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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/commit/46d02fb72358d33f4a73f83ba4b22d46ec8ecb04">46d02fb7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-07T10:54:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.18.0</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#083a75879f75eab7b4cd4116aad6215c5988ac76">
attic/toil-sort-example.py
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<li class="file-stats">
<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">
docs/appendices/environment_vars.rst
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<a href="#abd8589b4d5ee2ea66ee95d8caf4e8759ffb9ce0">
docs/contributing/contributing.rst
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<a href="#5e25feb6b25012c00d6a27af4470f92ec5ccb67b">
docs/developingWorkflows/developing.rst
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<a href="#9b7b19eaf87ceb524470a920a457425b602cd816">
docs/developingWorkflows/toilAPIBatchsystem.rst
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<a href="#cb9729d9831b9bd58e9bb638cc0c36e12ae1d1c1">
docs/developingWorkflows/toilAPIFilestore.rst
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<a href="#9c7786e2c4730fab23a42468d049ec242c297b8c">
docs/gettingStarted/install.rst
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<a href="#f6fd38662d0696a7f4554040b8fec01f4f63546b">
docs/gettingStarted/quickStart.rst
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<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
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<li class="file-stats">
<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">
docs/running/cloud/amazon.rst
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<a href="#040bb5962a87ee2772d8d1741c810c1727cf0bcc">
docs/running/cloud/azure.rst
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<a href="#9d336859ebc50ce12f946e32de94343f00be9ebb">
docs/running/cloud/clusterUtils.rst
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<a href="#2a53c4a04324247c2fb07f240c51435da9975175">
docs/running/cloud/gce.rst
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<a href="#54aa56c0c0e2cd49ea7a6083879baecb55a418b1">
docs/running/cwl.rst
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<li class="file-stats">
<a href="#23df65cbc06731222c916cd45cb6b24f00c5460e">
docs/running/hpcEnvironments.rst
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<li class="file-stats">
<a href="#dac3c500fb7199030518b77e687a47a830e4074d">
docs/running/introduction.rst
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<a href="#3ddb5d0ba5a4dbf1da596fd4e9b7eafb950d778d">
docs/running/wdl.rst
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<li class="file-stats">
<a href="#8c91c0296909b5ea3c496fde69e9dc44a6c6ae5f">
setup.cfg
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#42e82db8dfc40fc9f2df468cc92584cb0441719f">
src/toil/__init__.py
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<li class="file-stats">
<a href="#e80ba9107fbe8c247c4a06d919de60d903b13b57">
src/toil/batchSystems/abstractGridEngineBatchSystem.py
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<li class="file-stats">
<a href="#8665892a623b484a6317e6aef58200c3f489951b">
src/toil/batchSystems/gridengine.py
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<li class="file-stats">
<a href="#8354e49ab5525eaccab005722337809789a2b4c8">
src/toil/batchSystems/htcondor.py
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<li class="file-stats">
<a href="#184892bb0e21972b1bc724ffc0b62a4c3616a44c">
src/toil/batchSystems/lsf.py
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<a href="#da04225838d2734baa1efa5147660ca1e6d2df14">
src/toil/batchSystems/lsfHelper.py
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<li class="file-stats">
<a href="#51c103b23323037f067bfea96a5cd293cbd8bfab">
src/toil/batchSystems/mesos/batchSystem.py
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<li class="file-stats">
<a href="#99c24d1b30534d665746feee900c46f6e8459b39">
src/toil/batchSystems/options.py
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<h5>The diff was not included because it is too large.</h5>
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