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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-entrez-direct">Debian Med / ncbi-entrez-direct</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/commit/76f9cae57f0fac6cdfdf38ec7204206acdb84860">76f9cae5</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2018-12-06T03:06:18Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ncbi-entrez-direct 10.5.20181204+ds-2: Actually B-D on dh-golang.
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#df84ab942da3c19ccd0c325e6867ace0e2b86f99">
debian/patches/debian-changes
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/commit/76f9cae57f0fac6cdfdf38ec7204206acdb84860#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ncbi-entrez-direct (10.5.20181204+ds-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * debian/control: Actually build-depend on dh-golang.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org> Wed, 05 Dec 2018 22:05:20 -0500</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">ncbi-entrez-direct (10.5.20181204+ds-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * New upstream release.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/commit/76f9cae57f0fac6cdfdf38ec7204206acdb84860#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,6 +4,7 @@ Uploaders: Aaron M. Ucko <ucko@debian.org></td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 10~),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> dh-golang,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> golang-any (>= 2:1.10~) | golang-1.10-go,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> golang-github-dataence-porter2-dev,</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> golang-github-fatih-color-dev,</span>
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<li id="df84ab942da3c19ccd0c325e6867ace0e2b86f99">
<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/commit/76f9cae57f0fac6cdfdf38ec7204206acdb84860#df84ab942da3c19ccd0c325e6867ace0e2b86f99"><strong>debian/patches/debian-changes</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,59 +5,10 @@ Description: <short summary of the patch></td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> information below has been extracted from the changelog. Adjust it or drop</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> it.</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> .</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> ncbi-entrez-direct (10.5.20181204+ds-<span class="idiff left right">1</span>) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> ncbi-entrez-direct (10.5.20181204+ds-<span class="idiff left right">2</span>) unstable; urgency=medium</span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> .</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> * New upstream release.</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> * (debian/).gitignore: Update per GOPATH change.</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> * debian/control:</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"> - Build-depend on dh-golang, golang-github-dataence-porter2-dev,</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> golang-github-fatih-color-dev, golang-github-klauspost-cpuid-dev,</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> golang-github-rainycape-unidecode-dev, and</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> golang-github-shirou-gopsutil-dev.</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> - Set Built-Using (with the help of dh-golang).</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> - Bump minimum Go version to 1.10 for strings.Builder.</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> - Depend on libxml-simple-perl.</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> - Repoint Vcs-{Browser,Git} at salsa.debian.org.</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> - Rules-Requires-Root: no (confirmed safe).</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> - Standards-Version: 4.2.1 (compliant at this point).</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> * debian/examples: Remove local storage/indexing scripts (considered</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> official enough for /usr/bin at this point), leaving only asp-* and</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"> has-asp, which promote non-free software; add test-pubmed-index.</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> * debian/man/{archive-pubmed,download-pubmed,download-sequence,eblast,</span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"> fetch-pubmed,index-pubmed,intersect-uid-lists,(local-)phrase-search,</span>
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<td class="diff-line-num old old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"> pm-clean,pm-erase,pm-invert,pm-log,pm-merge,pm-prepare,pm-promote,</span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"> pm-refresh,pm-repack,pm-stash,pm-uids,pm-verify,protein-neighbors,rchive,</span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"> stream-pubmed,transmute}.1: Document newly added tools.</span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"> * debian/man/{edirect,nquire,xtract}.1: Fix old documentation bugs.</span>
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<td class="diff-line-num old old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"> * debian/man/{efetch,efilter,elink,entrez-phrase-search,ftp-cp,ftp-ls,</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"> nquire,xtract}.1: Update for new release.</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"> * debian/rules:</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff"> - Change (autopopulated) GOPATH to meet dh-golang's expectations.</span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff"> - Belatedly run dh --with=golang to populate (misc:)Built-Using.</span>
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37
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"> - Clean up remaining cruft from when Go support was optional.</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"> - Pull github.com/surgebase/porter2 (aka gh.c/dataence/porter2),</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"> github.com/fatih/color (along with its dependencies</span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"> github.com/mattn/go-{colorable,isatty}), github.com/klauspost/cpuid,</span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="diff"> github.com/rainycape/unidecode (aliased, per rchive.go's expectations,</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"> to github.com/fiam/gounidecode/unidecode), github.com/shirou/gopsutil</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"> (along with its dependency golang.org/x/sys/unix), and our ersatz</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="diff"> github.com/pbnjay/memory into the path. (The rainycape version of</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="diff"> unidecode has the key advantages of being fresher and already packaged</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="diff"> for Debian.)</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="diff"> - Build rchive.go in addition to xtract.go; build both against a</span>
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48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="diff"> common.go factored out of xtract.go.</span>
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49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="diff"> - Install run-ncbi-converter (accidentally left off earlier).</span>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="diff"> - Flip Perl scripts back to running via /usr/bin/perl (from</span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="diff"> /usr/bin/env perl).</span>
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52
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="diff"> - Enforce use of Go version 1.10 or newer, even if the default is older.</span>
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<td class="diff-line-num old old_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
53
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="diff"> - Install local storage/indexing scripts to /usr/bin. (Closes: #901028.)</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="diff"> - Install new eblast wrapper (corresponding to new -blast mode) and</span>
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55
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="diff"> protein-neighbors script.</span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="diff"> * debian/vendor/github.com/pbnjay/memory/memory.go: New wrapper around</span>
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<td class="diff-line-num old old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="diff"> github.com/shirou/gopsutil/mem, filling in for a different third-party</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="diff"> library that lacks a declared license.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> * debian/control: Actually build-depend on dh-golang.</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff">Author: Aaron M. Ucko <ucko@debian.org></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/901028</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff">---</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff">The information above should follow the Patch Tagging Guidelines, please</span>
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