
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127
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">copy</span><span class="p">,</span></span>
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128
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">dtype</span><span class="p">)</span></span>
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129
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">kind</span> <span class="o" style="font-weight: 600;">!=</span> <span class="s" style="color: #d14;">"f"</span><span class="p">:</span></span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Input dtype is not float; casting to np.float_!"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Input dtype is not float; casting to np.float_!"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="python"> <span class="n" style="color: #333;">DtypeWarning</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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132
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># If copy is false and dtype is the same as the input array,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,7 +177,7 @@ def autocorrelate(a, m=16, deltat=1, normalize=False,</td>
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139
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="python"> <span class="n" style="color: #333;">mold</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span></span>
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140
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="python"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int_</span><span class="p">((</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">//</span> <span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">2</span><span class="p">)</span></span>
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141
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Invalid value of m={}. Using m={} instead"</span></span>
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142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="python"> <span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">mold</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="p">))</span></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="python"> <span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">mold</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="p">)<span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">InvalidMWarning</span></span><span class="p">)</span></span>
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143
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="python"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int_</span><span class="p">(</span><span class="n" style="color: #333;">m</span><span class="p">)</span></span>
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145
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -184,8 +222,13 @@ def autocorrelate(a, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Check if len(trace) is even:</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-=</span> <span class="mi" style="color: #099;">1</span></span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Add up every second element</span></span>
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># compress every second element</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">//=</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Start iteration for each m/2 values</span></span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">step</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -226,20 +269,29 @@ def autocorrelate(a, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Check if len(trace) is even:</span></span>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-=</span> <span class="mi" style="color: #099;">1</span></span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Add up every second element</span></span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># compress every second element</span></span>
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="python"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">//=</span> <span class="mi" style="color: #099;">2</span></span>
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281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="python"></span>
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282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">normalize</span><span class="p">:</span></span>
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234
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">[:,</span> <span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">/=</span> <span class="n" style="color: #333;">traceavg</span><span class="o" style="font-weight: 600;">**</span><span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">normstat</span></span>
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235
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="python"> <span class="k" style="font-weight: 600;">el<span class="idiff left right">se</span></span><span class="p">:</span></span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="python"> <span class="k" style="font-weight: 600;">el<span class="idiff left">if</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">not</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">ret_sum</span></span><span class="p">:</span></span>
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285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">[:,</span> <span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">*=</span> <span class="n" style="color: #333;">N0</span> <span class="o" style="font-weight: 600;">/</span> <span class="n" style="color: #333;">normnump</span></span>
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237
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286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span></span>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ret_sum</span><span class="p">:</span></span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">normstat</span></span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span></span>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="python"> <span class="n" style="color: #333;">co<span class="idiff left">py</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="bp" style="color: #999;"><span class="idiff">True</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">dtype</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">Non</span>e</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">copy</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="bp" style="color: #999;"><span class="idiff">True</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">dtype</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="bp" style="color: #999;"><span class="idiff">None</span></span><span class="p"><span class="idiff right">,</span></span></span>
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="python"> <span class="n" style="color: #333;">co<span class="idiff left">mpress</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s" style="color: #d14;"><span class="idiff">"average"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ret_sum</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">Fals</span>e</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="python"><span class="s" style="color: #d14;"> Cross-correlation of two 1-dimensional sequences</span></span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="python"><span class="s" style="color: #d14;"> on a log2-scale.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -250,7 +302,7 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="python"><span class="s" style="color: #d14;"> :func:`numpy.correlate(a, v, mode="full")[len(a)-1:]`</span></span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="python"><span class="s" style="color: #d14;"> :math:`z_k = </span><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span><span class="s" style="color: #d14;">Sigma_n a_n v_{n+k}`</span></span>
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="python"><span class="s" style="color: #d14;"> :math:`z_k = </span><span class="se" style="color: #d14;">\<span class="idiff left right">\</span></span><span class="s" style="color: #d14;">Sigma_n a_n v_{n+k}`</span></span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="python"><span class="s" style="color: #d14;"> Note that only the correlation in the positive direction is</span></span>
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="python"><span class="s" style="color: #d14;"> computed. To obtain the correlation for negative lag times</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -258,32 +310,53 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="python"><span class="s" style="color: #d14;"> a, v<span class="idiff left right"> </span>: array-like</span></span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="python"><span class="s" style="color: #d14;"> a, v: array-like</span></span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="python"><span class="s" style="color: #d14;"> input sequences with equal length</span></span>
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="python"><span class="s" style="color: #d14;"> m<span class="idiff left right"> </span>: even integer</span></span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="python"><span class="s" style="color: #d14;"> m: even integer</span></span>
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="python"><span class="s" style="color: #d14;"> defines the number of points on one level, must be an</span></span>
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="python"><span class="s" style="color: #d14;"> even integer</span></span>
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="python"><span class="s" style="color: #d14;"> deltat<span class="idiff left right"> </span>: float</span></span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="python"><span class="s" style="color: #d14;"> deltat: float</span></span>
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="python"><span class="s" style="color: #d14;"> distance between bins</span></span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="python"><span class="s" style="color: #d14;"> normalize<span class="idiff left right"> </span>: bool</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="python"><span class="s" style="color: #d14;"> normalize: bool</span></span>
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="python"><span class="s" style="color: #d14;"> normalize the result to the square of the average input</span></span>
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="python"><span class="s" style="color: #d14;"> signal and the factor :math:`M-k`.</span></span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="python"><span class="s" style="color: #d14;"> copy<span class="idiff left right"> </span>: bool</span></span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="python"><span class="s" style="color: #d14;"> copy: bool</span></span>
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<pre style="margin: 0;"> <span id="LC324" class="line" lang="python"><span class="s" style="color: #d14;"> copy input array, set to ``False`` to save memory</span></span>
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="python"><span class="s" style="color: #d14;"> dtype<span class="idiff left right"> </span>: object to be converted to a data type object</span></span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="python"><span class="s" style="color: #d14;"> dtype: object to be converted to a data type object</span></span>
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<pre style="margin: 0;"> <span id="LC326" class="line" lang="python"><span class="s" style="color: #d14;"> The data type of the returned array and of the accumulator</span></span>
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<pre style="margin: 0;"> <span id="LC327" class="line" lang="python"><span class="s" style="color: #d14;"> for the multiple-tau computation.</span></span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="python"><span class="s" style="color: #d14;"> compress: str</span></span>
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329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="python"><span class="s" style="color: #d14;"> strategy for propagating values to the next register</span></span>
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="python"><span class="s" style="color: #d14;"> - `"average"` (default): average two measurements when pushing</span></span>
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="python"><span class="s" style="color: #d14;"> to the next level of the correlator.</span></span>
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="python"><span class="s" style="color: #d14;"> - `"first"`: use only the first value when pushing to the next</span></span>
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="python"><span class="s" style="color: #d14;"> level of the correlator.</span></span>
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="python"><span class="s" style="color: #d14;"> - `"second"`: use only the second value when pushing to the</span></span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="python"><span class="s" style="color: #d14;"> next level of the correlator.</span></span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="python"><span class="s" style="color: #d14;"> Using only the first or the second values during propagation</span></span>
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="python"><span class="s" style="color: #d14;"> completely removes the systematic error at the cost of</span></span>
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="python"><span class="s" style="color: #d14;"> increasing the statistical error.</span></span>
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="python"><span class="s" style="color: #d14;"> See https://doi.org/10.1063/1.3491098 for a discussion on the</span></span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="python"><span class="s" style="color: #d14;"> effect of averaging.</span></span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="python"><span class="s" style="color: #d14;"> ret_sum: bool</span></span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="python"><span class="s" style="color: #d14;"> return the exact sum :math:`z_k = </span><span class="se" style="color: #d14;">\\</span><span class="s" style="color: #d14;">Sigma_n a_n v_{n+k}`. In addition</span></span>
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="python"><span class="s" style="color: #d14;"> :math:`M-k` is returned as an array of length N.</span></span>
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC348" class="line" lang="python"><span class="s" style="color: #d14;"> Returns</span></span>
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349
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="python"><span class="s" style="color: #d14;"> -------</span></span>
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="python"><span class="s" style="color: #d14;"> cross_correlation : ndarray of shape (N,2)</span></span>
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="python"><span class="s" style="color: #d14;"> the lag time (column 1) and the cross-correlation (column2).</span></span>
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="python"><span class="s" style="color: #d14;"> cross_correlation: ndarray of shape (N,2)</span></span>
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="python"><span class="s" style="color: #d14;"> the lag time (1st column), the cross-correlation (2nd column).</span></span>
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="python"><span class="s" style="color: #d14;"> count: ndarray of length N</span></span>
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="python"><span class="s" style="color: #d14;"> only returned if `ret_sum` is True; the value of :math:`M-k`</span></span>
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="python"><span class="s" style="color: #d14;"> for each row in `autocorrelation`.</span></span>
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<pre style="margin: 0;"> <span id="LC355" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC356" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC357" class="line" lang="python"><span class="s" style="color: #d14;"> Notes</span></span>
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<pre style="margin: 0;"> <span id="LC358" class="line" lang="python"><span class="s" style="color: #d14;"> -----</span></span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="python"><span class="s" style="color: #d14;"> .. versionchanged<span class="idiff left right"> </span>:: 0.1.6</span></span>
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="python"><span class="s" style="color: #d14;"> .. versionchanged:: 0.1.6</span></span>
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<pre style="margin: 0;"> <span id="LC360" class="line" lang="python"><span class="s" style="color: #d14;"> Compute the correlation for zero lag time and correctly</span></span>
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<pre style="margin: 0;"> <span id="LC361" class="line" lang="python"><span class="s" style="color: #d14;"> normalize the correlation for a complex input sequence `v`.</span></span>
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -292,10 +365,10 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC365" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC366" class="line" lang="python"><span class="s" style="color: #d14;"> For experiments like e.g. fluorescence correlation spectroscopy,</span></span>
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<pre style="margin: 0;"> <span id="LC367" class="line" lang="python"><span class="s" style="color: #d14;"> the signal can be normalized to :math:`M-k`</span></span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="python"><span class="s" style="color: #d14;"> by invoking ``normalize<span class="idiff left right"> = </span>True``.</span></span>
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="python"><span class="s" style="color: #d14;"> by invoking ``normalize<span class="idiff left right">=</span>True``.</span></span>
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<pre style="margin: 0;"> <span id="LC369" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC370" class="line" lang="python"><span class="s" style="color: #d14;"> For normalizing according to the behavior of</span></span>
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="python"><span class="s" style="color: #d14;"> :py:func:`numpy.correlate`, use ``normalize<span class="idiff left right"> = </span>False``.</span></span>
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="python"><span class="s" style="color: #d14;"> :py:func:`numpy.correlate`, use ``normalize<span class="idiff left right">=</span>False``.</span></span>
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<pre style="margin: 0;"> <span id="LC372" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC373" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC374" class="line" lang="python"><span class="s" style="color: #d14;"> Examples</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -311,6 +384,14 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">copy</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">bool</span><span class="p">)</span></span>
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313
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">isinstance</span><span class="p">(</span><span class="n" style="color: #333;">normalize</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">bool</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="python"> <span class="n" style="color: #333;">msg</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"'normalize' and 'ret_sum' must not both be true"</span></span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="p">(</span><span class="n" style="color: #333;">normalize</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">ret_sum</span><span class="p">),</span> <span class="n" style="color: #333;">msg</span></span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="python"> <span class="n" style="color: #333;">compress_values</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">"average"</span><span class="p">,</span> <span class="s" style="color: #d14;">"first"</span><span class="p">,</span> <span class="s" style="color: #d14;">"second"</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="nb" style="color: #0086b3;">any</span><span class="p">(</span><span class="n" style="color: #333;">compress</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">s</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">s</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">compress_values</span><span class="p">),</span> \</span>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="python"> <span class="s" style="color: #d14;">"Unvalid string of compress. Possible values are "</span> <span class="o" style="font-weight: 600;">+</span> \</span>
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="python"> <span class="s" style="color: #d14;">','</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">compress_values</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC395" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># See `autocorrelation` for better documented code.</span></span>
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="python"> <span class="n" style="color: #333;">traceavg1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">average</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="python"> <span class="n" style="color: #333;">traceavg2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">average</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -325,16 +406,19 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC406" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">kind</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"c"</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">dtype2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">kind</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"c"</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># The user might try to combine complex64 and float128.</span></span>
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408
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC328" class="line" lang="python"> <span class="s" style="color: #d14;">"Input dtypes not equal; casting to np.complex_!"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="python"> <span class="s" style="color: #d14;">"Input dtypes not equal; casting to np.complex_!"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="python"> <span class="n" style="color: #333;">InvalidMWarning</span><span class="p">)</span></span>
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411
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Input dtypes not equal; casting to np.float_!"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Input dtypes not equal; casting to np.float_!"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="python"> <span class="n" style="color: #333;">InvalidMWarning</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC415" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC416" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">dtype</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC418" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC419" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">kind</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="s" style="color: #d14;">"c"</span><span class="p">,</span> <span class="s" style="color: #d14;">"f"</span><span class="p">]:</span></span>
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Input dtype is not float; casting to np.float_!"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Input dtype is not float; casting to np.float_!"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="python"> <span class="n" style="color: #333;">InvalidMWarning</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC423" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC424" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">copy</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -357,7 +441,7 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC441" class="line" lang="python"> <span class="n" style="color: #333;">mold</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m</span></span>
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<pre style="margin: 0;"> <span id="LC442" class="line" lang="python"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int_</span><span class="p">(</span><span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">//</span> <span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;"> <span id="LC443" class="line" lang="python"> <span class="n" style="color: #333;">warnings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">warn</span><span class="p">(</span><span class="s" style="color: #d14;">"Invalid value of m={}. Using m={} instead"</span></span>
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="python"> <span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">mold</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="python"> <span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">format</span><span class="p">(</span><span class="n" style="color: #333;">mold</span><span class="p">,</span> <span class="n" style="color: #333;">m</span><span class="p">)<span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">InvalidMWarning</span></span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC445" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC446" class="line" lang="python"> <span class="n" style="color: #333;">m</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int_</span><span class="p">(</span><span class="n" style="color: #333;">m</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC447" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -394,9 +478,16 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Check if len(trace) is even:</span></span>
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<pre style="margin: 0;"> <span id="LC479" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC480" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-=</span> <span class="mi" style="color: #099;">1</span></span>
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Add up every second element</span></span>
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace1</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace1</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace2</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace2</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># compress every second element</span></span>
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace1</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace1</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace2</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace2</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace1</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace2</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace1</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace2</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC491" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">//=</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;"> <span id="LC492" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC493" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">step</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">):</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -420,17 +511,27 @@ def correlate(a, v, m=16, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC511" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Check if len(trace) is even:</span></span>
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">2</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-=</span> <span class="mi" style="color: #099;">1</span></span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Add up every second element</span></span>
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace1</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace1</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace2</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace2</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># compress every second element</span></span>
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace1</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace1</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">trace2</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">trace2</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace1</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace2</span><span class="p">[:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="python"> <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">compress</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">compress_values</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="python"> <span class="n" style="color: #333;">trace1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace1</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="python"> <span class="n" style="color: #333;">trace2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace2</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">:</span><span class="n" style="color: #333;">N</span><span class="p">:</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC524" class="line" lang="python"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">//=</span> <span class="mi" style="color: #099;">2</span></span>
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<pre style="margin: 0;"> <span id="LC525" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC526" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">normalize</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC527" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">[:,</span> <span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">/=</span> <span class="n" style="color: #333;">traceavg1</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">traceavg2</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">normstat</span></span>
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="python"> <span class="k" style="font-weight: 600;">el<span class="idiff left right">se</span></span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="python"> <span class="k" style="font-weight: 600;">el<span class="idiff left">if</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">not</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">ret_sum</span></span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC529" class="line" lang="python"> <span class="n" style="color: #333;">G</span><span class="p">[:,</span> <span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">*=</span> <span class="n" style="color: #333;">N0</span> <span class="o" style="font-weight: 600;">/</span> <span class="n" style="color: #333;">normnump</span></span>
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<pre style="margin: 0;"> <span id="LC530" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span></span>
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ret_sum</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span><span class="p">,</span> <span class="n" style="color: #333;">normstat</span></span>
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span></span>
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<pre style="margin: 0;"> <span id="LC535" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC536" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC537" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">correlate_numpy</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="p">,</span> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -442,29 +543,29 @@ def correlate_numpy(a, v, deltat=1, normalize=False,</td>
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<pre style="margin: 0;"> <span id="LC543" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC544" class="line" lang="python"><span class="s" style="color: #d14;"> Parameters</span></span>
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<pre style="margin: 0;"> <span id="LC545" class="line" lang="python"><span class="s" style="color: #d14;"> ----------</span></span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="python"><span class="s" style="color: #d14;"> a, v<span class="idiff left right"> </span>: array-like</span></span>
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="python"><span class="s" style="color: #d14;"> a, v: array-like</span></span>
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="python"><span class="s" style="color: #d14;"> input sequences</span></span>
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="python"><span class="s" style="color: #d14;"> deltat<span class="idiff left right"> </span>: float</span></span>
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="python"><span class="s" style="color: #d14;"> deltat: float</span></span>
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="python"><span class="s" style="color: #d14;"> distance between bins</span></span>
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="python"><span class="s" style="color: #d14;"> normalize<span class="idiff left right"> </span>: bool</span></span>
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="python"><span class="s" style="color: #d14;"> normalize: bool</span></span>
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<pre style="margin: 0;"> <span id="LC551" class="line" lang="python"><span class="s" style="color: #d14;"> normalize the result to the square of the average input signal</span></span>
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<pre style="margin: 0;"> <span id="LC552" class="line" lang="python"><span class="s" style="color: #d14;"> and the factor :math:`M-k`. The resulting curve follows</span></span>
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<pre style="margin: 0;"> <span id="LC553" class="line" lang="python"><span class="s" style="color: #d14;"> the convention of decaying to zero for large lag times.</span></span>
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="python"><span class="s" style="color: #d14;"> copy<span class="idiff left right"> </span>: bool</span></span>
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="python"><span class="s" style="color: #d14;"> copy: bool</span></span>
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<pre style="margin: 0;"> <span id="LC555" class="line" lang="python"><span class="s" style="color: #d14;"> copy input array, set to ``False`` to save memory</span></span>
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="python"><span class="s" style="color: #d14;"> dtype<span class="idiff left right"> </span>: object to be converted to a data type object</span></span>
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="python"><span class="s" style="color: #d14;"> dtype: object to be converted to a data type object</span></span>
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<pre style="margin: 0;"> <span id="LC557" class="line" lang="python"><span class="s" style="color: #d14;"> The data type of the returned array.</span></span>
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<pre style="margin: 0;"> <span id="LC558" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC559" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC560" class="line" lang="python"><span class="s" style="color: #d14;"> Returns</span></span>
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<pre style="margin: 0;"> <span id="LC561" class="line" lang="python"><span class="s" style="color: #d14;"> -------</span></span>
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<pre style="margin: 0;">-<span id="LC461" class="line" lang="python"><span class="s" style="color: #d14;"> cross_correlation<span class="idiff left right"> </span>: ndarray of shape (N,2)</span></span>
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="python"><span class="s" style="color: #d14;"> cross_correlation: ndarray of shape (N,2)</span></span>
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<pre style="margin: 0;"> <span id="LC563" class="line" lang="python"><span class="s" style="color: #d14;"> the lag time (column 1) and the cross-correlation (column 2).</span></span>
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<pre style="margin: 0;"> <span id="LC564" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC565" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC566" class="line" lang="python"><span class="s" style="color: #d14;"> Notes</span></span>
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<pre style="margin: 0;"> <span id="LC567" class="line" lang="python"><span class="s" style="color: #d14;"> -----</span></span>
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="python"><span class="s" style="color: #d14;"> .. versionchanged<span class="idiff left right"> </span>:: 0.1.6</span></span>
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="python"><span class="s" style="color: #d14;"> .. versionchanged:: 0.1.6</span></span>
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<pre style="margin: 0;"> <span id="LC569" class="line" lang="python"><span class="s" style="color: #d14;"> Removed false normalization when `normalize==False`.</span></span>
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<pre style="margin: 0;"> <span id="LC570" class="line" lang="python"><span class="s" style="color: #d14;"> """</span></span>
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<pre style="margin: 0;"> <span id="LC571" class="line" lang="python"> <span class="n" style="color: #333;">ab</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">dtype</span><span class="p">,</span> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">copy</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#8c91c0296909b5ea3c496fde69e9dc44a6c6ae5f"><strong>setup.cfg</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,7 @@ test = pytest</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">[bdist_wheel]</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">universal = 1</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">[metadata]</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">license_file = LICENSE</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,36 +7,36 @@ import sys</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"><span class="n" style="color: #333;">author</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">u"Paul Müller"</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"><span class="n" style="color: #333;">authors</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">author</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'A multiple-tau algorithm for Python/NumPy<span class="idiff left right">.</span>'</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'A multiple-tau algorithm for Python/NumPy'</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="n" style="color: #333;">name</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'multipletau'</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="python"><span class="n" style="color: #333;">year</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"201<span class="idiff left right">3</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"><span class="n" style="color: #333;">year</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"201<span class="idiff left right">2</span>"</span></span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"><span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">realpath</span><span class="p">(</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">))</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"/"</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">name</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">_version</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">version</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="python"><span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">__name__</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">"__main__"</span></span><span class="p"><span class="idiff right">:</span></span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"><span class="idiff left right"> </span><span class="n" style="color: #333;">setup</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">name</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">author</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">author</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">author_email</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'dev@craban.de'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">url</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'https://github.com/FCS-analysis/multipletau'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">version</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">version</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">packages</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="n" style="color: #333;">name</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">package_dir</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="n" style="color: #333;">name</span><span class="p">:</span> <span class="n" style="color: #333;">name</span><span class="p">},</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">license</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"BSD (3 clause)"</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">description</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">long_description</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="s" style="color: #d14;">'README.rst'</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="s" style="color: #d14;">'README.rst'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">else</span> <span class="s" style="color: #d14;">''</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">install_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"numpy >= 1.5.1"</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">keywords</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"multiple tau"</span><span class="p">,</span> <span class="s" style="color: #d14;">"fluorescence correlation spectroscopy"</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">setup_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'pytest-runner'</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">tests_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"pytest"</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">classifiers</span><span class="o" style="font-weight: 600;">=</span> <span class="p">[</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="python"> <span class="idiff left right"> </span><span class="s" style="color: #d14;">'Operating System :: OS Independent'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="python"> <span class="idiff left right"> </span><span class="s" style="color: #d14;">'Programming Language :: Python :: 2'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="python"> <span class="idiff left right"> </span><span class="s" style="color: #d14;">'Programming Language :: Python :: 3'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="python"> <span class="idiff left right"> </span><span class="s" style="color: #d14;">'Topic :: Scientific/Engineering :: Visualization'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="python"> <span class="idiff left right"> </span><span class="s" style="color: #d14;">'Intended Audience :: Science/Research'</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python"> <span class="idiff left right"> </span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">platforms</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'ALL'</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="python"> <span class="idiff left right"> </span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"><span class="n" style="color: #333;">setup</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">name</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">author</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">author</span><span class="p">,</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">author_email</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'dev@craban.de'</span><span class="p">,</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">url</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'https://github.com/FCS-analysis/multipletau'</span><span class="p">,</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">version</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">version</span><span class="p">,</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">packages</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="n" style="color: #333;">name</span><span class="p">],</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="n" style="color: #333;">package_dir</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="n" style="color: #333;">name</span><span class="p">:</span> <span class="n" style="color: #333;">name</span><span class="p">},</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">license</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"BSD (3 clause)"</span><span class="p">,</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">description</span><span class="p">,</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">long_description</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="s" style="color: #d14;">'README.rst'</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">read</span><span class="p">()</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="s" style="color: #d14;">'README.rst'</span><span class="p">)</span> <span class="k" style="font-weight: 600;">else</span> <span class="s" style="color: #d14;">''</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">install_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"numpy >= 1.5.1"</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">keywords</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"multiple tau"</span><span class="p">,</span> <span class="s" style="color: #d14;">"fluorescence correlation spectroscopy"</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">setup_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'pytest-runner'</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">tests_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"pytest"</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">classifiers</span><span class="o" style="font-weight: 600;">=</span> <span class="p">[</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"> <span class="s" style="color: #d14;">'Operating System :: OS Independent'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"> <span class="s" style="color: #d14;">'Programming Language :: Python :: 2'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="s" style="color: #d14;">'Programming Language :: Python :: 3'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="s" style="color: #d14;">'Topic :: Scientific/Engineering :: Visualization'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"> <span class="s" style="color: #d14;">'Intended Audience :: Science/Research'</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"> <span class="n" style="color: #333;">platforms</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'ALL'</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"></span></pre>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#d8e1cfacc4846ae9bc4f2c2692c31078e3012596"><strong>tests/test_ac_cc.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/env python</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">""" Tests correlation-autocorrelation identity</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""Test correlation-autocorrelation identity"""</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">__future__</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">division</span><span class="p">,</span> <span class="n" style="color: #333;">print_function</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">os.path</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">abspath</span><span class="p">,</span> <span class="n" style="color: #333;">basename</span><span class="p">,</span> <span class="n" style="color: #333;">dirname</span><span class="p">,</span> <span class="n" style="color: #333;">join</span><span class="p">,</span> <span class="n" style="color: #333;">split</span><span class="p">,</span> <span class="n" style="color: #333;">exists</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">platform</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">warnings</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">zipfile</span></span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Add parent directory to beginning of path variable</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="python"><span class="n" style="color: #333;">DIR</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">abspath</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="python"><span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="n" style="color: #333;">DIR</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">multipletau</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,13 +16,13 @@ def test_ac_cc_m():</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">ms</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">arrs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">m</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">ms</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,7 +33,7 @@ def test_ac_cc_m():</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">m</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">ms</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,24 +43,24 @@ def test_ac_cc_m():</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># test minimal length of array</span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">_r2</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_cc_normalize</span><span class="p">():</span></span>
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58
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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68
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59
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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69
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">a</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">arrs</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -79,7 +70,7 @@ def test_ac_cc_normalize():</td>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,19 +82,19 @@ def test_ac_cc_normalize():</td>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_cc_simple</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">a</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">arrs</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -113,7 +104,7 @@ def test_ac_cc_simple():</td>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">rescc</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="python"> <span class="n" style="color: #333;">resac</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,10 +116,10 @@ def test_ac_cc_simple():</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">resac</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="python"> <span class="n" style="color: #333;">resac</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">resac</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">resac</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">resac</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">rescc</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"__main__"</span><span class="p">:</span></span>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#612169739b53fe84090d735805644073b4c1ed42"><strong>tests/test_autocorrelate.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/env python</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">""" Tests autocorrelation algorithm</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""Tests autocorrelation algorithm"""</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">__future__</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">division</span><span class="p">,</span> <span class="n" style="color: #333;">print_function</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">os.path</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">abspath</span><span class="p">,</span> <span class="n" style="color: #333;">basename</span><span class="p">,</span> <span class="n" style="color: #333;">dirname</span><span class="p">,</span> <span class="n" style="color: #333;">join</span><span class="p">,</span> <span class="n" style="color: #333;">split</span><span class="p">,</span> <span class="n" style="color: #333;">exists</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">platform</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">warnings</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">zipfile</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Add parent directory to beginning of path variable</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="python"><span class="n" style="color: #333;">DIR</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">abspath</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="python"><span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="n" style="color: #333;">DIR</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pytest</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">multipletau</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,16 +21,16 @@ def get_reference_data(funcname, pyfile):</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">get_sample_arrays</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">4.3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">99.2</span><span class="p">,</span> <span class="mi" style="color: #099;">13</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">9921</span><span class="p">,</span> <span class="mi" style="color: #099;">281</span><span class="p">,</span> <span class="mf" style="color: #099;">23.5</span><span class="p">,</span> <span class="mf" style="color: #099;">5.3</span><span class="p">,</span> <span class="mi" style="color: #099;">77</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">l</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">33</span><span class="p">,</span> <span class="mi" style="color: #099;">92</span><span class="p">,</span> <span class="mi" style="color: #099;">47</span><span class="p">,</span> <span class="mi" style="color: #099;">54</span><span class="p">,</span> <span class="mi" style="color: #099;">99</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="idiff left"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">12</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">]</span></span><span class="idiff right"> </span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mf" style="color: #099;">.5</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">l<span class="idiff left">l</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">[</span></span><span class="mi" style="color: #099;">33</span><span class="p">,</span> <span class="mi" style="color: #099;">92</span><span class="p">,</span> <span class="mi" style="color: #099;">47</span><span class="p">,</span> <span class="mi" style="color: #099;">54</span><span class="p">,</span> <span class="mi" style="color: #099;">99</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;"><span class="idiff left">0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">12</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mf" style="color: #099;">.5</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ai</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">,</span> <span class="n" style="color: #333;">li</span><span class="p">,</span> <span class="n" style="color: #333;">ri</span><span class="p">,</span> <span class="n" style="color: #333;">pi</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">b</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">r</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">p</span></span><span class="p"><span class="idiff">):</span></span><span class="idiff right"> </span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">linspace</span><span class="p">(</span><span class="n" style="color: #333;">ai</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">bi</span></span><span class="p"><span class="idiff right">,</span></span><span class="n" style="color: #333;">li</span><span class="p">)</span></span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">arr</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">roll</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="n" style="color: #333;">ri</span><span class="p">))</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">pi</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ai</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">,</span> <span class="n" style="color: #333;">li</span><span class="p">,</span> <span class="n" style="color: #333;">ri</span><span class="p">,</span> <span class="n" style="color: #333;">pi</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">b</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ll</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">r</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">p</span></span><span class="p"><span class="idiff right">):</span></span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">linspace</span><span class="p">(</span><span class="n" style="color: #333;">ai</span><span class="p">,</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">bi</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">li</span><span class="p">)</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">arr</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">roll</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="idiff left right"> </span><span class="n" style="color: #333;">ri</span><span class="p">))</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">pi</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">arr</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">arrs</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,7 +38,7 @@ def test_ac_copy():</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"> <span class="n" style="color: #333;">res1</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -67,7 +60,7 @@ def test_ac_copy():</td>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"> <span class="n" style="color: #333;">res2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># simple test if result is the same</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res2</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -78,13 +71,13 @@ def test_ac_copy():</td>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">refarrs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">mark</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">filterwarnings</span><span class="p">(</span><span class="s" style="color: #d14;">"ignore::multipletau.core.DtypeWarning"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_dtype</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="python"> </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">round</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">round</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># integer</span></span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="python"> <span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,29 +95,33 @@ def test_ac_dtype():</td>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">uint</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="python"> <span class="n" style="color: #333;">ri2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">uint</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="python"> </span>
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111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri2</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="python"></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"> <span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri2</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_m</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">ms</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">arrs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">m</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">ms</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,25 +132,27 @@ def test_ac_m():</td>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># test minimal length of array</span></span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">_r2</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="python"> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#np.save(os.path.dirname(__file__)+"/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># np.save(os.path.dirname(__file__)</span></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># + "/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="python"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_reference_data</span><span class="p">(</span><span class="n" style="color: #333;">myname</span><span class="p">,</span> <span class="n" style="color: #333;">__file__</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">,</span> <span class="n" style="color: #333;">atol</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">rtol</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1e-15</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">mark</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">filterwarnings</span><span class="p">(</span><span class="s" style="color: #d14;">"ignore::multipletau.core.InvalidMWarning"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_m_wrong</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># integer</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -191,19 +190,19 @@ def test_ac_m_wrong():</td>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r2</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r3</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r4</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r5</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r2</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r3</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r4</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r5</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_normalize</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">a</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">arrs</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -213,9 +212,10 @@ def test_ac_normalize():</td>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#np.save(os.path.dirname(__file__)+"/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># np.save(os.path.dirname(__file__)</span></span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># + "/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="python"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_reference_data</span><span class="p">(</span><span class="n" style="color: #333;">myname</span><span class="p">,</span> <span class="n" style="color: #333;">__file__</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">,</span> <span class="n" style="color: #333;">atol</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">rtol</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1e-14</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -225,9 +225,9 @@ def test_ac_simple():</td>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">a</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">arrs</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -237,9 +237,10 @@ def test_ac_simple():</td>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#np.save(os.path.dirname(__file__)+"/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># np.save(os.path.dirname(__file__)</span></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># + "/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="python"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_reference_data</span><span class="p">(</span><span class="n" style="color: #333;">myname</span><span class="p">,</span> <span class="n" style="color: #333;">__file__</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">,</span> <span class="n" style="color: #333;">atol</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">rtol</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1e-15</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -251,4 +252,3 @@ if __name__ == "__main__":</td>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">key</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">keys</span><span class="p">()):</span></span>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">"test_"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">hasattr</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">],</span> <span class="s" style="color: #d14;">"__call__"</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="python"> <span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">]()</span></span></pre>
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="python"> </span></pre>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#dcc9ea38d5e973bf36a3e4234292026ab14c93a2"><strong>tests/test_basic.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/python</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="s" style="color: #d14;">basic tests also available in the function docs </span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""basic tests also available in the function docs"""</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">os.path</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">abspath</span><span class="p">,</span> <span class="n" style="color: #333;">dirname</span><span class="p">,</span> <span class="n" style="color: #333;">join</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">abspath</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">))))</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">multipletau</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">,</span> <span class="n" style="color: #333;">correlate</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">0.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">1.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">2.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.21000000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">4.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.03775000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">8.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.50612000e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.21000000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.03775000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.50612000e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc</span><span class="p">():</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="mi" style="color: #099;">43</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">0.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.46820000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">1.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">2.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">4.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.12325000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="python"> <span class="p">[</span><span class="idiff left right"> </span><span class="mf" style="color: #099;">8.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.58508000e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">43</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.46820000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.12325000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.58508000e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"__main__"</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Run all tests</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">locals</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">key</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">keys</span><span class="p">()):</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">"test_"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">hasattr</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">],</span> <span class="s" style="color: #d14;">"__call__"</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">]()</span></span></pre>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="python"> </span></pre>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#a0d1347eb7403a1424d8991defa75e66aac340c2"><strong>tests/test_compress.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/python</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""test strategies for propagating values to the next level"""</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">multipletau</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">,</span> <span class="n" style="color: #333;">correlate</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_compress_average</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"average"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.21000000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.03775000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.50612000e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_compress_average</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">43</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"average"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.46820000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.12325000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.58508000e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_compress_first</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"first"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.21000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.96080e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.31712e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_compress_first</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">43</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="python"> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"first"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.46820e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.04440e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.39104e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_compress_second</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="python"> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"second"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.21000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.11660e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.71024e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_compress_second</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="python"> <span class="n" style="color: #333;">ist</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">43</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">compress</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"second"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.46820e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.38210e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.29600e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.20400e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.00000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.79424e+04</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"__main__"</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Run all tests</span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">locals</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">key</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">keys</span><span class="p">()):</span></span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">"test_"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">hasattr</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">],</span> <span class="s" style="color: #d14;">"__call__"</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"> <span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">]()</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#8c5ee757614592c92913c69cc1b20960e844e587"><strong>tests/test_correlate.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/env python</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">""" Tests correlation algorithm</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""Tests correlation algorithm"""</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">__future__</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">division</span><span class="p">,</span> <span class="n" style="color: #333;">print_function</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">os.path</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">abspath</span><span class="p">,</span> <span class="n" style="color: #333;">basename</span><span class="p">,</span> <span class="n" style="color: #333;">dirname</span><span class="p">,</span> <span class="n" style="color: #333;">join</span><span class="p">,</span> <span class="n" style="color: #333;">split</span><span class="p">,</span> <span class="n" style="color: #333;">exists</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">platform</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">warnings</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">zipfile</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># Add parent directory to beginning of path variable</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="python"><span class="n" style="color: #333;">DIR</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dirname</span><span class="p">(</span><span class="n" style="color: #333;">abspath</span><span class="p">(</span><span class="n" style="color: #333;">__file__</span><span class="p">))</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"><span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="n" style="color: #333;">DIR</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">]]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pytest</span></span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">multipletau</span></span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,19 +16,19 @@ from test_autocorrelate import get_reference_data</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">get_sample_arrays_cplx</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">4.3</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">9</span><span class="p">,</span> <span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">99.2</span><span class="p">,</span> <span class="mi" style="color: #099;">13</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"> <span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">9921</span><span class="p">,</span> <span class="mi" style="color: #099;">281</span><span class="p">,</span> <span class="mf" style="color: #099;">23.5</span><span class="p">,</span> <span class="mf" style="color: #099;">5.3</span><span class="p">,</span> <span class="mi" style="color: #099;">77</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mf" style="color: #099;">2.1</span><span class="p">,</span> <span class="mf" style="color: #099;">1.3</span><span class="p">,</span> <span class="mi" style="color: #099;">33</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">d</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mf" style="color: #099;">.1</span><span class="p">,</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mf" style="color: #099;">6.3</span><span class="p">,</span> <span class="mi" style="color: #099;">88</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">l</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">33</span><span class="p">,</span> <span class="mi" style="color: #099;">92</span><span class="p">,</span> <span class="mi" style="color: #099;">47</span><span class="p">,</span> <span class="mi" style="color: #099;">54</span><span class="p">,</span> <span class="mi" style="color: #099;">99</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="idiff left"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">12</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">]</span></span><span class="idiff right"> </span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mf" style="color: #099;">.5</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">c</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">12</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mf" style="color: #099;">2.1</span><span class="p">,</span> <span class="mf" style="color: #099;">1.3</span><span class="p">,</span> <span class="mi" style="color: #099;">33</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">d</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mf" style="color: #099;">.1</span><span class="p">,</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mf" style="color: #099;">6.3</span><span class="p">,</span> <span class="mi" style="color: #099;">88</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">l<span class="idiff left">l</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">[</span></span><span class="mi" style="color: #099;">33</span><span class="p">,</span> <span class="mi" style="color: #099;">92</span><span class="p">,</span> <span class="mi" style="color: #099;">47</span><span class="p">,</span> <span class="mi" style="color: #099;">54</span><span class="p">,</span> <span class="mi" style="color: #099;">99</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;"><span class="idiff left">0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">12</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mf" style="color: #099;">.5</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="mi" style="color: #099;">3</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ai</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">,</span> <span class="n" style="color: #333;">ci</span><span class="p">,</span> <span class="n" style="color: #333;">di</span><span class="p">,</span> <span class="n" style="color: #333;">li</span><span class="p">,</span> <span class="n" style="color: #333;">ri</span><span class="p">,</span> <span class="n" style="color: #333;">pi</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">b</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">c</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">d</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">l</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">r</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">p</span></span><span class="p"><span class="idiff">):</span></span><span class="idiff right"> </span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="python"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">linspace</span><span class="p">(</span><span class="n" style="color: #333;">ai</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">bi</span></span><span class="p"><span class="idiff right">,</span></span><span class="n" style="color: #333;">li</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">linspace</span><span class="p">(</span><span class="n" style="color: #333;">ci</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">di</span></span><span class="p"><span class="idiff right">,</span></span><span class="n" style="color: #333;">li</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="python"> <span class="n" style="color: #333;">arr</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">roll</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="n" style="color: #333;">ri</span><span class="p">))</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">pi</span> <span class="o" style="font-weight: 600;">+</span> <span class="mf" style="color: #099;">1j</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">y</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">ai</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">,</span> <span class="n" style="color: #333;">ci</span><span class="p">,</span> <span class="n" style="color: #333;">di</span><span class="p">,</span> <span class="n" style="color: #333;">li</span><span class="p">,</span> <span class="n" style="color: #333;">ri</span><span class="p">,</span> <span class="n" style="color: #333;">pi</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">,</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">b</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">c</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">d</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ll</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">r</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">p</span></span><span class="p"><span class="idiff right">):</span></span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="n" style="color: #333;">x</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">linspace</span><span class="p">(</span><span class="n" style="color: #333;">ai</span><span class="p">,</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">bi</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">li</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">y</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">linspace</span><span class="p">(</span><span class="n" style="color: #333;">ci</span><span class="p">,</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">di</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">li</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">arr</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">roll</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">,</span><span class="idiff left right"> </span><span class="n" style="color: #333;">ri</span><span class="p">))</span><span class="o" style="font-weight: 600;">**</span><span class="n" style="color: #333;">pi</span> <span class="o" style="font-weight: 600;">+</span> <span class="mf" style="color: #099;">1j</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">y</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">arr</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">arrs</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,7 +36,7 @@ def test_cc_copy():</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"> <span class="n" style="color: #333;">res1</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -67,7 +58,7 @@ def test_cc_copy():</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="n" style="color: #333;">res2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># simple test if result is the same</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res2</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -78,13 +69,13 @@ def test_cc_copy():</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">refarrs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">mark</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">filterwarnings</span><span class="p">(</span><span class="s" style="color: #d14;">"ignore::multipletau.core.InvalidMWarning"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_dtype</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="python"> </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">round</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">round</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># integer</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="python"> <span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,21 +101,25 @@ def test_cc_dtype():</td>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="python"> </span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri2</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="python"></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="python"> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">ri2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="python"> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">),</span> <span class="s" style="color: #d14;">"if wrong dtype, dtype should default to np.float_"</span></span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="python"> <span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="python"> <span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">ri2</span><span class="p">),</span> <span class="s" style="color: #d14;">"result should be the same, because input us the same"</span></span>
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118
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">mark</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">filterwarnings</span><span class="p">(</span><span class="s" style="color: #d14;">"ignore::multipletau.core.InvalidMWarning"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_dtype2</span><span class="p">():</span></span>
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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122
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118
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">round</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"this should issue a warning of unequal input dtypes, casting to complex"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="python"> <span class="n" style="color: #333;">rf</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -133,13 +128,12 @@ def test_cc_dtype2():</td>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">rf</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"this should issue a warning of unequal input dtypes, casting to float"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="python"> <span class="n" style="color: #333;">rf2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">imag</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int_</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="python"> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">imag</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">int_</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">16</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">rf2</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dtype</span><span class="p">(</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -147,13 +141,13 @@ def test_cc_m():</td>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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149
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python"> <span class="n" style="color: #333;">ms</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">20</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span> <span class="mi" style="color: #099;">128</span><span class="p">]</span></span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">arrs</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">m</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">ms</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -165,26 +159,28 @@ def test_cc_m():</td>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># test minimal length of array</span></span>
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="python"> <span class="n" style="color: #333;"><span class="idiff left">_r2</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="python"> <span class="idiff left right"> </span><span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="python"> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">[:</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">m</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="python"> <span class="n" style="color: #333;">deltat</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#np.save(os.path.dirname(__file__)+"/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># np.save(os.path.dirname(__file__)</span></span>
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># + "/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="python"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_reference_data</span><span class="p">(</span><span class="n" style="color: #333;">myname</span><span class="p">,</span> <span class="n" style="color: #333;">__file__</span><span class="p">)</span></span>
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179
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">,</span> <span class="n" style="color: #333;">atol</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">rtol</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1e-15</span><span class="p">)</span></span>
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="python"></span>
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182
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="python"></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">mark</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">filterwarnings</span><span class="p">(</span><span class="s" style="color: #d14;">"ignore::multipletau.core.InvalidMWarning"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_m_wrong</span><span class="p">():</span></span>
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184
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># integer</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -223,19 +219,19 @@ def test_cc_m_wrong():</td>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r2</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r3</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r4</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="o" style="font-weight: 600;"><span class="idiff left right">==</span></span><span class="n" style="color: #333;">r5</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r2</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r3</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r4</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="nb" style="color: #0086b3;">all</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">r5</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_normalize</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">a</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">arrs</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -247,7 +243,8 @@ def test_cc_normalize():</td>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#np.save(os.path.dirname(__file__)+"/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># np.save(os.path.dirname(__file__)</span></span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># + "/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="python"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_reference_data</span><span class="p">(</span><span class="n" style="color: #333;">myname</span><span class="p">,</span> <span class="n" style="color: #333;">__file__</span><span class="p">)</span></span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">,</span> <span class="n" style="color: #333;">atol</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">rtol</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1e-14</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -257,9 +254,9 @@ def test_cc_simple():</td>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="python"> <span class="n" style="color: #333;">arrs</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">a</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">arrs</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="python"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,7 +269,8 @@ def test_cc_simple():</td>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="python"> <span class="n" style="color: #333;">res</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="n" style="color: #333;">r</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="python"> <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;">#np.save(os.path.dirname(__file__)+"/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># np.save(os.path.dirname(__file__)</span></span>
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># + "/data/"+os.path.basename(__file__)+"_"+myname+".npy", res)</span></span>
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="python"> <span class="n" style="color: #333;">ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">get_reference_data</span><span class="p">(</span><span class="n" style="color: #333;">myname</span><span class="p">,</span> <span class="n" style="color: #333;">__file__</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">,</span> <span class="n" style="color: #333;">ref</span><span class="p">,</span> <span class="n" style="color: #333;">atol</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">rtol</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">1e-15</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -298,4 +296,3 @@ if __name__ == "__main__":</td>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">key</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">keys</span><span class="p">()):</span></span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">"test_"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">hasattr</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">],</span> <span class="s" style="color: #d14;">"__call__"</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="python"> <span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">]()</span></span></pre>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="python"> </span></pre>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#cdb90477d4bc35b1684c5ad1ad303821ef4ade9d"><strong>tests/test_ref_numpy.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/python</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="s" style="color: #d14;">Compare to numpy data.</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">os.path</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">abspath</span><span class="p">,</span> <span class="n" style="color: #333;">dirname</span><span class="p">,</span> <span class="n" style="color: #333;">join</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""Compare to numpy data"""</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>
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9
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="n" style="color: #333;"><span class="idiff left">sys</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">path</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">insert</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">dirname</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">dirname</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">abspath</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">__file__</span></span><span class="p"><span class="idiff right">))))</span></span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;"><span class="idiff left">import</span></span><span class="idiff"> </span><span class="nn" style="color: #555;"><span class="idiff">numpy</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">as</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">np</span></span></span>
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11
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"></span>
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12
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">multipletau</span></span>
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13
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,9 +14,9 @@ def test_corresponds_ac():</td>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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19
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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20
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="python"><span class="idiff left right"> </span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"></span>
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22
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">())</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;"><span class="idiff left right">=</span></span><span class="mi" style="color: #099;">16</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">16</span></span>
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24
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"></span>
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25
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"> <span class="n" style="color: #333;">restau</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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26
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,25 +30,25 @@ def test_corresponds_ac():</td>
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34
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="p">,</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_corresponds_ac_first_loop</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"><span class="s" style="color: #d14;"> numpy correlation:</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"><span class="s" style="color: #d14;"> G_m = sum_i(a_i*a_{i+m})</span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;"><span class="idiff left right"> </span></span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"><span class="s" style="color: #d14;"> multipletau correlation 2nd order:</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="python"><span class="s" style="color: #d14;"> b_j = (a_{2i} + a_{2i+1} / 2)</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="python"><span class="s" style="color: #d14;"> G_m = sum_j(b_j*b_{j+1})</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="python"><span class="s" style="color: #d14;"> = 1/4*sum_i(a_{2i} * a_{2i+m} +</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="python"><span class="s" style="color: #d14;"> a_{2i} * a_{2i+m+1} +</span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="python"><span class="s" style="color: #d14;"> a_{2i+1} * a_{2i+m} +<span class="idiff left right"> </span></span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="python"><span class="s" style="color: #d14;"> a_{2i+1} * a_{2i+m} +</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="python"><span class="s" style="color: #d14;"> a_{2i+1} * a_{2i+m+1}</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="python"><span class="s" style="color: #d14;"> )</span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="python"><span class="s" style="color: #d14;"><span class="idiff left right"> </span></span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python"><span class="s" style="color: #d14;"> The values after the first m+1 lag times in the multipletau</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python"><span class="s" style="color: #d14;"> correlation differ from the normal correlation, because the</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="python"><span class="s" style="color: #d14;"> traces are averaged over two consecutive items, effectively</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -64,33 +60,33 @@ def test_corresponds_ac_first_loop():</td>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">arr</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">np</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">average</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">arr</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">for</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">arr</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">get_sample_arrays_cplx</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff right"> </span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;"><span class="idiff left">arr</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">np</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">average</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">arr</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">for</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">arr</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">get_sample_arrays_cplx</span></span><span class="p"><span class="idiff right">()</span>]</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="p">)[:</span><span class="mi" style="color: #099;">222</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># two consecutive elements are the same, so the multiple-tau method</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># corresponds to the numpy correlation for the first loop.</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="python"> <span class="n" style="color: #333;">a</span><span class="p">[::</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">a</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">::</span><span class="mi" style="color: #099;">2</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">m</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">,</span><span class="mi" style="color: #099;"><span class="idiff left">4</span></span><span class="p"><span class="idiff">,</span></span><span class="mi" style="color: #099;"><span class="idiff">6</span></span><span class="p"><span class="idiff">,</span></span><span class="mi" style="color: #099;"><span class="idiff">8</span></span><span class="p"><span class="idiff">,</span></span><span class="mi" style="color: #099;"><span class="idiff">10</span></span><span class="p"><span class="idiff">,</span></span><span class="mi" style="color: #099;"><span class="idiff">12</span></span><span class="p"><span class="idiff">,</span></span><span class="mi" style="color: #099;"><span class="idiff">14</span></span><span class="p"><span class="idiff right">,</span></span><span class="mi" style="color: #099;">16</span><span class="p">]:</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">m</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">,</span><span class="idiff left"> </span><span class="mi" style="color: #099;"><span class="idiff">4</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">6</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">8</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">10</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">12</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">14</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">16</span><span class="p">]:</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"> <span class="n" style="color: #333;">restau</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">imag</span><span class="o" style="font-weight: 600;">+</span><span class="mf" style="color: #099;">1j</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="python"> <span class="n" style="color: #333;">reslin</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate_numpy</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">imag</span><span class="o" style="font-weight: 600;">+</span><span class="mf" style="color: #099;">1j</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="python"> <span class="n" style="color: #333;">copy</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="python"> <span class="n" style="color: #333;">idtau</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">where</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="mi" style="color: #099;"><span class="idiff left">0</span></span><span class="p"><span class="idiff">]</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">==</span></span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">2</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="python"> <span class="n" style="color: #333;">tau3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">restau</span><span class="p">[</span><span class="n" style="color: #333;">idtau</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right">#</span>m+1 initial bins</span></span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="python"> <span class="n" style="color: #333;">idref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">where</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[:,</span><span class="mi" style="color: #099;"><span class="idiff left">0</span></span><span class="p"><span class="idiff">]</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">==</span></span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">2</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="python"> <span class="n" style="color: #333;">idtau</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">where</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="idiff left"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">]</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">2</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="python"> <span class="n" style="color: #333;">tau3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">restau</span><span class="p">[</span><span class="n" style="color: #333;">idtau</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="idiff left"> </span><span class="c1" style="color: #998; font-style: italic;"><span class="idiff right"># </span>m+1 initial bins</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="python"> <span class="n" style="color: #333;">idref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">where</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[:,</span><span class="idiff left"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">]</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">2</span><span class="p">)[</span><span class="mi" style="color: #099;">0</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="python"> <span class="n" style="color: #333;">tau3ref</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idref</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">tau3</span><span class="p">,</span> <span class="n" style="color: #333;">tau3ref</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="python"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,9 +94,9 @@ def test_corresponds_ac_nonormalize():</td>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">())</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span></span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;"><span class="idiff left right">=</span></span><span class="mi" style="color: #099;">16</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">16</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="python"> <span class="n" style="color: #333;">restau</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">1</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">m</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -114,18 +110,18 @@ def test_corresponds_ac_nonormalize():</td>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_corresponds_cc</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">())</span></span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;"><span class="idiff left right">=</span></span><span class="mi" style="color: #099;">16</span></span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">16</span></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="python"> <span class="n" style="color: #333;">restau</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">imag</span><span class="o" style="font-weight: 600;">+</span><span class="mf" style="color: #099;">1j</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -140,18 +136,18 @@ def test_corresponds_cc():</td>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="idiff left right"> </span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_corresponds_cc_nonormalize</span><span class="p">():</span></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="python"> <span class="n" style="color: #333;">myframe</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sys</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">_getframe</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python"> <span class="n" style="color: #333;">myname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">myframe</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">f_code</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">co_name</span></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python"> <span class="k" style="font-weight: 600;">print</span><span class="p">(</span><span class="s" style="color: #d14;">"running "</span><span class="p">,</span> <span class="n" style="color: #333;">myname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="python"><span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="python"> <span class="n" style="color: #333;">a</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">concatenate</span><span class="p">(</span><span class="n" style="color: #333;">get_sample_arrays_cplx</span><span class="p">())</span></span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;"><span class="idiff left right">=</span></span><span class="mi" style="color: #099;">16</span></span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="python"> <span class="n" style="color: #333;">m</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right"> </span><span class="mi" style="color: #099;">16</span></span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="python"> <span class="n" style="color: #333;">restau</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multipletau</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="python"> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">imag</span><span class="o" style="font-weight: 600;">+</span><span class="mf" style="color: #099;">1j</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">a</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -166,10 +162,10 @@ def test_corresponds_cc_nonormalize():</td>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="python"> <span class="n" style="color: #333;">normalize</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="python"> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">complex_</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="python"> <span class="n" style="color: #333;">idx</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">(</span><span class="n" style="color: #333;">restau</span><span class="p">[:,</span> <span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">real</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">int</span><span class="p">)[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">reslin</span><span class="p">[</span><span class="n" style="color: #333;">idx</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">restau</span><span class="p">[:</span><span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">])</span></span>
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="python"> </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"__main__"</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Run all tests</span></span>
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<a href="https://salsa.debian.org/med-team/python-multipletau/commit/b1ffc39320af84c7b546516703c44a4f4dc22582#3d4a58f18fa798878ff912d48e3c1e215398c1b4"><strong>tests/test_ret_sum.py</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/python</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># -*- coding: utf-8 -*-</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="python"><span class="s" style="color: #d14;">"""test returning exact sum plus normalization factor"""</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">multipletau</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">,</span> <span class="n" style="color: #333;">correlate</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_ac_return_sum</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="python"> <span class="n" style="color: #333;">ist</span><span class="p">,</span> <span class="n" style="color: #333;">ist_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">autocorrelate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"> <span class="n" style="color: #333;">ret_sum</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.382100e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.296000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.210000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.018875e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">3.586000e+03</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="python"> <span class="n" style="color: #333;">soll_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mf" style="color: #099;">42.</span><span class="p">,</span> <span class="mf" style="color: #099;">41.</span><span class="p">,</span> <span class="mf" style="color: #099;">40.</span><span class="p">,</span> <span class="mf" style="color: #099;">19.</span><span class="p">,</span> <span class="mf" style="color: #099;">8.</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll_count</span><span class="p">,</span> <span class="n" style="color: #333;">ist_count</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_cc_compress_average</span><span class="p">():</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">ist</span><span class="p">,</span> <span class="n" style="color: #333;">ist_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">correlate</span><span class="p">(</span><span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">42</span><span class="p">),</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">43</span><span class="p">),</span> <span class="n" style="color: #333;">m</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">2</span><span class="p">,</span> <span class="n" style="color: #333;">dtype</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">float_</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">ret_sum</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="python"> <span class="n" style="color: #333;">soll</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">array</span><span class="p">([[</span><span class="mf" style="color: #099;">0.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.468200e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">1.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.382100e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">2.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">2.296000e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">4.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">1.061625e+04</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="p">[</span><span class="mf" style="color: #099;">8.000000e+00</span><span class="p">,</span> <span class="mf" style="color: #099;">3.774000e+03</span><span class="p">]])</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">soll_count</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="mf" style="color: #099;">42.</span><span class="p">,</span> <span class="mf" style="color: #099;">41.</span><span class="p">,</span> <span class="mf" style="color: #099;">40.</span><span class="p">,</span> <span class="mf" style="color: #099;">19.</span><span class="p">,</span> <span class="mf" style="color: #099;">8.</span><span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll</span><span class="p">,</span> <span class="n" style="color: #333;">ist</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"> <span class="k" style="font-weight: 600;">assert</span> <span class="n" style="color: #333;">np</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">allclose</span><span class="p">(</span><span class="n" style="color: #333;">soll_count</span><span class="p">,</span> <span class="n" style="color: #333;">ist_count</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">"__main__"</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Run all tests</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="n" style="color: #333;">loc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">locals</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="python"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">key</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">keys</span><span class="p">()):</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">key</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">startswith</span><span class="p">(</span><span class="s" style="color: #d14;">"test_"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">and</span> <span class="nb" style="color: #0086b3;">hasattr</span><span class="p">(</span><span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">],</span> <span class="s" style="color: #d14;">"__call__"</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"> <span class="n" style="color: #333;">loc</span><span class="p">[</span><span class="n" style="color: #333;">key</span><span class="p">]()</span></span></pre>
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