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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libhmsbeagle">Debian Med / libhmsbeagle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/2d02d4016bb602656101bfebf8f07be7b9d9fca5">2d02d401</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:02:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.1.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/0113a67f46988ff9c350136c646333aec0e545dc">0113a67f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:02:50Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.1.2+dfsg'
Update to upstream version '3.1.2+dfsg'
with Debian dir f081c8a543a06836cf0d28ef7193e491009e5a20</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/d7210b8f181d3ff74a4243010b980544b5731f8e">d7210b8f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:02:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/72e40585b5087e86ffe79ff8e187b017d45fc770">72e40585</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:03:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.2.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/3ad8b0023ce31d0e8a517a8043a409a629bf2851">3ad8b002</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:03:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/beee0ba6bcd8ee5cf90371bf3b9115225415e521">beee0ba6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:12:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/19896a8ee4c9eef53d57bd5a8860c2e154e63822">19896a8e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:12:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/2b848088d54ca7e2dd3780509610b24860e9a21d">2b848088</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T09:12:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/9d3be790ba484d482efde928e5608c70a42e8cb2">9d3be790</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T10:28:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Ignore test failures which are most probably not relevant on real hardware but occure in restricted Debian build environment
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/9db376c22fbdda984cf852ec28787b3e6c711b3b">9db376c2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-12-18T10:43:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#be468dedb13dac5b85b4e7b271bcbd23e91d42d3">
app-benchmarks/v3-app-note/Dengue997.nex
→
benchmarks/v3-app-note/Dengue997.nex
</a>
</li>
<li class="file-stats">
<a href="#d3d2944aa2ca02d8260cb6e2a43be8a878009669">
app-benchmarks/v3-app-note/Dengue997_s3_AMVN_BTL.xml
→
benchmarks/v3-app-note/Dengue997_s3_AMVN_BTL.xml
</a>
</li>
<li class="file-stats">
<a href="#cdbc99915d6ff3a0340e25bd852ca16f2346e261">
app-benchmarks/v3-app-note/Dengue997_s3_AMVN_MPDLD.xml
→
benchmarks/v3-app-note/Dengue997_s3_AMVN_MPDLD.xml
</a>
</li>
<li class="file-stats">
<a href="#2bca4e46ee37f371a0deb232e3c26b7f44e0908a">
<span class="new-file">
+
benchmarks/v3-app-note/Dengue997_s3_codon.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#cdb37693e48363860e189fba44ae711c519c8a40">
app-benchmarks/v3-app-note/mcmc-dengue.nex
→
benchmarks/v3-app-note/mcmc-dengue-multi-chain.nex
</a>
</li>
<li class="file-stats">
<a href="#4d35296396fca689227ff20220473de7740487cc">
<span class="new-file">
+
benchmarks/v3-app-note/mcmc-dengue-single-chain.nex
</span>
</a>
</li>
<li class="file-stats">
<a href="#228124163d6184a651409b4d574bff6f681da75c">
<span class="new-file">
+
benchmarks/v3-app-note/run_benchmarks_pll_cipres.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#152b2e1c0babcaa8d36ec4ac1c59459908bce017">
examples/synthetictest/Makefile.am
</a>
</li>
<li class="file-stats">
<a href="#3907b22584680d10ff1d46dd59be9b1e55da1389">
examples/synthetictest/synthetictest.cpp
</a>
</li>
<li class="file-stats">
<a href="#fdc4508250a896e58c2c2a8631c0a40034bc7cfa">
java/beagle/Beagle.java
</a>
</li>
<li class="file-stats">
<a href="#3871e39e89897a02c1402a731894d030aed67285">
<span class="new-file">
+
java/beagle/BeagleBenchmarkFlag.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#35026df59ff88bb816ff021530c08d87fea6a9be">
java/beagle/BeagleFactory.java
</a>
</li>
<li class="file-stats">
<a href="#64368650b9860f5b29465348f8e3a24cb5d7786e">
java/beagle/BeagleInfo.java
</a>
</li>
<li class="file-stats">
<a href="#3d442715c5944362bba55722d8e75b508c56f726">
java/beagle/BeagleJNIImpl.java
</a>
</li>
<li class="file-stats">
<a href="#f602f4e25d8f1c508eee632f3580dced175fc876">
java/beagle/BeagleJNIWrapper.java
</a>
</li>
<li class="file-stats">
<a href="#09021bf4f4c89c269286dc60b42c98ae4047c2ba">
<span class="new-file">
+
java/beagle/BenchmarkedResourceDetails.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#5b770aba394ec1810b9d9a52acdc6d65c59854b1">
java/beagle/GeneralBeagleImpl.java
</a>
</li>
<li class="file-stats">
<a href="#f1c96a4cd8bfa83e74082012dae18af3e8e608d4">
libhmsbeagle/BeagleImpl.h
</a>
</li>
<li class="file-stats">
<a href="#2c0262f2b755c4e3d2f9758c6815bfa15d3c9761">
libhmsbeagle/CPU/BeagleCPU4StateImpl.h
</a>
</li>
<li class="file-stats">
<a href="#b56dbe7117f7b5576f9f9950d25d73ce8a5c3f08">
libhmsbeagle/CPU/BeagleCPU4StateImpl.hpp
</a>
</li>
<li class="file-stats">
<a href="#6667d42aac55f6528c0cfb4227ba8186ac0bc38a">
libhmsbeagle/CPU/BeagleCPUImpl.h
</a>
</li>
<li class="file-stats">
<a href="#8f242e2e9adefbfad7f2404070c9550c2ab20ddd">
libhmsbeagle/CPU/BeagleCPUImpl.hpp
</a>
</li>
<li class="file-stats">
<a href="#7510daee1c0af80b7b9097c8c6bdb6cb609b213a">
libhmsbeagle/CPU/BeagleCPUSSEImpl.hpp
</a>
</li>
<li class="file-stats">
<a href="#821608f5b161bc6bbe69e322b30c6c408821e99a">
libhmsbeagle/CPU/Makefile.am
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777777;">
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