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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/cwltool">Debian Med / cwltool</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/commit/2b3be8896f55284b205ebd05efeeedcd7b5729e8">2b3be889</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-12-23T23:26:11Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add extra deps
add patch for test to use python3
</pre>
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#0a4e986b60a9240ca7d53abf5e2ed246987e8ffc">
<span class="new-file">
+
debian/patches/python3
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/cwltool/commit/2b3be8896f55284b205ebd05efeeedcd7b5729e8#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">cwltool (1.0.20181217162649+dfsg-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">cwltool (1.0.20181217162649+dfsg-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Jelmer Vernooij ]</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Remove unnecessary X-Python{,3}-Version field in debian/control.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,7 @@ cwltool (1.0.20181217162649+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Remove --provenance feature until python3-prov 1.5.2+ issue is</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> resolved.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> <span class="idiff left right">Wed, 03 Oct 2018 04:40:50 -07</span>00</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> <span class="idiff left right">Sun, 23 Dec 2018 15:24:58 -08</span>00</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">cwltool (1.0.20180302231433-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/cwltool/commit/2b3be8896f55284b205ebd05efeeedcd7b5729e8#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,10 +19,13 @@ Build-Depends: debhelper (>= 10),</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> python3-pytest,</span>
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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> python3-pytest-xdist,</span>
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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> python3-pytest-runner,</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> python3-pytest-mock,</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3-mock,</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> python3-mypy,</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> python3-psutil,</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> python3-prov,</span>
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23
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> nodejs,</span>
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24
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> help2man</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"># python3-ruamel.ordereddict,</span>
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26
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Standards-Version: 4.2.1</span>
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27
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/cwltool</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/cwltool.git</span>
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<li id="0a4e986b60a9240ca7d53abf5e2ed246987e8ffc">
<a href="https://salsa.debian.org/med-team/cwltool/commit/2b3be8896f55284b205ebd05efeeedcd7b5729e8#0a4e986b60a9240ca7d53abf5e2ed246987e8ffc"><strong>debian/patches/python3</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Michael R. Crusoe <michael.crusoe@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Description: Use python3 in test CWL tool description</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- cwltool.orig/tests/wf/echo.cwl</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ cwltool/tests/wf/echo.cwl</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -22,4 +22,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> type: File</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> outputBinding:</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> glob: foo$(inputs.r).txt</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-arguments: [python, -c, $(inputs.script), $(inputs.r)]</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+arguments: [python3, -c, $(inputs.script), $(inputs.r)]</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- cwltool.orig/tests/wf/js_output.cwl</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ cwltool/tests/wf/js_output.cwl</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -6,5 +6,5 @@</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> inputs: []</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> outputs: []</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> arguments:</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- - valueFrom: ${console.log("Log message");console.error("Error message");return ["python", "-c", "True"]}</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- shellQuote: false</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff">\ No newline at end of file</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ - valueFrom: ${console.log("Log message");console.error("Error message");return ["python3", "-c", "True"]}</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ shellQuote: false</span></span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/cwltool/commit/2b3be8896f55284b205ebd05efeeedcd7b5729e8#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,3 +7,4 @@ disable_prov</td>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">exclude_jshint</span>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">spelling</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">cleanup-tests</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">python3</span></pre>
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