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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/seqan2">Debian Med / seqan2</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqan2/commit/b04acc5722b803988ed5f866cb3cfdb7d1e2e02a">b04acc57</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-05T10:35:35Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">generation of CWL descriptions does not work and was deactivated for the moment
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/seqan2/commit/2f92c8c9bedda7c730dab99926f3484ea96908ea">2f92c8c9</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-12-05T12:33:54Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/seqan2/compare/3db687551ec2e61e4b413b03b046f22bca23f6ba...2f92c8c9bedda7c730dab99926f3484ea96908ea#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">seqan2 (2.4.0+dfsg-9) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">seqan2 (2.4.0+dfsg-9) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Generate the CWL descriptions automatically, now that CTDConverter is</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> packaged.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> (This does not work and was deactivated in favour of fixing bug #892223</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> quickly.)</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> [ Steve Langasek ]</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * use alignment-safe buffer handling</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,9 +19,8 @@ seqan2 (2.4.0+dfsg-9) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> automatically installed. This should not be necessary and should</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> be removed in next revision.)</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> * debian/rules: Fix PATH in attempt to create CWL descriptions</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> TODO: Fix generation of CWL descriptions</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Tue, 04 Dec 2018 11:19:05</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Wed, 05 Dec 2018 11:36:39</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">seqan2 (2.4.0+dfsg-8) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/seqan2/compare/3db687551ec2e61e4b413b03b046f22bca23f6ba...2f92c8c9bedda7c730dab99926f3484ea96908ea#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -78,14 +78,14 @@ override_dh_install-arch:</td>
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> find $(CURDIR)/debian/$(pkgapps) -type f -name LICENSE -delete || /bin/true</span>
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> find $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin -type f \</span>
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> -name "*.sh" | xargs chmod a+x</span>
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81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> for app in $$(ls $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin); \</span>
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82
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> do $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin/$${app} \</span>
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83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> --write-ctd $${app}.ctd && CTDConverter cwl -i $${app}.ctd \</span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> -o $(CURDIR)/debian/$(pkgapps)/usr/share/commonwl/${app}.cwl; \</span>
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85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> done;</span>
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86
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> rm *.ctd</span>
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<td class="diff-line-num old old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> find $(CURDIR)/debian/$(pkgapps)/usr/share/commonwl -type f \</span>
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88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> -name "*.cwl" | xargs chmod a+x</span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"><span class="idiff left right">#</span> for app in $$(ls $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin); \</span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"><span class="idiff left right">#</span> do $(CURDIR)/debian/$(pkgapps)/usr/lib/seqan/bin/$${app} \</span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"><span class="idiff left right">#</span> --write-ctd $${app}.ctd && CTDConverter cwl -i $${app}.ctd \</span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"><span class="idiff left right">#</span> -o $(CURDIR)/debian/$(pkgapps)/usr/share/commonwl/${app}.cwl; \</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"><span class="idiff left right">#</span> done;</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"><span class="idiff left right">#</span> rm *.ctd</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"><span class="idiff left right">#</span> find $(CURDIR)/debian/$(pkgapps)/usr/share/commonwl -type f \</span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"><span class="idiff left right">#</span> -name "*.cwl" | xargs chmod a+x</span>
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89
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"></span>
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90
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext">override_dh_auto_clean:</span>
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91
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> dh_auto_clean</span>
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