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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/1afe8e70e6b149bcb03ba29451612c79e59c137a">1afe8e70</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-12-31T23:24:07Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">install BubbleUpClustering binary
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/d0f017bec9bbeb7928c1d052b1d030b4f3294a88">d0f017be</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2018-12-31T23:35:42Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>4 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
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+
debian/clean
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#1c59a5b1423455bbaaab2ab4c6345c91350b4d44">
debian/trinityrnaseq.install
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/trinityrnaseq/compare/74d0660b28a0dce1992159b09b28f46c064605a1...d0f017bec9bbeb7928c1d052b1d030b4f3294a88#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">trinityrnaseq (2.6.6+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * debian/trinityrnaseq.install: Add BubbleUpClustering binary</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 31 Dec 2018 15:30:16 -0800</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">trinityrnaseq (2.6.6+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Team upload.</span>
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</li>
<li id="f5f51601866c86e59a004bd93fa415f5675be8c5">
<a href="https://salsa.debian.org/med-team/trinityrnaseq/compare/74d0660b28a0dce1992159b09b28f46c064605a1...d0f017bec9bbeb7928c1d052b1d030b4f3294a88#f5f51601866c86e59a004bd93fa415f5675be8c5"><strong>debian/clean</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Butterfly/src/sample_data/c1.graph.allProbPaths.fasta</span></pre>
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</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/trinityrnaseq/compare/74d0660b28a0dce1992159b09b28f46c064605a1...d0f017bec9bbeb7928c1d052b1d030b4f3294a88#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,7 +17,7 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> jellyfish,</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> salmon,</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3.0</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/trinityrnaseq</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/trinityrnaseq.git</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Homepage: http://trinityrnaseq.github.io/</span>
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<li id="1c59a5b1423455bbaaab2ab4c6345c91350b4d44">
<a href="https://salsa.debian.org/med-team/trinityrnaseq/compare/74d0660b28a0dce1992159b09b28f46c064605a1...d0f017bec9bbeb7928c1d052b1d030b4f3294a88#1c59a5b1423455bbaaab2ab4c6345c91350b4d44"><strong>debian/trinityrnaseq.install</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,7 @@ Analysis /usr/lib/trinityrnaseq/</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="php"><span class="nx">trinity</span><span class="o" style="font-weight: 600;">-</span><span class="nx">plugins</span><span class="o" style="font-weight: 600;">/</span><span class="nx">slclust</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">slclust</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinityrnaseq</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinity</span><span class="o" style="font-weight: 600;">-</span><span class="nx">plugins</span><span class="o" style="font-weight: 600;">/</span><span class="nx">slclust</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="php"><span class="nx">trinity</span><span class="o" style="font-weight: 600;">-</span><span class="nx">plugins</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scaffold_iworm_contigs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scaffold_iworm_contigs</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinityrnaseq</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinity</span><span class="o" style="font-weight: 600;">-</span><span class="nx">plugins</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scaffold_iworm_contigs</span><span class="o" style="font-weight: 600;">/</span></span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="php"><span class="nx">trinity</span><span class="o" style="font-weight: 600;">-</span><span class="nx">plugins</span><span class="o" style="font-weight: 600;">/</span><span class="nx">seqtk</span><span class="o" style="font-weight: 600;">-</span><span class="nx">trinity</span><span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">0.0</span><span class="o" style="font-weight: 600;">.</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">/</span><span class="nx">seqtk</span><span class="o" style="font-weight: 600;">-</span><span class="nx">trinity</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinityrnaseq</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinity</span><span class="o" style="font-weight: 600;">-</span><span class="nx">plugins</span><span class="o" style="font-weight: 600;">/</span><span class="nx">BIN</span><span class="o" style="font-weight: 600;">/</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span><span class="nx">BubbleUpClustering</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinityrnaseq</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="php"><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span><span class="nx">TranscriptomeFromVaryK</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinityrnaseq</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="php"><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span><span class="nx">RunButterfly</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinityrnaseq</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span></span>
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8
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="php"><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span><span class="nx">ReadsToTranscripts_MPI_chang</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">trinityrnaseq</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Chrysalis</span><span class="o" style="font-weight: 600;">/</span></span>
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