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GitLab

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<h3>

Martin Uecker pushed to branch patch-queue/master

at <a href="https://salsa.debian.org/med-team/bart">Debian Med / bart</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5eb5943e68da4373e58b141b32f5037eb7692c87">5eb5943e</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-24T12:52:09Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">version

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3a4fc5a7d8d26743906babeef7ada78aeed0f4a0">3a4fc5a7</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-24T12:52:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix typo

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0398c922efc6afd890ed53c59b356a6dedce84a3">0398c922</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-26T11:58:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add patch for version fix

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/cd648f4dd5c4989552af4ddff8f606bea1c49920">cd648f4d</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-26T18:30:51Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">autopkgtest

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/189acba6f6c51ea35fb7454baa7e8d19edfdedfb">189acba6</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-26T18:33:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ada4fe5f050fc6e3454ed1fcbea4f05f48263336">ada4fe5f</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2017-11-27T07:32:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Sponsored upload to unstable

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d8c19c06fe7d4bffef14d5b54a06b76de46a117a">d8c19c06</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-27T22:57:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">turn off some tests on some architectures

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/931ca19a1f89a24e39da952379a54d70698f0ac5">931ca19a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-28T19:04:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix misleading changelog

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/68091c24b0b87e90d609b811983ce978c4a25be2">68091c24</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-11-28T20:12:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: add option for debug level

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7353ba369cab656c4d95dd0cfefa3bbd5010dcf4">7353ba36</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-11-28T20:12:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: describe options

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/eed78e1e3a60ea49ed0fce01e12f4c402e095afe">eed78e1e</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-11-28T20:12:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: make IRGNM reduction factor configurable

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b95fe32cecb8e609c01c11be1b977226b616d4fe">b95fe32c</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-11-28T20:12:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: consistent name for image

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b4cf93438605813ca19b7229f071dcf7832cde1a">b4cf9343</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-11-28T20:12:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">noir/recon.c: rename img to x

since img in that case was actually the image and the coils together.

It now reflects standard usage: x is the variable optimized by the

IRGNM.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f727271e03b1a6d2431fdcf0d0fa60016f862fcb">f727271e</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-11-28T20:12:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">noir/recon: names consistent to header

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/928ff3a5795c965b83a09211db1f0d6f6289d66d">928ff3a5</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-11-28T20:12:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: move initialization to nlinv.c

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f3b492f24cd4e122f28c3677fc57b99fcbe9d4e8">f3b492f2</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-28T20:52:19Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">newer gcc on Mac

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/1e5b75016580fe7fe1544d23ad10f16fda34b2df">1e5b7501</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2017-11-28T21:20:59Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/072890a93b0b7b24e520abda1eff83f3a2845ea1">072890a9</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-28T23:13:45Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">build fix mac

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/bbf37f19202ba343b52ca2917760dfe272764627">bbf37f19</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-11-29T19:48:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove macro for type-safe use of const arrays as function arguments on old compilers

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3ffa91f43c49c7ab124d3293c5e14b819cd77b25">3ffa91f4</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-03T12:01:28Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove build test for homebrew

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f69f2b6ec801ee1706db17e3b278a60d96338159">f69f2b6e</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2017-12-03T21:08:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ecalib: add option to turn off phase rotation

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/62b103a0142b2b44ed1136e08a50e087ce62a21f">62b103a0</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2017-12-04T08:41:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">homodyne: add option for uncentered ffts (#109)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/fbc2e46497d3fb1eb910e054d82b54e65bc4748d">fbc2e464</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-04T20:11:19Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add noreturn to error function

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b015c7b8cdb2618eec412504e745a7c8844aa933">b015c7b8</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-05T08:35:26Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">minor style changes

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/dad94e1bcf64a4cb026f8fb3f135a731d2bbaa99">dad94e1b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-05T08:35:26Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove unneeded omp.h header

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f504015cae71245c0251f76edd5fe7f1d0a30c33">f504015c</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-05T08:35:26Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove redundant vecop

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/bb8d5fdf476b05f26ebb79e9499ebfb9a463c566">bb8d5fdf</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-05T09:05:35Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">hide noreturn from cuda

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/1281d1c5d1990a58e2644de95709e8fe120a73a3">1281d1c5</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-12-05T11:59:44Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: properly initialize pointer as NULL

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/fcfa3a9f737139282e15e808d0d59e37c391182e">fcfa3a9f</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-12-05T12:00:19Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: add option to provide initialization

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0a806e87d2ae1a85e4f73ffc763503692fdead90">0a806e87</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-12-05T12:00:58Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">irgnm: improve debug output

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/51cb70eeab1fef65dd249ff036fee3f18d28be91">51cb70ee</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-12-05T12:02:10Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">irgnm: add callback

The irgnm can now take a callback.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a274dcf43d46480cbba68fe895d6dda0f417a9f6">a274dcf4</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-12-05T12:02:40Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: add timing output

nlinv can now calculate how long the reconstruction took

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f909f976da24c146de8e3f467a201509f429bd23">f909f976</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2017-12-07T16:34:41Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: sensitivity output also when using GPU (#111)

The code now also outputs the sensitivites calculted by nlinv when run

on the GPU. This is possible by excplicitly copying data.</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/97634388da57a3e49fcaf8ffb63022a07add218c">97634388</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2017-12-08T01:57:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use vecop for zabs

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d50f985a5537caeec44e71b43f4cfdb2235799d6">d50f985a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-08T09:13:07Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix bug for gpu-mode of cdiag operator

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/495613c5749e53c595ee0305d15a59a72200ea4b">495613c5</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2017-12-10T11:12:25Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">replace free with xfree

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/669800c80966e013c384069bf0dc9c8a287f97a1">669800c8</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-21T10:24:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update default compiler on Mac OS X (closes #113)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/df89310619096f8fac56f89e02d145c7388f6192">df893106</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-21T10:45:21Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">change default prefix to /usr/local/

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/72ca7ca1e1ce6f898d0652655a7aefa68bd1ccdb">72ca7ca1</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-21T10:46:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">turn off TOOLBOX_PATH overriding by default

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2a08ea1ff5b8e827331dd1fba92ecc4d627810b2">2a08ea1f</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-21T11:19:59Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">document clang issues

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2c0b132fc136beff00031ced6217d916d89c0f96">2c0b132f</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-21T17:13:44Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">uncomment build of stand alone commands for CMake

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e0e7b0297953dac37d8e4b049c182365c608c8c7">e0e7b029</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-21T17:13:44Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: turn off matlab support by default

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/22c87c6a424f72b95cacb36328384234075dc803">22c87c6a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-21T17:13:44Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cmake: minimal c version is gnu11

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/176055aab952422b4f6899eb1ed29ed7aa2a1dd9">176055aa</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-24T20:24:39Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix obvious bug in blockproc

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2c40b79f175a8fced9aa5ef0c1161bcf5bc47d65">2c40b79f</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-24T21:24:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add missing free

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a0f01dba540c2de6d6254f405eb706c40d22c99d">a0f01dba</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-25T19:59:20Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add script for memory-economic use of espirit

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3c1c2eb7cc3aaac92c6617d10d375ec630d9cc42">3c1c2eb7</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T18:59:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">multind: nested functions

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/626cd6fec974731fa987fd82483d68d018f36b1f">626cd6fe</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T19:00:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">optimize: nested functions

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/74f1339933d60f5e6aa4a9756694344ffd320962">74f13399</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T19:00:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nested functions: merge fixes

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2dbc8471862b55659211814d33d96b9517713c77">2dbc8471</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T19:00:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">make clang compatible

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/31c90b28be4b2d9ffb2380ce019398622d819ff5">31c90b28</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T19:00:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">travis

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/47acbcb124e92aef2a9edaf94ff92222dd13d31b">47acbcb1</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T19:00:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">compiler check for cuda

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0c8d2b8823a5399b97e50b90159c0f7f5f856579">0c8d2b88</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T19:00:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cuda fix

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b3e3c60249d3d8c4c2cf0beb3d726ed57e049c40">b3e3c602</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T19:59:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add function to detect nontrivial strides

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3af86fca19e60f1ac15cde08a1f92182cef12043">3af86fca</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T20:03:30Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CAST_MAYBE

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b0eff0295eb9da7df50700e753783c123f780606">b0eff029</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-01-29T20:03:30Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix run-time type check (zero-sized variables may have same address on gcc)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a2c7270a24e79704a38c6a28d672ee3475c8118e">a2c7270a</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-02-08T15:22:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">admm: add parameter selection by residual balancing (#114)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3b52fa1df7fb4d973ed36a29ab14ac48f05de876">3b52fa1d</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-08T21:20:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">implement md_(z)smul using direct calls to vecops

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/8467cc388ee79e46180f893245b783179867bdb2">8467cc38</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-02-08T23:31:47Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">linops/fmac.c: add gpu tensor

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/19948d8f9586e54fc1c25c1c79bf2480087e4efd">19948d8f</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-10T21:09:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove some use_gpu flags

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/81549d389e8adbdc5c4746d8ac7e6f78f171fc4d">81549d38</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-10T21:09:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove some more use_gpu flags

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7b8fea4da6732d791b37b480f7ee147f62800869">7b8fea4d</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-10T21:09:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove unused undersampled fft operator

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0651f5945a48cdfd9661ccb83a61f225f1ac0ecb">0651f594</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-10T21:09:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove more use_gpu flags

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/90339c8b13b81ef826f49e6b052a547e65747cd8">90339c8b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-10T21:09:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove more use_gpu flags

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/82f18f355193e51b796767c5de53f52a9337debf">82f18f35</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-10T21:13:57Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">minor gpu gix

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/66294ca1fe07a015fc72c56f4091f35abaaa8dc7">66294ca1</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-10T22:28:29Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add benchmark and test for md_fft

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f013618bc071da354d758ce37f48ad5c7de63e17">f013618b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-11T11:02:20Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add benchmarks for fft and fftmod

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/cd26f403241099686f093f30bdca9a76e6e0f0be">cd26f403</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-11T15:00:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">error messages for impossible configurations

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c3164588e90c69c4ea19c09ba88438fd7887df6c">c3164588</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-11T16:41:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">missing identity operator

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c388969118da893f2cb0fe79472f0ecab3780fc1">c3889691</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-02-20T21:23:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add nufft according to conventional definition

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/50a4e7af18bcdf65809aef8d48d48a2cef9166de">50a4e7af</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-03-16T16:22:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: option for different pattern for each coil

this is needed when usinc virtual-conjugate coils, for example

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e0a3a237bb51044af6559d5259a6c5f01e9a89b7">e0a3a237</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-03-16T16:22:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: add ENLIVE support

This commit adds ENLIVE to the exisiting nlinv code.

ENLIVE is a method for allowing multiple sets of images and coil

sensitivity maps in the reconstruction, similar to multiple ESPIRiT

maps.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b1f62b4a9fed8b1fd616bc13646d506ff106c1df">b1f62b4a</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-03-16T16:22:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: remove more unused water/fat code

Commit 2d31b70bfbb9d4226950e1a3b34610eaa9f9146e removed most water/fat

code from nlinv. Relics were the sign_dims in model.c and the

CSHIFT_FLAG. This commit removes those, too.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f967e85f275d00ff31d675c0d3dabf042317766f">f967e85f</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-03-16T16:22:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: add (hidden) option to specify coil weighting parameters

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f4d3f32cfe14ad7fa2e1e51ca2bd8b3ec317078b">f4d3f32c</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-03-21T20:02:35Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">style changes

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5dc01c5c53fb7133f6353cfe1f9b7b34ef74f29c">5dc01c5c</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-03-21T20:24:10Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">style

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/9d44eecbab7552a6e51d662930fdbd5836ef0c91">9d44eecb</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-08T15:28:40Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update references

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0c2a6503f432cdfd88478c347ce98fe11414e940">0c2a6503</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-09T09:15:47Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump version

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/714b5be248f7ac17e5402ce21048ad14f1705d1f">714b5be2</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-04-10T07:21:45Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">optreg: add non-negative constraint

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7bd8844998668d07e623d654458cc4fed5afc98b">7bd88449</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-04-10T10:02:52Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use long for tenmul_dims

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/75957eeb634f3a9201a61e22d024681f1a64d2bf">75957eeb</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-04-10T18:48:45Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">vecops: add smax for scalar max

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d149bc84b65d3c032fd8de198a68600399ed6cc8">d149bc84</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-04-19T13:02:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update mat2cfl for new Matlab interleaved complex API

Signed-off-by: Nguyen Damien <damien.nguyen@unibas.ch>

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/458dee0bf4eb13688650389c9fa8509867cd8173">458dee0b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T18:46:56Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'v0.4.03'

version 0.4.03

Changes:

        - nlinv: add ENLIVE support (Christian Holme)

        - nlinv: add (hidden) option to specify coil weighting parameters (Christian Holme)

        - nlinv: option for different pattern for each coil (Christian Holme)

        - nlinv: sensitivity output also when using GPU (Christian Holme)

        - nlinv: add timing output (Christian Holme)

        - nlinv: add option for debug level (Christian Holme)

        - nlinv: add option to provide initialization (Christian Holme)

        - nlinv: make IRGNM reduction factor configurable (Christian Holme)

        - nufft: add nufft according to conventional definition

        - ecalib: add option to turn off phase rotation (Jonathan Tamir)

        - homodyne: add option for uncentered ffts (Jonathan Tamir)

        - bench: add benchmarks for fft, fftmod, md_fft

        - library: admm: add parameter selection by residual balancing (Jonathan Tamir)

        - library: add function to detect nontrivial strides

        - library: fix bug for gpu-mode of cdiag operator

        - library: irgnm: add callback (Christian Holme)

        - general: add script for memory-economic use of espirit

        - build: updates and fixes for CMake

        - build: build fixes on Mac OS X

        - many other bug fixes and improvements

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/44d465147135b2a384b90d86351401b3b3bf65d8">44d46514</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T18:48:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove version patch

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/1f025ffecb7e96abda63638a0818d52aacf40153">1f025ffe</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T18:48:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update copyright file

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/15786d3620e91a626c83c2df9c925d11594bc77f">15786d36</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T18:48:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix install target

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7c58306100189fed6a4a8e2de46f441ee400772a">7c583061</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T18:48:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update standards version

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/36d855dd3b7fa8b1b0098b59818e60f421f067b3">36d855dd</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T18:48:10Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">secure url for copyright format

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/24215223daa103a2dbff11a4b9697185f370ceb2">24215223</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T18:48:27Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">changelog

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0a4b3707518f964a231db09d46bb08d349a54a96">0a4b3707</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T19:32:54Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">really fix install

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/303ae9a2aa77a0e9268b33c8fc087c4ae0a66deb">303ae9a2</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-28T19:47:19Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">points vcs to salsa

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e5c8d43ce0fb17675aa6cd415fc9739cc59d6a4b">e5c8d43c</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2018-04-28T20:02:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Vcs-Browser has no .git extension

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c52eb1a3d44e09fa17ab87562d1f8f8c82658b58">c52eb1a3</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2018-04-28T20:03:05Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7c3098a54df9f5d84e7e2b4b31c772b006527bd4">7c3098a5</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2018-04-28T20:07:57Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/4262843878533b1effaf82ae0e390593593be183">42628438</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T09:29:28Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add parallelization to fftmod

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d03aaa486b60edc4f36894f066f6202d5457d752">d03aaa48</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T09:41:47Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update operators

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0c87b89ae61af03bacbecd47a8fc235277131994">0c87b89a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T09:45:59Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">linop null and plus

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/31616e95e761e1144b9d6beef3bd4ab12e040f96">31616e95</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T09:49:50Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">include guards for shrdptr.h

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/14819db599c94fb1ccd469e6f58e8aefd8fedc9a">14819db5</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T09:52:30Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">warnings in ops

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f0acbb12cf91fb2b391621bbfef24e103c01debf">f0acbb12</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T10:22:00Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update nonlinear operator framework

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/573e6038c8b7e24ecc49171f1090265d885111de">573e6038</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T10:34:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add zexp nonlinear operator

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/bc8a650fe0285c4e6cd1c5aa200d140fa8571910">bc8a650f</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T10:38:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add md_zexp

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a521ed8f2674fcf73db2bb6fa204f7ae6b4c0cca">a521ed8f</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T10:38:57Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add tenmul operator

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/dc3c19be8b9176129d0bbc0972f1999084177067">dc3c19be</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T10:40:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">run-time type check: improve error message

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d328a05e64dd07bf597891a4006fb0ef18323eef">d328a05e</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T10:43:23Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add tests for nonlinear operators

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ed1df142818bab83c28c1a7ac93463a683c0e540">ed1df142</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T13:29:35Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add safe_isnanf which protects against optimization

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2ae81ea2e416c8951817161adbb57ca2a910727c">2ae81ea2</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T16:28:06Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update compiler on travis

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c0fd3d6a34f1712f6f95d45f4f5f0300d91048cf">c0fd3d6a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T16:43:25Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update iovec

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/89f2ddecd5b296946b11fad5af30a1c5169c731d">89f2ddec</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T16:48:01Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update flpmath and vecops

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5c6ce3a0fbe93a5a2ec7caf5cd1ba86db20bcfd1">5c6ce3a0</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-04-29T16:54:18Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add test for linop_plus

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/1fe524c0fd6f9a1d6631d7d7da26a1251e9ebb89">1fe524c0</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-05-03T19:51:08Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add missing file to libbart-dev to fix bart-view

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3482b4612ab769397c30ec10bb950d66226ae7a2">3482b461</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2018-05-04T17:05:46Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2f51dba187c1c7d86fba568f911eea094e0a3763">2f51dba1</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-05-27T20:15:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">num/flpmath: (Complex) sum along specified dimensions

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/973a93d0e875c167650fcec207ba439591d84dec">973a93d0</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-05-27T20:15:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">num/gpuops: GPU memory usage print function

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b06207de5df3e51f07f700aba2df30ed9dc15375">b06207de</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-05-27T20:15:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">gpuops: Memory print function

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/733487619b64d4c54bac50cae179bed5093719da">73348761</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-05-28T12:25:20Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">gpu fixes

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a8db6f5d0162ef616c9e00398057733faf1b9b14">a8db6f5d</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-05-28T12:25:20Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix md_zlessequal

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/62cf0a8421cdff89be7c409861038d430c8de192">62cf0a84</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-05-31T20:40:06Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">num/ops.c: properly guard OpenMP expressions (#123)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/57e33fddf96166c3b02c6af58d1884df3026d06a">57e33fdd</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-05-31T20:42:34Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added wave-shuffling + fixes to wavepsf (#122)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0c6a30114abef6d8543ef2e77537e9cda2d046c2">0c6a3011</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-06-01T05:42:06Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add hogwild opt + wavelet randshift set to true

- Added hogwild option to command line interface.

- Set wavelet->randshift to true after talking to Frank.

- Minor cosmetic changes.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/028ff76d9b56cb16df7ebdc1192d6fea1d90944d">028ff76d</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-06-15T06:36:29Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">toimg: add windowing and option to re-scale images to full dynamic range (#125)

* toimg: add windowing and option to re-scale images to full dynamic range</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d3da08328e1b8711d00b97e0f1f08e2fc6205bb6">d3da0832</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-06-29T15:14:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">wshfl updates

- Applies fftmod onto data table to avoid using fftc in linops.

- Reconstruction now uses iter2 to be consistent with pics.

- Formatting changes.

- Remove the GPU option.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5331cb53bf8397184b77a6dd464e2b38729f1820">5331cb53</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-06-29T15:14:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added command poly

Convenience command like zeroes and ones to generate arrays with

simple patterns like [0, 1, 2, ... L-1].

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/cbda5774e2078d8f546d2b40b47f4b72373052fd">cbda5774</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-06-29T15:14:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added rounding to reorder related arguements to avoid interger related errors

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b53e1464861eed67627b78c64c7d43aaa1a0fdfa">b53e1464</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-06-29T15:14:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added test for wshfl

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/dd7988979dfb5642e950a5d9c463e72a01775fea">dd798897</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-06-29T17:34:55Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">document minimum compiler version

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/9a83657c8296140077c9da3745c70908aa28d05e">9a83657c</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-06-29T17:44:57Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">help for l1-Fourier

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2e8c6f4b7d32a3d593387740d347a5d7a6590494">2e8c6f4b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-06-29T17:53:07Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add missing copyright headers

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ea2dbff40005c2b0008709ff23196f9d998be71d">ea2dbff4</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-06-29T19:06:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add test for batch nufft

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2ef396b31ae5679ef21cf78b8d9df2c4998a36b1">2ef396b3</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-06-30T15:27:43Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">rename algo enum constants

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/15ac5472f8f74394d0f828cbd720b2a0c7c3858d">15ac5472</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-06-30T19:24:01Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">move initialization of italgos in its own function

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a55b95265db53ecbe4a6c0cd656aae2bfb1ff5ee">a55b9526</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-06-30T20:33:10Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">move italgo init into its own file

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/9e7fbf31ee8d0c7b2d7f180a227435ce7ac1764f">9e7fbf31</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-01T12:08:45Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">memory management

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0d1200c46a982db5c9c40a3cfaa61f1678860502">0d1200c4</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-01T12:48:16Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refactor choice of algorithm

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b8f797049d75195085ed0a3305539b718db546cc">b8f79704</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-01T13:36:59Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">make basis pursuit possible for noncartesian data

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b7c8484419a7c6873a279039d503982fd0582c4d">b7c84844</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-07T07:02:06Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix issue with over-sized trajectories

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/186fbd5e7ec1aa95a142e02a21c561f18afe105f">186fbd5e</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-07T11:23:16Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">propagate periodic flag to psf

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/978a67a078ce039795203158fbdd77e8356860c9">978a67a0</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-23T20:37:44Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix memory leaks in nonlinear operator chains

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/958893139e811ea4278f31b8e8943389bc34520c">95889313</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-23T21:50:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix noreturn issue for c++

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/50244f05e780c5a7d84b523339c3cdb9a52ad33a">50244f05</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-23T22:23:40Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refactor gridding

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/abbfd3efa41160e60cbf2239b840c17c5e207347">abbfd3ef</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-23T22:36:48Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">make clang compatible

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/74d5b026c15c6821bb736ed664fd4b553f6d2a3b">74d5b026</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-25T15:17:27Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bring unit-testing on CMake up to par with Makefile

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0618e748bc1b7be3441ec47e4ba4c2b6013147c7">0618e748</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-26T08:01:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove abort() and replace exit() with return values

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/1cba6ca8a5187138e999377a970f3d640adab6bd">1cba6ca8</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-26T12:10:43Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ecalib: add debug_level argument

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a2330ca3a5e03e67ccf2a0cdbaae68c790fa8350">a2330ca3</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-26T20:11:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Change getopt to ya_getopt and modify cmdlines fct to return values

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f663440379dda08b6305a38ef65e464ac6aa821b">f6634403</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-26T20:14:31Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Prepare debug_printf* functions for external log backends

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/bfddec7fdf0c4e8aca7bdbd2ffa277dd575646f6">bfddec7f</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-26T20:17:56Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add support for external logging backends

For now supported backends are

  - Siemens

  - GE (still experimental)

  - Gadgetron

NB: Compilation for the Siemens backend requires the file

    src/misc/UTrace.cc that can be found on the Siemens IDEA board

    at the URL below:

    https://www.mr-idea.com/communities/idea/Lists/Customer/UTrace.cc

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/30a8971daecb90c3edbf4df34cf505969da802bc">30a8971d</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-27T09:34:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">minor fixes and style changes

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/62dac483ecc0df5819df66eb84f98f94ebb2a693">62dac483</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-27T10:28:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add missing newlines in error messages

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5a2224a0dff111c373fc3e35fa1059fb298b750e">5a2224a0</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-27T10:33:50Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add support for in-memory CFL files

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ee06c8427583ff6f6d3319db51ed2a600b28ba04">ee06c842</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-27T12:12:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix warnings, build, coding style, rewrite list of i/o files

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/aa78612c7c428eff58026065f8262ca860bbc324">aa78612c</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-27T12:43:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Miscellaneous changes to the CMake  build systems

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3c71c1fe339aa8e1bc6200f45cd7405040b0918b">3c71c1fe</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-27T13:25:01Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix for next_powerof2 (thanks to Nguyen Damien)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0ebcd52b81e9b1ae34e8bd6a7b6a180a32fbca4e">0ebcd52b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T14:08:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cc: don't warn when correct option is used

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/90112eb8ca9bcb8ac82890e4863d1fb1c55490aa">90112eb8</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T14:08:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add FIXME

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a8507500014193d58c3c1b295f121bd8eafc3850">a8507500</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T14:08:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add complex-conjugate for matrix

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/6f050bc5cfcb4c4242524d14e5ff9bb3633cde8c">6f050bc5</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T14:08:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix bug in phase rotation (now improved results)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d994489a28f4465213a9fc7dda8ef0b8e0b4f8b0">d994489a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T14:08:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">reactivate old coil compression test

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0df678d5c681309913aa863b6dc10f39b83bc34a">0df678d5</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T14:08:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add phase rotation tests

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f9c6bb2006db3f7c0226c6361a05f4f3c0cc14c2">f9c6bb20</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T16:33:34Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">enhance copy command to do simple copies

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e059a18841579e8b2ac4a6d977189e198d90e89a">e059a188</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T21:39:28Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">longjmp-based error handling (loosely based on patch by Damien Nguyen)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5812919398e3dea433035428c28a3083345920ee">58129193</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T21:39:34Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ismrmrd fix (thanks to Damien Nguyen)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2da0fa3e6a770726c00743580078ae00c8fe3233">2da0fa3e</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T21:40:10Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">introduce bart_printf

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c1d435575ad585a093883bd79aa0cdf3d3fb57b1">c1d43557</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T21:40:51Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add entry point for calling bart commands when used as a library

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/49a1da320764466ae258df329bf101982d514f74">49a1da32</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-30T22:00:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add pyBART Python module and bartmain library

- bartmain (CMake only for now) is a library containing all BART

  commands in a single library

- pyBART is a "native" Python module based on BART

(slightly edited - Martin Uecker)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/67910d319f4b639f0c878219de9fde059709a8f7">67910d31</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-30T22:00:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix some runtime issues with clang

Signed-off-by: Nguyen Damien <damien.nguyen@unibas.ch>

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/62d30c91fbeb3f34b22fcaa767389eb6a73b7b41">62d30c91</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-07-30T22:00:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add comment

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/67b4d835201ad2b0383eb21bdcd745f7270e0975">67b4d835</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-31T13:21:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix ENABLE_LONGJUMP option in CMake + bug in debug_vprintf_trace

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7ee99446844a21fc870c1c324ed73e954fe49604">7ee99446</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-07-31T13:24:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">iter/italgos: add alternating minimization

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/10b0d6f31c6469f627c89932d5ae1375fd2e4290">10b0d6f3</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-07-31T13:24:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">iter/iter4: add iter4_altmin interface

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/97e7e36cce67064b663851bfd8431928021797ad">97e7e36c</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-07-31T13:24:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlops/tenmul: add GPU support

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/9cb7ab7e8c14fbe7f8d9156f0b08fd681587f9ad">9cb7ab7e</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-07-31T13:24:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlop: properly work with GPU

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7a6cb6ac1277c532310aeefd899dd23c8e891fe5">7a6cb6ac</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-07-31T13:24:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">linop: only free if non-NULL

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5b9f2888b2391249fc54768c39bcb8672ef0f206">5b9f2888</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-07-31T13:24:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">italgos: output number of FISTA iterations

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2a0fee88738922c78e7cb1ad9a654c976dfce368">2a0fee88</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-07-31T13:24:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">italgos.c: output number of CG steps

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/62b43445b1a0dd2b240f3b919f7d7a14149ecdbe">62b43445</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-07-31T13:27:53Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix a few issues with pyBART python module

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/aa6ec9e43be107ab59db2a880b3d17a9fa333753">aa6ec9e4</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-08-02T14:24:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlops/nlop.c: properly pass through NULL for normal and norm_inv

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/734145e2558a0f5909faf1250e380c97658fd8af">734145e2</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-08-02T14:24:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">linop.c: linop_get_data now performs type check

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/761ab12546421689aa1d4b5cea7bdca5eb7b2e05">761ab125</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-02T19:10:07Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add test for null/zero operators

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2dd3382d84a3f9492c7eec753986e00a6698c990">2dd3382d</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-02T19:10:51Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">linop_null_create and test

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7c10605a74acb7cb01a8a905685d32a8ed7ce23e">7c10605a</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-08-03T11:57:54Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">linops: optimize linop_plus if one of the arguments is linop_null

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ac4cfaaa370dd765459ac1670018cd79cf8324f3">ac4cfaaa</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-08-03T12:01:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nlinv: update to new non-linear operator interface

This code was originally written by Martin Uecker

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/685e77ba2fd511668f9bbfb43b6d861ee4d40e1a">685e77ba</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-08-03T12:01:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">noir/model.c: properly free arrays and ops

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7931f538bcb8bfb1f7dd836435244d502d59dcf0">7931f538</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-08-03T12:01:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">iter3.c: simplify

we already have iter_op_s's, no need to create extra functions to call

them

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ccb9947b7324faa8fde7c79738717aa38ba3838a">ccb9947b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-07T15:53:47Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix bug in septrafo (broke cdf97 wavelets)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e5e073d20c900b318721e0c261b1798ea0e2bac6">e5e073d2</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-07T18:09:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add test for cdf97

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e0be139c3c540ce051800befc6a363fc7241cb55">e0be139c</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-08T10:05:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rename CMake options with prefix BART_

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/6e1063e4bd29f8613f2d890670f8c880a6d615cd">6e1063e4</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-08T10:05:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: add support for NOLAPACKE

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/9672046d08d98017b53e9b0a45796f2a47a1b369">9672046d</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-08T10:05:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: only use C++ if needed + add clang flags + fix python3...

... + use CMAKE_POSITION_INDEPENDENT_CODE variable

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a1344fb53012f1e6c431db02705fe4aef7d58272">a1344fb5</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-08T10:05:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update Travis CI with some CMake builds

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/695949b2350461ea0b01aef02c6a7d8ea25a8285">695949b2</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-08T10:05:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: use imported targets + update FindXXX.cmake...

... + add support for the AMD libFlame library

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/584e42acdbdb6e77fd9d4f7b374ea1f38ffe8940">584e42ac</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-08T10:05:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update .travis.yml

add back test for parallel make</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/53923792f2cda9e1ef4be7ef51d299a2ce02a10b">53923792</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-08T17:38:54Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: fix automatic detection of BLAS vendor

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3531aabf229b394cbe01955183ed88e3833eda04">3531aabf</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-08-09T10:57:52Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix various memory leaks

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b46d8efda9d6d69b3922646902abd5531caa3219">b46d8efd</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-09T11:00:29Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove unused data structure

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7cca41ac178eb0a5cc8499de611fad9efbf47c5f">7cca41ac</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-10T11:14:21Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix compilation with Gadgetron + fix issues with external logging...

... + fix one last issue with FindlibFlame.cmake.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a57a0bb4f9b78306df6585545d3795519babfef7">a57a0bb4</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-08-10T11:14:57Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adding additional options + minor changes to wshfl

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/07c1760018fc945cda564053209585a85babf410">07c17600</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-14T17:18:07Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: add proper exporting of BART + some refactoring

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/9d55fca60bc4ad1c4242c20b3ad3dc6c757851e9">9d55fca6</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-17T09:54:54Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: update CUDA detection and update FindFFTW.cmake

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5ea0a5aea93af905f94a18c5ccef8903d234cffb">5ea0a5ae</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-17T09:54:54Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">mmiocc: update to C++11 + re-enable debug output

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/d1b41fc06fbfe022762d68e520b2cc0d9239f889">d1b41fc0</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-19T06:58:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove unused header

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/6d0c7f2bad7dc4100973dd7df1feefe6704e2f7e">6d0c7f2b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-19T08:13:29Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">style

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0ae18e64d9b282bcc8090985aa7db221fac0a22c">0ae18e64</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-19T08:13:29Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use auto

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/94d848f8c00e64569936b44575787203b2b18595">94d848f8</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-20T12:14:55Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: cleaning up and small fixes

CMake build tested with all major versions of CMake from 2.8.12

up to 3.12.1

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/949a5882ab349dbd91a9e4df22995329f09a71dc">949a5882</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-20T12:14:55Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: properly use version variables from CMake

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5309329e5fdc9636d1bfc1835e86a162d01d93ae">5309329e</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-20T12:14:55Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake/CPack: introduce CPack to easily package BART

With the help of CPack, packaging BART as ZIP, self-extracting TGZ

archives, DEB or RPM packages on Linux or even as installers under

Windows should be much easier.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5d59673290462b9826ac1cf4df95a4f38b750ea8">5d596732</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-20T12:14:55Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: add integration tests contained in tests/*.mk files

Building the target `integration` will run all integration tests,

while building `ingtegration_XXX` where `XXX` is the basename of one

of the test rule files (ie. XXX.mk), will run only those particular

tests.

Not all integration tests have been added to the CMake build due to

some limitations of the current approach. The ones currently missing

are:

  - estdelay

  - join

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/6bcab4fe6a899db04fbc46fea279215a9b75dd45">6bcab4fe</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-08-23T15:45:11Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">traj: Option for asymmetric trajectories

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/4d2de8945ba31aca8e69413ee497e5ef45cc4945">4d2de894</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-08-23T15:45:11Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">traj: Half circle golden-ratio sampling

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5f8db5ba7dccf7673b124a095ce6aab2c8b4ffaf">5f8db5ba</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-08-23T15:45:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">simu/shepplogan: Fix inconsistency between img-phantom and k-phantom for rectangles

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/63551802e636737be2165167d68b126415a0b857">63551802</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-23T15:45:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add md_zmul2 benchmark

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0dd6b0e9ed3cb7798a252d70f83abe0f6e1146eb">0dd6b0e9</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-23T15:45:12Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add option to select benchmarks using bitmask

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/491175fbfaf728a61a8c08150adc6d6df9ebb237">491175fb</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-08-26T08:53:11Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">only use cppflags for includes and use iquote

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/259b791abc79b22e6d791ee4e61b1b8843107d79">259b791a</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-29T06:03:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: fix version.inc + CUDA for users importing BART

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ff52f102f673300c05d2f78c6b95a198065bbe10">ff52f102</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-29T06:03:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: add static analysis tools

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7b4a056dd2dbf5b347549966d58c2dbbd639954f">7b4a056d</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-29T06:03:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: fix compilation flags + add modern OpenMP target

- Make compilation of main functions more similar to the Makefile

  build

- Prefer generator-expressions for compiler flags for recent CMake

  versions

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/6b1d74eb9b149da65aa04554663e09ba37b9a023">6b1d74eb</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-08-29T06:03:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update CMake buildig guide

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7d1c65e3a1a908e8eac866b3c99c97ce81645468">7d1c65e3</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-09-03T11:44:51Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add geometric object phantom

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7652f09a167b73e20bfe4113ad2f84456c336e9b">7652f09a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-09-03T16:17:46Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">error message for no GPU

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/89591882f3a38989b330dcd7a19e53de18f49e0b">89591882</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-09-05T11:50:28Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix for optimized strided copy on GPU (thanks to Simon Yeung)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5cd5307fcbaf38bd8a4a16a4b528b114bd7ea7eb">5cd5307f</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-09-06T15:27:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: general fixes and documentation update of FindXXX.cmake files

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0498bfa86a683bf2f6cd629ff092b627cb1082d9">0498bfa8</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-09-06T15:27:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: backport FindPython from CMake 3.12 to all other version

Also fixed a linking bug for pyBART

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/fc0d7b8d8d402fc334c305d01618fd2385fb58e0">fc0d7b8d</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-09-06T15:27:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update CMake building guide

Following a question from J. Tamir, added more precisions on how to

compile with CMake when using libraries in non-standard locations.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/bcdf14cf5d93b59084009fbc882a79122fb83e76">bcdf14cf</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-09-08T11:50:33Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake & pyBART: some minor fixes thanks to @jtamir

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a8d5e35f968b83e7a8bfcbfe55a91d229e140eca">a8d5e35f</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-09-17T06:03:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">pyBART: fix some runtime issues + add better documentation

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/757dc7fa8f6c11851b929752813b206c8b455749">757dc7fa</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-09-18T06:02:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added parallel to kernel_adjoint

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0dcce0fbc6bd8455bc0efad76cdfb4c6ac641746">0dcce0fb</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-09-18T06:02:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Initial commit for wshfl with gpu

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c441dfbafa8ab7de54a210badf76dc058dfe18e0">c441dfba</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-09-18T06:02:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">When using GPU, applied repmat to sampling-temporal kernel for speedup

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e35ccef4e96cdccae2d799a7bdeaf6e1cc7a9b2f">e35ccef4</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-09-18T06:02:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added GPU support for max eigenvalue

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/076acd52d800c6dead4ff8a86b1f354e5067982d">076acd52</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-09-18T06:02:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CUDA check before using maximum eigenvalue

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f59a64cc6c318e24ed7be7c99fe274e1633188f9">f59a64cc</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-09-18T06:02:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added openmp flag test in wshfl

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/24b81c41c094024476528414d3ba2d59a9a6c6e6">24b81c41</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-09-18T06:02:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Real value constraint to wshfl

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2cef54411139558496d1f40456e91414f06f34ce">2cef5441</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-09-24T18:54:40Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">wshfl: ifdef code style

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0f516dd6f5066dae66d7ef863b1824bceb39264f">0f516dd6</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-09-24T18:55:00Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">wshfl: fix warning without gpu

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/6ccbc65394d08cd3128ee9710ab8be5193b5fa1d">6ccbc653</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-06T15:08:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">pyBART: general fixes / mmiocc: add missing line returns

pyBART fixes:

  - fix array ordering of returned values

  - properly unload memory from on-disk CFL files

  - add get/set functions for the debugging level

  - update documentation

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/be03a33076760416499be5437f29796a489c2e18">be03a330</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-06T15:08:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">CMake: fix Python executable for tests + other fixes

Fixes include:

- Using C++14 since BART requires GCC >= 5.0

- Removing debug postfix for pyBART

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/00ccf2010120a149ee60d63f6e0cf0a49678925a">00ccf201</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-06T15:08:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">pyBART & mmmiocc: general fixes and introduce pybind11

- pyBART now relies on pybind11 for easier handling of the Python

  API and is now written in C++

- Overall, pyBART should better manage the memory it receives as

  input, as well as the ones it outputs.

- Failure to load a memory CFL file is now properly treated as an

  error in mmio.c

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f61a747c668aec6a7776d296d48be0953fa85d6e">f61a747c</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-06T15:08:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add integration tests for pyBART

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e550dcfffe16fcdfe5d25bbbbef0327b1098937b">e550dcff</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-06T15:08:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">pyBART: re-add cleanup_memory() and fix data ordering

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e8c537dea0a3c6104bbcfe818eac838f60500079">e8c537de</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-06T15:08:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">mmiocc: fix bug when overwriting files

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/0f469fb4f0fb1b6f829b91ee880f796e9b678c30">0f469fb4</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-06T15:08:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">pyBART: use proper cleanup routines for Python3

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/629bc6ca39711f92eb8bc925e3a32991bda6b5e8">629bc6ca</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-10-08T07:23:10Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">itsense: fix float size bug and add test

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/852a340d10fc1fbc190810ef04749aeed6d2b6c0">852a340d</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-10-13T21:57:28Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add mkl support (addresses #164)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/078d80128046189a62b9dd5cf6d26f877e69c0a4">078d8012</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-10-18T20:39:44Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">pyBART & mmiocc: fix data ordering for Python arrays

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/fa92a4f70c58da9c8e79ef3a0b435048dafda4c9">fa92a4f7</a></strong>

<div>

<span>by Sebastian Rosenzweig</span>

<i>at 2018-11-05T18:53:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add RING method

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b2b8a49283c6dddfaa31ff7c67205228f7721c50">b2b8a492</a></strong>

<div>

<span>by Christian Holme</span>

<i>at 2018-11-05T18:53:29Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">irgnm: add minimum for alpha as parameter

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/cdfc0701ce0ff7ba66b2388446dab6ceb9220363">cdfc0701</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-05T18:54:16Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">revert to always using periodic for psf

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/94ae49b7265e67c8e30abb9da9ceb327afb1d21d">94ae49b7</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-06T12:16:42Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">output for RING paper

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/56c6740e9f918e367d280e423e3d1636a76d3134">56c6740e</a></strong>

<div>

<span>by Nguyen Damien</span>

<i>at 2018-11-07T11:34:26Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">mmiocc: fix remove function to deallocate memory (#172)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2c8c1a27b25a2d09b4591e7fbb33a78807b18491">2c8c1a27</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-16T15:49:37Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add smallfov test

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c927ba551f13309d1dcb7932464b4a9e67ccd149">c927ba55</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-16T16:19:06Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">allow failures

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/26b35fd62004593310db981870711a4b8b80b0b0">26b35fd6</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-11-19T08:35:00Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add lz when LINKER=icc

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b6ec275dc32d0e11708762710c3d1e01660a87a4">b6ec275d</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-19T14:25:30Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">smallfov test fixes

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/af158b4eaa372b5ae213a110b9463a1f44a6a57b">af158b4e</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-19T14:25:30Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">rewrite projection

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/da609da490bb0d5459c5a65973bbca981289758a">da609da4</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-19T14:25:30Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">introduce option for sms

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/326071d658768e9073b0b961f045381edac2d953">326071d6</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T14:40:24Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Save FFTW wisdom when TOOLBOX path is set.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/106832a87be576e8062b1c8df12bcf8f69df3f21">106832a8</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T14:40:24Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Edit gitignore.main to ignore fftw wisdom

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/7dd3a1a2cea54fc88414cf4dcbb56fdfc0c79cbd">7dd3a1a2</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T15:00:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Initial guess option to wave-shuffling + Modify wshfl forward to output table with centered FFT

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/ce852115148661497883899afe1413b55d6c2599">ce852115</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T15:00:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Edit wave to be similar to wshfl

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/8bccedfc9006b8dc44497eed2a676ff716b31919">8bccedfc</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T15:00:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Edit normalization in wave to be consistent with wshfl

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/4794e34ef418df1abc2f00e11a1b8e7a2dd6a1b1">4794e34e</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T15:00:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Create-operator timings to wshfl

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/a6d1fcb211959254726c5966cd08d1f908b1db79">a6d1fcb2</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T15:00:45Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cosmetic changes to wshfl + Operator timing to wave

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/52e396aabfd7bba2421f5474b4d1d31e8f0eb2b3">52e396aa</a></strong>

<div>

<span>by Siddharth Iyer</span>

<i>at 2018-11-19T15:00:45Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removed the debugging step of saving the sampling mask in wave.

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b58d79a4cc1ac8bcb5488e5381ece7fb8046e6de">b58d79a4</a></strong>

<div>

<span>by Jon Tamir</span>

<i>at 2018-11-19T15:06:18Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add overlapping blocks option for LLR

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/e333120bf49178a5ffd1f64c9a8f97f54eaf7dcf">e333120b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-20T21:21:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">make using clang easier

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/70329a5ace5ebd4944a46a7aa2d4902f8bea7e4c">70329a5a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-20T21:46:17Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add mvec for static linking

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5c57e9cf1c65f3d6ab840204ba9c2b4e35438c81">5c57e9cf</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-20T22:19:26Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix operator_p_(co)domain (thanks to Christian Holme)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/65131eeb4bb6e9a90427f54639049ce5bd9e2ae6">65131eeb</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-20T22:33:15Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">license year

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/57d51b86d7eed1cf458d4ca8af3fa7efc94aeff4">57d51b86</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-21T12:41:58Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add runga-kutta ode solver

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/323811e8112ddfa81d157c4ee5f66b86ee9d4abf">323811e8</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-21T12:45:20Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bloch equations

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/98f0d032cbd1816a2d68f73863ddf6f739b92bd6">98f0d032</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-21T12:45:34Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add ode unit test

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2eb8fa11924a8a10b9aa5614bb3f181cab807e05">2eb8fa11</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-21T12:47:19Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">explanation for bitmasks

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/6130d746ab10e3ce31dd89c087a13c3204b1fd21">6130d746</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-24T11:43:36Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix leaks in unit tests

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/fc7a16cee0567941846b46ff570c69d9e0de8226">fc7a16ce</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-11-24T13:04:59Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add missing frees

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/1d8bf9522a9828fb38db8935e31dfb0734371bb9">1d8bf952</a></strong>

<div>

<span>by soumickOVGU</span>

<i>at 2018-12-01T07:09:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Helper Function for BART with WSL</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f045ad2a9c52f6d4dfcb0af62c9bde92448dfc7d">f045ad2a</a></strong>

<div>

<span>by soumickOVGU</span>

<i>at 2018-12-01T07:09:22Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Helper Function for BART with WSL</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3c39bfe10738142d10452d5576a02f80f8da3b90">3c39bfe1</a></strong>

<div>

<span>by soumickOVGU</span>

<i>at 2018-12-01T07:09:39Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added WSL BART Calls

Can now work with BART inside WSL</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/249d8904b086d1c10c1fae24e4fbaf1f84c81ab2">249d8904</a></strong>

<div>

<span>by soumickOVGU</span>

<i>at 2018-12-01T07:09:55Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added WSL BART Calls

Can now work with BART inside WSL</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/512e7e04c57178ac1e7ff24584bf8d8f5b2565e9">512e7e04</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-02T21:25:46Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix chambolle-pock scaling

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5ef3533ae70cdca120ce1aaaeafc8922012a8dfa">5ef3533a</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-02T21:25:46Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">coding style

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/dcfe39bb2309b4ea05b1098a43b3b1f19a97151c">dcfe39bb</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-05T08:12:34Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">replace zexpj with zexp

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/59a407caefdfa22368e2ac7583fe61f8138f37fc">59a407ca</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-05T08:12:59Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">index command

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/58ff16c814cb1b0c48c8017ffaa944d97331285e">58ff16c8</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-05T08:12:59Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">change warnings for random shifts

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/bbdec08cb45cf0cb77d49f0e35d3310a0b5ca255">bbdec08c</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-05T20:06:14Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nufft unit tests

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/4dc9f95e0a39ea575039d28122065727cfbaed3b">4dc9f95e</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-05T20:13:02Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">relax assertion for non-used dims

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/25242e037fa72ea658f912a899b312a5320776ea">25242e03</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-08T20:09:11Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update nufft

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/3d91bd4bbb0a5c7ff9d06922bf11c56215adc464">3d91bd4b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-08T20:39:17Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nufft basis unit tests

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/8a9b88654ca7f21d0d53a1da879f92ace99cd4bf">8a9b8865</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T09:17:38Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">deactivate cmake integration tests

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/830e1ab94822413277b1a601e4751e6fa453cfe8">830e1ab9</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T09:48:08Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update acknowledgements

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/f6be8893dd8a07b570147ab4629544226d6654fb">f6be8893</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T10:55:17Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update references

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/053eba80ea7d8740a61d71d10069b5701f19376a">053eba80</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T11:06:56Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update pics command (basis)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/69c7f7c532fc87cca42d5d6b853ff93dd2866161">69c7f7c5</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T11:07:49Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add linear constraint tests (t2 shuffling, etc.)

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5527f07385f403d95e83b08ffd0773fa66c95025">5527f073</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T11:08:03Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">test for estshift

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/cf3bef95d406644f5bf29cc9820b4a896eb2ccd9">cf3bef95</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T11:09:39Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update README

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/b301ca87c96388a08cdc501288419405adf4b083">b301ca87</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-09T20:32:46Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump version

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/5ac18f2cb360a8e41c54fabd2f5429dc099628b1">5ac18f2c</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-10T13:19:57Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'v0.4.04'

version 0.4.04

Changes:

        - new tools: index poly wshfl zexp

        - index: generate indices

        - poly: generate polynomial patterns (Siddharth Iyer)

        - wshfl: wave-shuffling (Siddharth Iyer)

        - zexp: replace zexpj with zexp for complex exponentials

        - pics: support for temporal basis

        - pics: overlapping blocks option for LLR (Jon Tamir)

        - pics: make basis pursuit possible for noncartesian data

        - pics: non-negative constraint (Jon Tamir)

        - nlinv: introduce option for sms

        - ecalib: fix bug in phase rotation

        - ecalib: add debug_level argument

        - estdelay: RING method (Sebastian Rosenzweig)

        - traj: Half circle golden-ratio sampling (Sebastian Rosenzweig)

        - traj: Option for asymmetric trajectories (Sebastian Rosenzweig)

        - bench: add option to select benchmarks using bitmask

        - phantom: add geometric object phantom (Sebastian Rosenzweig)

        - phantom: fix inconsistency between img-phantom and k-phantom for rectangles (Sebastian Rosenzweig)

        - copy: enhance copy command to do simple copies

        - toimg: windowing and option to re-scale images to full dynamic range (Jon Tamir)

        - generic: many new integration and unit tests

        - generic: improved WSL support (Soumick Chatterjee)

        - generic: add mkl support (Jon Tamir)

        - generic: bart as a library (Damien Nguyen)

        - generic: CMake improvements (Damien Nguyen)

        - generic: Save FFTW wisdom when TOOLBOX path is set (Siddharth Iyer)

        - generic: fixes for memory leaks

        - library: optimized strided copy on GPU (Simon Yeung)

        - library: parallelization to fftmod

        - library: nufft: efficient use with temporal basis

        - library: nufft: fix issue with over-sized trajectories

        - library: add runga-kutta ode solver

        - library: iter/italgos: alternating minimization (Christian Holme)

        - library: irgnm: add minimum for alpha as parameter (Christian Holme)

        - library: step size support in chambolle-pock

        - library: add tenmul operator

        - library: add md_zexp

        - library: add zexp nonlinear operator

        - library: add linop_null and linop_plus

        - library: add md_zsum: (Complex) sum along specified dimensions (Sebastian Rosenzweig)

        - library: fix bug in septrafo (broke cdf97 wavelets)

        - many other bug fixes and improvements

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/8900be9b59b5c0c0fab585588606f4eb94f7b88f">8900be9b</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-10T13:24:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">makefile change for compatibility with debian

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/c93e7c294df3eed242daff22a8cff88fcf9770ac">c93e7c29</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-10T13:24:32Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove empty directory

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/bart/commit/2d8657e4e45aee6c9fed28447582a3023b4e05d8">2d8657e4</a></strong>

<div>

<span>by Martin Uecker</span>

<i>at 2018-12-10T13:44:21Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">relax unit test

</pre>

</li>

</ul>

<h4>17 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#7a26fa389c6285dcc4a3ce765c03dd81495e05ae">

.gitignore.main

</a>

</li>

<li class="file-stats">

<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">

.travis.yml

</a>

</li>

<li class="file-stats">

<a href="#2cdc7ae734b454aa9217c09256c5559e6d697319">

ACKNOWLEDGEMENTS

</a>

</li>

<li class="file-stats">

<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">

CMakeLists.txt

</a>

</li>

<li class="file-stats">

<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">

LICENSE

</a>

</li>

<li class="file-stats">

<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">

Makefile

</a>

</li>

<li class="file-stats">

<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">

README

</a>

</li>

<li class="file-stats">

<a href="#3344371ac4eeb751e26a08257c39817f7b7e3ce8">

build_targets.mk

</a>

</li>

<li class="file-stats">

<a href="#0c9b1a8a1964ca77c04a209ec7b0679391f5ed7f">

<span class="new-file">

+

cmake/BARTConfig.cmake.in

</span>

</a>

</li>

<li class="file-stats">

<a href="#443c82adc5957f6f658dff48426896242cec0e74">

<span class="new-file">

+

cmake/BARTFindBLASlib.cmake

</span>

</a>

</li>

<li class="file-stats">

<a href="#5135a4fe02a8a697e69c018fff912d47061023d9">

cmake/FindATLAS.cmake

</a>

</li>

<li class="file-stats">

<a href="#333cb741b17ee3c292b913bee415cff210f06d43">

<span class="new-file">

+

cmake/FindBOpenMP.cmake

</span>

</a>

</li>

<li class="file-stats">

<a href="#db8cac5b864a1dacedd2f8fba6b6dc3e7bcb7ef9">

<span class="new-file">

+

cmake/FindBPython.cmake

</span>

</a>

</li>

<li class="file-stats">

<a href="#724a4f0d655a7a161716d88e252a085f173d297c">

<span class="new-file">

+

cmake/FindCUDAlibs.cmake

</span>

</a>

</li>

<li class="file-stats">

<a href="#40f5aad44cb42f0652292108a0db081b04e5fa52">

cmake/FindFFTW.cmake

</a>

</li>

<li class="file-stats">

<a href="#22260e33613ea8035917a78bae1f6124aaf98c64">

cmake/FindLAPACKE.cmake

</a>

</li>

<li class="file-stats">

<a href="#a6382d3965682472d8f409479abf959a3b2611e0">

cmake/FindOpenBLAS.cmake

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

</div>

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<br>

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