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GitLab

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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/beast-mcmc">Debian Med / beast-mcmc</a>

</h3>

<h4>

Commits:

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<li>

<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/6874761531d757947e33ef76367bf6f14f9a0913">68747615</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2018-12-18T13:08:35Z</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.10.4+dfsg</pre>

</li>

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<h4>30 changed files:</h4>

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<li class="file-stats">

<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">

build.xml

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<li class="file-stats">

<a href="#68afb67c663acb3aedabc8e7f8c87f624b34316f">

build_bss.xml

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<li class="file-stats">

<a href="#4abb7c3fd3ef9e870ed70b1015dcd6d75f5a11cf">

build_tempest.xml

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<li class="file-stats">

<a href="#7e30cd195ade384b348e0ce5a6e6d5f8994a2a26">

release/common/README.txt

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<li class="file-stats">

<a href="#ddb01bc519fc9ba9149a55420f5acfde52c1135b">

release/common/VERSION HISTORY.txt

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<li class="file-stats">

<a href="#89730ccbf02c262410775acf9a9ffe5172e30017">

src/dr/app/beagle/tools/Partition.java

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<li class="file-stats">

<a href="#908c8795ef149df37019b6114e408b69d28abaa6">

src/dr/app/beagle/tools/parsers/PartitionParser.java

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<li class="file-stats">

<a href="#e6d39ccb0396118b7bcb8ac431982eaf5b27560e">

src/dr/app/beast/BeastMain.java

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<li class="file-stats">

<a href="#d879949e3bd93468aeb96b11679bae3e03b89c52">

src/dr/app/beast/BeastVersion.java

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<li class="file-stats">

<a href="#75fcf57135e59801452b917a2d948baa9f9e9618">

src/dr/app/beast/development_parsers.properties

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<li class="file-stats">

<a href="#2316230c33f047d719d274b3ea6a0a6051999593">

src/dr/app/beast/release_parsers.properties

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<li class="file-stats">

<a href="#229470d223e99b1547dbaf0fa7f44d0c10b731ac">

src/dr/app/beauti/options/PartitionTreePrior.java

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<li class="file-stats">

<a href="#8c44213d7dc7f14079ab4a87ff52c3229487ece7">

src/dr/app/bss/BeagleSequenceSimulatorApp.java

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<li class="file-stats">

<a href="#d5437c1c00ca0756a2c019947cf711aebb4015db">

src/dr/app/bss/Utils.java

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<li class="file-stats">

<a href="#d37ded4d250a62df9f484146017fd8828c245fa5">

src/dr/app/checkpoint/BeastCheckpointer.java

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<li class="file-stats">

<a href="#9c3b796d21f612103a06908d45b3473aa88c9668">

src/dr/app/checkpoint/checkpointing.md

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<li class="file-stats">

<a href="#9181106e39d6bd5f1b23abdd2b20656cf2d0e532">

src/dr/app/realtime/CheckPointModifier.java

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<li class="file-stats">

<a href="#39f22ff248748ae4295a6d1dbcd5544c090d7016">

src/dr/app/realtime/CheckPointUpdaterApp.java

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<li class="file-stats">

<a href="#8fcd3868ad270a1dd811a950416c7c8af464e2c5">

src/dr/app/tools/LogCombiner.java

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<li class="file-stats">

<a href="#3198458c6c52c10c1ae2bfbfc08be43a726fe5d2">

src/dr/evolution/datatype/HiddenNucleotides.java

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<li class="file-stats">

<a href="#179045907b9af4bdb7226aa776c2656076fae3b6">

src/dr/evomodel/antigenic/CRPClusterRandomWalkOperator.java

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<li class="file-stats">

<a href="#51d5bc36b042b7735ccac093322562a33408b5e5">

src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/ClusterWalkOperator.java

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<li class="file-stats">

<a href="#0252351cc4cb5d4f7f840e70017a3b3248a3e790">

src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/ClusterWalkOperatorParser.java

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<li class="file-stats">

<a href="#372bb1d14dc593f36096e7336c7c616355d2156a">

src/dr/evomodel/antigenic/phyloclustering/misc/obsolete/serumDriftScalingMuOperator.java

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<li class="file-stats">

<a href="#66bc694f3d30260d824db60349b4c1482ceed11c">

src/dr/evomodel/antigenic/phyloclustering/operators/Mu1ScaleActiveScaledMu1IntactOperator.java

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<li class="file-stats">

<a href="#73c1e1324e61d1844401a435b802f578b35297b9">

src/dr/evomodel/antigenic/phyloclustering/operators/Mu2ScaleActiveScaledMu2IntactOperator.java

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</li>

<li class="file-stats">

<a href="#8286a4683c39d901e3b06c4237f6cb91688b62cf">

src/dr/evomodel/antigenic/phyloclustering/operators/ProbGenericSiteGibbsOperator.java

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<li class="file-stats">

<a href="#eb10ec017d60e9f19ab032aaae3f24a61923969a">

src/dr/evomodel/antigenic/phyloclustering/operators/ProbSitesGibbsOperator.java

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</li>

<li class="file-stats">

<a href="#9cbc22cae5f33a08811f8c619d60b9d8278ca7c9">

src/dr/evomodel/antigenic/phyloclustering/operators/RandomWalkOnActiveMu.java

</a>

</li>

<li class="file-stats">

<a href="#96c1f5ebb2cfa66ad9ae3fa6fa47b9e07e3c7f86">

src/dr/evomodel/antigenic/phyloclustering/operators/muMeanTranslateInactiveMu1Operator.java

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<h5>The diff was not included because it is too large.</h5>

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