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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/4b641b5f58cc06f5ca4737981cbfd64c7d2a7899">4b641b5f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-01T07:02:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.18.17+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/3e087d268192d77d8ca9d7f3257220ca0b6a1b07">3e087d26</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-01T07:03:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.18.17+dfsg'
Update to upstream version '2.18.17+dfsg'
with Debian dir 0630852ae1c97db245361e03a44bbc06602226f3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/649b6cb185b34b621f03db712430afc432afc179">649b6cb1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-01T07:03:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/08ce271c707b5017e689515246617042b3a21e62">08ce271c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-01T07:04:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/9b4f6338d3314910dd312171797f738b63f5e56e">9b4f6338</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-01T07:04:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/a6af645693b01b9dd1da62d7b4e593574ac5a520">a6af6456</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-01T07:04:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/84f8db6109024cf2baebd99e997bbd3e746003b9">84f8db61</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-01T07:04:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/rules
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#8e4878a852074154d4ceb788ddcf68b23642354f">
src/main/java/picard/analysis/TheoreticalSensitivity.java
</a>
</li>
<li class="file-stats">
<a href="#4b494ef67355a05286058b71311a9448ce743651">
src/main/java/picard/fingerprint/CheckFingerprint.java
</a>
</li>
<li class="file-stats">
<a href="#6a02930b07b9a5d4b76685f51390584d3d138f67">
src/main/java/picard/illumina/IlluminaBasecallsToFastq.java
</a>
</li>
<li class="file-stats">
<a href="#4e3534a75dfd4f65811dba40ad728ca9e29c2844">
src/main/java/picard/illumina/IlluminaBasecallsToSam.java
</a>
</li>
<li class="file-stats">
<a href="#776518b1ba71a408ae21f8028798a4177a07da9a">
src/main/java/picard/illumina/NewIlluminaBasecallsConverter.java
</a>
</li>
<li class="file-stats">
<a href="#c3739150012b3ae914edffdb52e1e5d9f670f249">
src/main/java/picard/illumina/parser/BaseIlluminaDataProvider.java
</a>
</li>
<li class="file-stats">
<a href="#d6bb75c9024cc453664c0b86f81e99351b1b0cfe">
src/main/java/picard/illumina/parser/CbclData.java
</a>
</li>
<li class="file-stats">
<a href="#42ffd9ee8bcca3205d789b07350058144442f1ff">
src/main/java/picard/illumina/parser/FilterParser.java
</a>
</li>
<li class="file-stats">
<a href="#3d226ee21322a8c38428ca7889d26099c1bac15d">
src/main/java/picard/illumina/parser/IlluminaData.java
</a>
</li>
<li class="file-stats">
<a href="#f55c3e150599eac421c9c0da2d34e9add32b8f31">
src/main/java/picard/illumina/parser/MultiTileFilterParser.java
</a>
</li>
<li class="file-stats">
<a href="#db3e4fed95085a2dc452476c200f06c594ffe019">
src/main/java/picard/illumina/parser/readers/CbclReader.java
</a>
</li>
<li class="file-stats">
<a href="#735eb3dc422ffa57ecb5c1e5b501aede2eb827b6">
src/main/java/picard/sam/RevertSam.java
</a>
</li>
<li class="file-stats">
<a href="#27b373658b0266838a2e7b5abf9e09f5c4da3488">
src/main/java/picard/sam/markduplicates/MarkDuplicates.java
</a>
</li>
<li class="file-stats">
<a href="#1f170bf5c9a4f10fa2b3f03d1deb4f1c8019cd4f">
src/main/java/picard/sam/markduplicates/UmiAwareDuplicateSetIterator.java
</a>
</li>
<li class="file-stats">
<a href="#90ab4e16e897e3d4d374ebe962b0e5f2784d65f5">
src/main/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigar.java
</a>
</li>
<li class="file-stats">
<a href="#647fee3e2296869b99ed234ca9d037c8e4a9e9f2">
src/main/java/picard/sam/markduplicates/UmiGraph.java
</a>
</li>
<li class="file-stats">
<a href="#2251ea850ba98345bce132efaf72cb3836941ddb">
src/main/java/picard/sam/markduplicates/UmiUtil.java
</a>
</li>
<li class="file-stats">
<a href="#dc629c42db1f7d3a87978e3c165dbd25e8d1cd12">
src/main/java/picard/sam/markduplicates/util/OpticalDuplicateFinder.java
</a>
</li>
<li class="file-stats">
<a href="#7b8c8bdd576e9d3a0df135db87180469ffbaea30">
src/main/java/picard/sam/util/ReadNameParser.java
</a>
</li>
<li class="file-stats">
<a href="#3b702acfbfa289a0a26fac94d39eb0c15a042832">
src/main/java/picard/util/GraphUtils.java
</a>
</li>
<li class="file-stats">
<a href="#ff06598d98af722d8f35c83cb06c96be70dc2637">
<span class="new-file">
+
src/main/java/picard/util/IntervalList/IntervalListScatterMode.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#0d40458a7eae0a255099f592283e0ac3b532d08c">
<span class="new-file">
+
src/main/java/picard/util/IntervalList/IntervalListScatterer.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#6fa2ed74960f62b000301b3f4a9d99c1d6994420">
<span class="new-file">
+
src/main/java/picard/util/IntervalList/IntervalListScattererByBaseCount.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#fb135681fcedadab8d799f99b2a9318ed367938f">
<span class="new-file">
+
src/main/java/picard/util/IntervalList/IntervalListScattererByIntervalCount.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#d93f1859c74d60d730da83a622127e969d92ce61">
<span class="new-file">
+
src/main/java/picard/util/IntervalList/IntervalListScattererWithSubdivision.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#04287b6b11f990966f0f1475d06d988444563384">
<span class="new-file">
+
src/main/java/picard/util/IntervalList/IntervalListScattererWithoutSubdivision.java
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777777;">
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<a href="https://salsa.debian.org/med-team/picard-tools/compare/9359e09f6df2c08b2f2ec3269c9243b8ef06c449...84f8db6109024cf2baebd99e997bbd3e746003b9">View it on GitLab</a>.
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