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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/mafft">Debian Med / mafft</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mafft/commit/2f378f26946c21a8cee2ca0edff92615863a99e2">2f378f26</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-02T10:39:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Let dh_auto_build pass cross tools to make
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mafft/commit/f351c918f4cd6c68340088d6cb6494a14f879343">f351c918</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-02T10:39:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mafft/commit/32eca76e73edc5434f277552eef1a02ec9a674d4">32eca76e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-02T10:42:25Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/mafft/compare/31d2e64a240a431bb4cf6865cce9c2be3aba62ae...32eca76e73edc5434f277552eef1a02ec9a674d4#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">mafft (7.407-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Helmut Grohne ]</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #914715)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Also simplify debian/rules using --sourcedirectory.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sun, 02 Dec 2018 11:39:45 +0100</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">mafft (7.407-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,7 +146,7 @@ mafft (7.158-1) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext">mafft (7.157-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> * New upstream release.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> * New upstream release.</span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> * debian/control</span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> - Added substitution variable ${perl:Depends}, used by Debhelper.</span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> - Recommend libwww-perl used by the script ‘seekquencer_premafft.pl’.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -144,7 +155,7 @@ mafft (7.157-1) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext">mafft (7.149-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> * New upstream release.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> * New upstream release.</span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> -- Charles Plessy <plessy@debian.org> Sat, 12 Apr 2014 13:46:13 +0900</span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/mafft/compare/31d2e64a240a431bb4cf6865cce9c2be3aba62ae...32eca76e73edc5434f277552eef1a02ec9a674d4#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,10 +8,10 @@</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: teal;">DEB_BUILD_MAINT_OPTIONS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">hardening</span><span class="o" style="font-weight: 600;">=</span>+all</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="make"><span class="nl">%</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="make"> dh <span class="nv" style="color: teal;">$@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="make"> dh <span class="nv" style="color: teal;">$@</span><span class="idiff left"> </span><span class="nt" style="color: navy;"><span class="idiff">--sourcedirectory</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right">core</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="make"><span class="nl">override_dh_auto_build</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="make"> <span class="nv" style="color: teal;"><span class="idiff left">$(MAKE)</span></span><span class="idiff"> </span><span class="nt" style="color: navy;"><span class="idiff">-C</span></span><span class="idiff right"> core</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="make"> <span class="idiff left">dh_auto_build </span><span class="nt" style="color: navy;"><span class="idiff right">--</span></span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="make"> <span class="nv" style="color: teal;">PREFIX</span><span class="o" style="font-weight: 600;">=</span>/usr/lib/mafft <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="make"> <span class="nv" style="color: teal;">ENABLE_MULTITHREAD</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: navy;">-Denablemultithread</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="make"> <span class="nv" style="color: teal;">LIBDIR</span><span class="o" style="font-weight: 600;">=</span>/usr/lib/mafft/lib/mafft <span class="se" style="color: #d14;">\</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,14 +19,13 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="make"> <span class="nv" style="color: teal;">LDFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">shell</span> <span class="s2" style="color: #d14;">dpkg-buildflags --get LDFLAGS</span><span class="nv" style="color: teal;">)</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="make"><span class="nl">override_dh_clean</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="make"> <span class="o" style="font-weight: 600;">[</span> <span class="o" style="font-weight: 600;">!</span> <span class="nt" style="color: navy;">-f</span> core/Makefile <span class="o" style="font-weight: 600;">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="nv" style="color: teal;">$(MAKE)</span> <span class="nt" style="color: navy;">-C</span> core clean</span>
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23
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-rf</span> binaries/<span class="k" style="font-weight: 600;">*</span> scripts/<span class="k" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> dh_clean</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="nv" style="color: teal;">MAFFT</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">MAFFT_BINARIES</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$(CURDIR)</span>/binaries scripts/mafft</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="make"></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="make"><span class="nl">override_dh_install</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="make"> <span class="nv" style="color: teal;"><span class="idiff left">$(MAKE)</span></span><span class="idiff"> </span><span class="nt" style="color: navy;"><span class="idiff">-C</span></span><span class="idiff"> core </span><span class="nv" style="color: teal;"><span class="idiff">PREFIX</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="nv" style="color: teal;"><span class="idiff">$(CURDIR)</span></span><span class="idiff">/debian/mafft/usr/lib/mafft </span><span class="nv" style="color: teal;"><span class="idiff">MANDIR</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="nv" style="color: teal;"><span class="idiff">$(CURDIR)</span></span><span class="idiff">/debian/mafft/usr/share/man/man1 </span><span class="nv" style="color: teal;"><span class="idiff">LIBDIR</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="nv" style="color: teal;"><span class="idiff">$(CURDIR)</span></span><span class="idiff">/debian/mafft/usr/lib/mafft/lib/mafft </span><span class="nb" style="color: #0086b3;"><span class="idiff right">install</span></span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="make"><span class="nl">override_dh_<span class="idiff left right">auto_</span>install</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="make"> <span class="idiff left">dh_auto_install </span><span class="nt" style="color: navy;"><span class="idiff">--</span></span><span class="idiff"> </span><span class="nv" style="color: teal;"><span class="idiff">PREFIX</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff">/usr/lib/mafft </span><span class="nv" style="color: teal;"><span class="idiff">MANDIR</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff">/usr/share/man/man1 </span><span class="nv" style="color: teal;"><span class="idiff">LIBDIR</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff right">/usr/lib/mafft/lib/mafft</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm </span>debian/mafft/usr/lib/mafft/lib/mafft/<span class="k" style="font-weight: 600;">*</span>.1</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="make"><span class="nl">override_dh_compress</span><span class="o" style="font-weight: 600;">:</span></span>
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