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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/ariba">Debian Med / ariba</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ariba/commit/60af3c31a8157af76f659adb06c6d5a6907c6020">60af3c31</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-11-21T15:29:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.13.1+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ariba/commit/000600c02a9f7364ddaeaabdd1ed66776b6e264a">000600c0</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-11-21T15:29:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/2.13.1+ds'
Upstream version 2.13.1+ds
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ariba/commit/c3a1e4afa598a0075cd29db71a448415d121c234">c3a1e4af</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-11-21T15:39:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ariba/commit/76cfa6e403d381eb54699781de2965be577c808c">76cfa6e4</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-11-21T15:39:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new dependency
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#cd089ae45ce870c45e434019e8f1ed4f066cd425">
<span class="new-file">
+
_config.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#a3c646e0d3ca4848649feca0d365f294a32c5b56">
ariba/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#4686ec029c747c4997c3461db20e52276dfa268d">
ariba/assembly.py
</a>
</li>
<li class="file-stats">
<a href="#aa7da031b0960d2609000e527dd7639d1640ae89">
ariba/cdhit.py
</a>
</li>
<li class="file-stats">
<a href="#9feea2d377e2ad6ec437b52ed355c2ba7aa4b024">
ariba/cluster.py
</a>
</li>
<li class="file-stats">
<a href="#890fcfab7db0d3d43498d75f0b153ca62f1ad586">
ariba/clusters.py
</a>
</li>
<li class="file-stats">
<a href="#1dec086bef7d82b46a21050bb34e52b91e064f34">
ariba/common.py
</a>
</li>
<li class="file-stats">
<a href="#7a80c60d21d93a56bef168cf8344cea1c7c1212c">
ariba/megares_zip_parser.py
</a>
</li>
<li class="file-stats">
<a href="#3913f762ba325805df5d55a50c14be3dbb45a620">
ariba/mic_plotter.py
</a>
</li>
<li class="file-stats">
<a href="#5be9f2b12c950dac56af02ad239630825af18077">
ariba/mlst_reporter.py
</a>
</li>
<li class="file-stats">
<a href="#31c2a74dc59a82ae4a356c3b011e4bbcdd00c1e1">
ariba/pubmlst_getter.py
</a>
</li>
<li class="file-stats">
<a href="#58054356e11f7717cfa55a32bab7ebacb60c77c4">
ariba/read_filter.py
</a>
</li>
<li class="file-stats">
<a href="#acaa9a3bc0fc8ad5b28b290d79b7b26d3f71d6d4">
ariba/ref_genes_getter.py
</a>
</li>
<li class="file-stats">
<a href="#26b854c1e587b7ea31b78a669fba9b66adbaefa8">
ariba/ref_preparer.py
</a>
</li>
<li class="file-stats">
<a href="#ee6ee6dacc5321aa5b6e5d2195f51869737b047d">
ariba/ref_seq_chooser.py
</a>
</li>
<li class="file-stats">
<a href="#7a693623f7e7dfe7ab306f7bdacf4973919816c0">
ariba/reference_data.py
</a>
</li>
<li class="file-stats">
<a href="#638dae4db954385c04661c8bf90cc9622e731098">
ariba/report_flag_expander.py
</a>
</li>
<li class="file-stats">
<a href="#74099b88c90b4310b187325b30aad24dbf449a31">
ariba/summary_cluster.py
</a>
</li>
<li class="file-stats">
<a href="#0b4d30f42911d1749f1c5289ffc0dfd1ad4c7ef3">
ariba/tasks/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e76b856be0c7a4e23509bdf459ab633a183bc378">
<span class="new-file">
+
ariba/tasks/prepareref_tb.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#2a1e1b6414ed603b06fec0cdbe3def87a6de5920">
<span class="new-file">
+
ariba/tb.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5f3aa5be3b6be28463999e1c9bb2a01e75456c5">
<span class="new-file">
+
ariba/tb_data/NC_000962.3.fa.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#28adb0090229cd2a260a3b5f581879ea50d85c7d">
<span class="new-file">
+
ariba/tb_data/NC_000962.3.gb
</span>
</a>
</li>
<li class="file-stats">
<a href="#0cdc91b92c7705b39a73942276f64c09bf095477">
<span class="new-file">
+
ariba/tb_data/panel.20181115.json
</span>
</a>
</li>
<li class="file-stats">
<a href="#2da49e6e32f3461d04f8c844cc2d3735d730cc30">
<span class="new-file">
+
ariba/tb_data/panel.20181115.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#d08f397161ea3da6f6624940aa4dfb27366c73d7">
ariba/tests/assembly_test.py
</a>
</li>
<li class="file-stats">
<a href="#4d9c2935e4cc76385b09fc0d5f76c78c5e256816">
ariba/tests/cluster_test.py
</a>
</li>
<li class="file-stats">
<a href="#b31c987dc8739fd52b283b698c71755ac60b20ff">
ariba/tests/clusters_test.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/ariba/compare/3aba24dbcb00fea24a99bc5c8d5a0d55af81259b...76cfa6e403d381eb54699781de2965be577c808c">View it on GitLab</a>.
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