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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/qiime">Debian Med / qiime</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/qiime/commit/20bdd0c76a715b2f010dc37308f4efce0e674317">20bdd0c7</a></strong>
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<span>by Liubov Chuprikova</span>
<i>at 2018-11-03T13:21:30Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt d/copyright to Qiime2
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/qiime/commit/20bdd0c76a715b2f010dc37308f4efce0e674317#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,6 +7,7 @@ qiime (2018.8.0-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> [ Liubov Chuprikova ]</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Make .egg-info available for build time tests</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Adapt d/copyright to Qiime2</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 19 Oct 2018 15:20:48 +0200</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/qiime/commit/20bdd0c76a715b2f010dc37308f4efce0e674317#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: QIIME 2</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Upstream-Contact: Greg Caporaso <gregcaporaso@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://github.com/qiime2/qiime2/releases</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Files-Excluded: </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> *.jar</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Copyright: 2010-2012 Greg Caporaso <gregcaporaso@gmail.com>,</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> Jens Reeder <jens.reeder@gmail.com>,</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> Kyle Bittinger and others</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">License: GPL-2+</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Files: qiime_test_data/align_seqs/core_set_aligned.fasta.imputed</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Copyright: (C) The Greengenes Database Consortium <http://greengenes.secondgenome.com/></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">License: CC-BY-SA </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> The Greengenes Database by The Greengenes Database Consortium is licensed under</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> a Creative Commons Attribution-ShareAlike 3.0 Unported License.</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> Academic users should cite:</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> DeSantis, T. Z., P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller,</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> T. Huber, D. Dalevi, P. Hu, and G. L. Andersen. 2006.</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> with ARB. Appl Environ Microbiol 72:5069-72.</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">Files: qiime/support_files/js/jquery.js</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">Copyright: John Resig <jquery.com></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext">License: GPL-2+ or MIT</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext">Comment: Dual licensed under the MIT (MIT-LICENSE.txt)</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> and GPL (GPL-LICENSE.txt) licenses.</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext">Files: qiime/support_files/js/jquery.tablednd_0_5.js</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">Copyright: Denis Howlett <denish@isocra.com></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext">Files: qiime/support_files/js/overlib.js</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext">Copyright: 1998-2004 Erik Bosrup. All rights reserved.</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext">License: overlib</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> Contributors are listed on the homepage.</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> This file might be old, always check for the latest version at:</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> https://github.com/overlib/overlib</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> Please read the license agreement (available through the link above)</span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> before using overLIB. Direct any licensing questions to erik@bosrup.com.</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> .</span>
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46
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> Do not sell this as your own work or remove this copyright notice.</span>
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<td class="diff-line-num old old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> For full details on copying or changing this script please read the</span>
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<td class="diff-line-num old old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> license agreement at the link above. Please give credit on sites that</span>
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<td class="diff-line-num old old_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> use overLIB and submit changes of the script so other people can use</span>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> them as well.</span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext">Comment: The link above throws 404</span>
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52
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> Project moved to Github but the License file was not moved.</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Copyright: 2016-2018 QIIME 2 development team</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">License: BSD-3-clause</span>
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53
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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54
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9
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Files: debian/*</span>
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55
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Copyright: 2010 Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,6 +13,32 @@ Copyright: 2010 Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de></td>
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58
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13
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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59
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14
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">License: GPL-2+</span>
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60
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">License: BSD-3-clause</span>
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<td class="diff-line-num new old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Redistribution and use in source and binary forms, with or without</span>
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<td class="diff-line-num new old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> modification, are permitted provided that the following conditions are met:</span>
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<td class="diff-line-num new old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> .</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> 1. Redistributions of source code must retain the above copyright notice,</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> this list of conditions and the following disclaimer.</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> .</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> 2. Redistributions in binary form must reproduce the above copyright notice,</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> this list of conditions and the following disclaimer in the documentation</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> and/or other materials provided with the distribution.</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> .</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> 3. Neither the name of the copyright holder nor the names of its</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> contributors may be used to endorse or promote products derived from this</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> software without specific prior written permission.</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> .</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"></span>
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61
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">License: GPL-2+</span>
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62
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> This program is free software; you can redistribute it and/or modify</span>
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63
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> it under the terms of the GNU General Public License as published by</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,24 +58,3 @@ License: GPL-2+</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> On a Debian system, the GNU GPL license version 2 is distributed in the</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> file /usr/share/common-licenses/GPL-2.</span></pre>
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80
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"></span>
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81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> Permission is hereby granted, free of charge, to any person obtaining a</span>
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83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> copy of this software and associated documentation files (the</span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> "Software"), to deal in the Software without restriction, including</span>
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85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> without limitation the rights to use, copy, modify, merge, publish,</span>
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86
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> distribute, sublicense, and/or sell copies of the Software, and to</span>
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87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> permit persons to whom the Software is furnished to do so, subject to</span>
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<td class="diff-line-num old old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> the following conditions:</span>
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89
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> .</span>
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90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> The above copyright notice and this permission notice shall be included</span>
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91
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> in all copies or substantial portions of the Software.</span>
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92
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> .</span>
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93
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS</span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF</span>
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95
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.</span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY</span>
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97
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,</span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE</span>
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99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. </span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"></span></pre>
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