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<h3>
Alexandre Mestiashvili pushed to branch master
at <a href="https://salsa.debian.org/med-team/pyscanfcs">Debian Med / pyscanfcs</a>
</h3>
<h4>
Commits:
</h4>
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<strong><a href="https://salsa.debian.org/med-team/pyscanfcs/commit/353c093f957993a026ef45f6a567c7d056a2a172">353c093f</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-11-28T17:46:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add patch presumably fixing test failures on big-endian archs
</pre>
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<strong><a href="https://salsa.debian.org/med-team/pyscanfcs/commit/8f723b19c61fa86c5e7ae893d07f19c69c8f07e6">8f723b19</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-11-28T17:47:30Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog, upload to experimental
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#3888414e8ca611a48e72e5f0babaf1fee94d1812">
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+
debian/patches/0001-force-little-endian-dtype-17.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/pyscanfcs/compare/fb9db1f0bff684fc1e34e619a42e3ae5c4ecafee...8f723b19c61fa86c5e7ae893d07f19c69c8f07e6#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">pyscanfcs (0.3.0+dfsg-2) experimental; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Add patch presumably fixing test failures on big-endian archs</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Alexandre Mestiashvili <mestia@debian.org> Wed, 28 Nov 2018 17:47:12 +0000</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">pyscanfcs (0.3.0+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> [ Steffen Möller ]</span>
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<li id="3888414e8ca611a48e72e5f0babaf1fee94d1812">
<a href="https://salsa.debian.org/med-team/pyscanfcs/compare/fb9db1f0bff684fc1e34e619a42e3ae5c4ecafee...8f723b19c61fa86c5e7ae893d07f19c69c8f07e6#3888414e8ca611a48e72e5f0babaf1fee94d1812"><strong>debian/patches/0001-force-little-endian-dtype-17.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">>From 1950d60ab4824e18cd2964f8b4431881bec13116 Mon Sep 17 00:00:00 2001</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">From: Paul Müller <dev@craban.de></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Date: Sat, 24 Nov 2018 15:50:12 +0100</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Subject: [PATCH] force little-endian dtype (#17)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> pyscanfcs/sfcs_alg.pyx | 11 ++++-------</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> 1 file changed, 4 insertions(+), 7 deletions(-)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gh" style="color: #999;">diff --git a/pyscanfcs/sfcs_alg.pyx b/pyscanfcs/sfcs_alg.pyx</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gh" style="color: #999;">index 8cf5cbf..b7ee5d9 100755</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/pyscanfcs/sfcs_alg.pyx</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/pyscanfcs/sfcs_alg.pyx</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -146,7 +146,6 @@ def bin_photon_events(np.ndarray[DTYPEuint32_t] data, double t_bin,</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> TempTrace.append(phot_c)</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> NewFile.write(outdtype(TempTrace))</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- del TempTrace</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> NewFile.close()</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> return outfile</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -203,9 +202,9 @@ def open_dat(filename, callback=None, cb_kwargs={}):</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> File = open(filename, 'rb')</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> # 1st byte: get file format</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> # should be 16 - for 16 bit</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fformat = int(np.fromfile(File, dtype="uint8", count=1))</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fformat = int(np.fromfile(File, dtype="<u1", count=1))</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> # 2nd byte: read system clock</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- system_clock = int(np.fromfile(File, dtype="uint8", count=1))</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ system_clock = int(np.fromfile(File, dtype="<u1", count=1))</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> if fformat == 8:</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> # No 8 bit format supported</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> warnings.warn('8 bit format not supported.')</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -213,7 +212,7 @@ def open_dat(filename, callback=None, cb_kwargs={}):</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> return system_clock, None</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> elif fformat == 32:</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> # (There is an utility to convert data to 32bit)</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- datData = np.fromfile(File, dtype="uint32", count=-1)</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ datData = np.fromfile(File, dtype="<u4", count=-1)</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> File.close()</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> return system_clock, datData</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> elif fformat == 16:</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -225,9 +224,8 @@ def open_dat(filename, callback=None, cb_kwargs={}):</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> # In case of 16 bit file format (assumed), read the rest of the file in</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> # 16 bit format.</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> # Load bunch of Data</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Data = np.fromfile(File, dtype="uint16", count=-1)</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Data = np.fromfile(File, dtype="<u2", count=-1)</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> File.close()</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"> # Now we need to check if there are any 0xFFFF values which would</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> # mean, that we do not yet have the true data in our array.</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> # There is 32 bit data after a 0xFFFF = 65535</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -261,5 +259,4 @@ def open_dat(filename, callback=None, cb_kwargs={}):</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"> datData = np.delete(datData, zeroids)</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- del Data</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> return system_clock, datData</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-- </span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff">2.20.0.rc1</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"></span></pre>
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<a href="https://salsa.debian.org/med-team/pyscanfcs/compare/fb9db1f0bff684fc1e34e619a42e3ae5c4ecafee...8f723b19c61fa86c5e7ae893d07f19c69c8f07e6#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">0001-force-little-endian-dtype-17.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">gui_scripts.patch</span></pre>
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