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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/progressivemauve">Debian Med / progressivemauve</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/progressivemauve/commit/56a72a26740915e5f5632fca9596275e061a186f">56a72a26</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-04T08:59:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix FTBFS with boost1.67
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/progressivemauve/commit/2e3ec76bd885d1f925e51c9fd77e2c31c74abcfd">2e3ec76b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-04T09:00:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/progressivemauve/commit/20fea679f7789b04c4612a97878298d26bcd69fc">20fea679</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-04T09:03:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix line endings
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/progressivemauve/commit/eacf86aa8266157fc4263d389c9a137aec6dd195">eacf86aa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-04T09:07:50Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#f7da2572e33c809ff7ef31dc15cf25cea0cd8601">
<span class="new-file">
+
debian/patches/fix_FTBFS_boost1.67.patch
</span>
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/progressivemauve/compare/264cad146c48537b35fa8365e9137905785f8a21...eacf86aa8266157fc4263d389c9a137aec6dd195#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">progressivemauve (1.2.0+4713+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Giovanni Mascellani ]</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix FTBFS with boost1.67</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #914049</span>
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Standards-Version: 4.2.1</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 04 Dec 2018 10:03:31 +0100</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">progressivemauve (1.2.0+4713+dfsg-3) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/progressivemauve/compare/264cad146c48537b35fa8365e9137905785f8a21...eacf86aa8266157fc4263d389c9a137aec6dd195#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,8 +12,8 @@ Build-Depends: debhelper (>= 11~),</td>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libboost-iostreams-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libgenome-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> libmuscle-dev,</span>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> libmems-dev<span class="idiff left right"> (>= 1.6.0+4725-7~)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.5</span></span>
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<td class="diff-line-num new old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> libmems-dev</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/progressivemauve</span>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/progressivemauve.git</span>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Homepage: http://darlinglab.org/mauve/user-guide/mauvealigner.html</span>
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<li id="f7da2572e33c809ff7ef31dc15cf25cea0cd8601">
<a href="https://salsa.debian.org/med-team/progressivemauve/compare/264cad146c48537b35fa8365e9137905785f8a21...eacf86aa8266157fc4263d389c9a137aec6dd195#f7da2572e33c809ff7ef31dc15cf25cea0cd8601"><strong>debian/patches/fix_FTBFS_boost1.67.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Giovanni Mascellani <gio@debian.org></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/914049</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Subject: Fix FTBFS with boost1.67</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">Make an explicit call to the constructor for NeighborhoodGroup (which is</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">an alias for a specialization of boost::tuple), which is not marked</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">as "explicit".</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/repeatoire.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/repeatoire.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1591,7 +1591,7 @@ void processNovelSubsetMatches( GappedMa</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> getSubsets(M_j,-direction*ni_parity*nj_parity).push_back(nj_link);</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> //getExtraSubsets(M_j,-direction*ni_parity*nj_parity).push_back(nj_link);</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> // push M_n onto the heap</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- novel_subset_list.push_back(M_n);</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ novel_subset_list.push_back(NeighborhoodGroup{M_n});</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> //procrastination_queue.push(M_n);</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> novel_subset_count++;</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> }</span></pre>
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<a href="https://salsa.debian.org/med-team/progressivemauve/compare/264cad146c48537b35fa8365e9137905785f8a21...eacf86aa8266157fc4263d389c9a137aec6dd195#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,4 @@ do_not_build_static_binaries.patch</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">spelling.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">use-native-getopt.patch</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">adapt-to-unversioned-libs.patch</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">fix_FTBFS_boost1.67.patch</span></pre>
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