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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/beast-mcmc">Debian Med / beast-mcmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/d0aeeeb470197ea3189c16a414619c5382e158f3">d0aeeeb4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-10-16T18:54:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.10.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/1ec128dd4e6935eaeed6d65e66f1a343dedd6d57">1ec128dd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T12:59:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not try to install mac and windows build
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/6874761531d757947e33ef76367bf6f14f9a0913">68747615</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T13:08:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.10.4+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/3699b94f6ce9d7d7d2524df32f8131b0dde99120">3699b94f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T13:08:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.10.4+dfsg'
Update to upstream version '1.10.4+dfsg'
with Debian dir eba097574c70a8b072874c6ed3577f17fc157567</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/b620d34d9102de2680a783f14956d7f26be76465">b620d34d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T13:08:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/fbd9d89a8ccfb27291f3574ee61809e687c29514">fbd9d89a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T13:11:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/4d5da9b230276e9ecd9e1408dace2a29961b9f68">4d5da9b2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T13:21:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Tracer is not build in separate build_tracer.xml any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/f226f7470335ca0424fc21fa38f8db7f2312e64d">f226f747</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T13:59:21Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">All *.jars now in build/dist, examples not part of release, no PDF docs any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/dc0b5bdb523a4e0e060cea017c0cfa1b7d3c1c53">dc0b5bdb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T14:02:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream does not ship PDF docs any more thus drop -doc package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/ab3e0e86f6dce18602fdbd07648f353149882e5c">ab3e0e86</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T14:52:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned (Build-)Depends: libhmsbeagle-java (>= 3.1.2~)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/beast-mcmc/commit/0e8c48145b38c678c18a9d1cbd04eb7aa70df039">0e8c4814</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T14:58:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
</a>
</li>
<li class="file-stats">
<a href="#68afb67c663acb3aedabc8e7f8c87f624b34316f">
build_bss.xml
</a>
</li>
<li class="file-stats">
<a href="#4abb7c3fd3ef9e870ed70b1015dcd6d75f5a11cf">
build_tempest.xml
</a>
</li>
<li class="file-stats">
<a href="#1ec80a989ff0ebc44db7b25fe1872bb3f12aa72a">
<span class="deleted-file">
−
debian/beast-mcmc-doc.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d0eb503712154728636392aea6f808dc7d31845">
debian/beast-mcmc-examples.install
</a>
</li>
<li class="file-stats">
<a href="#f20ab11eee8f044d5e1b66f4cadbcfd7c72bd3e1">
debian/beast-mcmc.docs
</a>
</li>
<li class="file-stats">
<a href="#820a92a35f4ea849302df7e842da89ba2d32fcf7">
debian/beast-mcmc.install
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#eccd552bdc25d9feabede291faddc3870f01d41c">
<span class="new-file">
+
debian/patches/ignore_mac_install.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#7e30cd195ade384b348e0ce5a6e6d5f8994a2a26">
release/common/README.txt
</a>
</li>
<li class="file-stats">
<a href="#ddb01bc519fc9ba9149a55420f5acfde52c1135b">
release/common/VERSION HISTORY.txt
</a>
</li>
<li class="file-stats">
<a href="#89730ccbf02c262410775acf9a9ffe5172e30017">
src/dr/app/beagle/tools/Partition.java
</a>
</li>
<li class="file-stats">
<a href="#908c8795ef149df37019b6114e408b69d28abaa6">
src/dr/app/beagle/tools/parsers/PartitionParser.java
</a>
</li>
<li class="file-stats">
<a href="#e6d39ccb0396118b7bcb8ac431982eaf5b27560e">
src/dr/app/beast/BeastMain.java
</a>
</li>
<li class="file-stats">
<a href="#d879949e3bd93468aeb96b11679bae3e03b89c52">
src/dr/app/beast/BeastVersion.java
</a>
</li>
<li class="file-stats">
<a href="#75fcf57135e59801452b917a2d948baa9f9e9618">
src/dr/app/beast/development_parsers.properties
</a>
</li>
<li class="file-stats">
<a href="#2316230c33f047d719d274b3ea6a0a6051999593">
src/dr/app/beast/release_parsers.properties
</a>
</li>
<li class="file-stats">
<a href="#229470d223e99b1547dbaf0fa7f44d0c10b731ac">
src/dr/app/beauti/options/PartitionTreePrior.java
</a>
</li>
<li class="file-stats">
<a href="#8c44213d7dc7f14079ab4a87ff52c3229487ece7">
src/dr/app/bss/BeagleSequenceSimulatorApp.java
</a>
</li>
<li class="file-stats">
<a href="#d5437c1c00ca0756a2c019947cf711aebb4015db">
src/dr/app/bss/Utils.java
</a>
</li>
<li class="file-stats">
<a href="#d37ded4d250a62df9f484146017fd8828c245fa5">
src/dr/app/checkpoint/BeastCheckpointer.java
</a>
</li>
<li class="file-stats">
<a href="#9c3b796d21f612103a06908d45b3473aa88c9668">
src/dr/app/checkpoint/checkpointing.md
</a>
</li>
<li class="file-stats">
<a href="#9181106e39d6bd5f1b23abdd2b20656cf2d0e532">
src/dr/app/realtime/CheckPointModifier.java
</a>
</li>
<li class="file-stats">
<a href="#39f22ff248748ae4295a6d1dbcd5544c090d7016">
src/dr/app/realtime/CheckPointUpdaterApp.java
</a>
</li>
<li class="file-stats">
<a href="#8fcd3868ad270a1dd811a950416c7c8af464e2c5">
src/dr/app/tools/LogCombiner.java
</a>
</li>
<li class="file-stats">
<a href="#3198458c6c52c10c1ae2bfbfc08be43a726fe5d2">
src/dr/evolution/datatype/HiddenNucleotides.java
</a>
</li>
<li class="file-stats">
<a href="#179045907b9af4bdb7226aa776c2656076fae3b6">
src/dr/evomodel/antigenic/CRPClusterRandomWalkOperator.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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