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<h3>
Dylan Aïssi pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/e0d2b4e465b70f92857ca388ae4bdddcfb1e2820">e0d2b4e4</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-01-03T07:12:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.4.0</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
</a>
</li>
<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
</a>
</li>
<li class="file-stats">
<a href="#3c7246c0b371cfd3a475428be04706178ca01f0f">
docs/project_info/faq.rst
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</li>
<li class="file-stats">
<a href="#02739d845044a6cd860043a088ae0a786829cd56">
docs/snakefiles/modularization.rst
</a>
</li>
<li class="file-stats">
<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
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</li>
<li class="file-stats">
<a href="#6e44c81569e59fa3a94e1cf4a660f38c9fe5ca24">
docs/tutorial/additional_features.rst
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</li>
<li class="file-stats">
<a href="#7f695df9a93bb6d2f47c562fd1282181e830528b">
docs/tutorial/basics.rst
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</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
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<li class="file-stats">
<a href="#a3f7d8116d97086f34b95ab949c6c99128c6713f">
snakemake/benchmark.py
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<li class="file-stats">
<a href="#79c2ae1b959ead58197523e6ba45d7c029cb1ef0">
<span class="new-file">
+
snakemake/checkpoints.py
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<li class="file-stats">
<a href="#df4be91675a0ec494b4883d845ec77d630aa9b66">
snakemake/common.py
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</li>
<li class="file-stats">
<a href="#cc2e928f15e341aa118531053338930d0d215b9d">
snakemake/conda.py
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</li>
<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
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</li>
<li class="file-stats">
<a href="#f26ea241de6ff4cfc0be3675c4f2da7114bd889d">
snakemake/exceptions.py
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</li>
<li class="file-stats">
<a href="#1dba76c2cca537b789f8754f5ddbed5dc36c6dee">
snakemake/executors.py
</a>
</li>
<li class="file-stats">
<a href="#e933119c7503fe1d48ce0b0d37492388705f5808">
snakemake/io.py
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<li class="file-stats">
<a href="#818384818c4671b8354b6eb98ee2bab61c015a74">
snakemake/jobs.py
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</li>
<li class="file-stats">
<a href="#6c195c1be80e4ad60b55a5a06c27411c43bbc217">
snakemake/logging.py
</a>
</li>
<li class="file-stats">
<a href="#d70c11793454d64a7b2d77ced116226d2f13378e">
snakemake/parser.py
</a>
</li>
<li class="file-stats">
<a href="#37945b951dec897845c94629dba3140528dcf147">
snakemake/persistence.py
</a>
</li>
<li class="file-stats">
<a href="#f5f6dbc532c5a267b662cdf6695a36db054a325e">
snakemake/remote/SFTP.py
</a>
</li>
<li class="file-stats">
<a href="#3065d4749c6410564a20007bd7748abfda7699f6">
snakemake/report/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#55752111e76e9d786fdb84c4e7fd9f6de5c67a24">
snakemake/rules.py
</a>
</li>
<li class="file-stats">
<a href="#0ac0ac393192e0b6a8ebf767dd5e206b4afbf3b2">
snakemake/scheduler.py
</a>
</li>
<li class="file-stats">
<a href="#66a73d9dd46eb8e71f0039a18d36dbd78aea7977">
snakemake/script.py
</a>
</li>
<li class="file-stats">
<a href="#890eb9a72c661585e32094a5a93e483c1b1a8c82">
snakemake/shell.py
</a>
</li>
<li class="file-stats">
<a href="#f00d39cf87461717d695c7d7a12876173105fc19">
snakemake/singularity.py
</a>
</li>
<li class="file-stats">
<a href="#9ca669a3173c07a202d199fb807e42d26441228e">
snakemake/utils.py
</a>
</li>
<li class="file-stats">
<a href="#cb9e107597e441fb1c0d61663359d9cf1dbfe04d">
snakemake/workflow.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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