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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/proteinortho">Debian Med / proteinortho</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/proteinortho/commit/6062c9029b4e10b8aba7d26672cb03ab11f5e40e">6062c902</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-08T08:20:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.16b+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/proteinortho/commit/a0ec3e070fc4b2b1df5954f67d9b64f3069f42cb">a0ec3e07</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-08T08:29:44Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.16.b+dfsg</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#c3a57e7afe0f1aa9a980dfc188aa873d3c006ce0">
proteinortho5.pl
</a>
</li>
<li class="file-stats">
<a href="#d7b44f60b1891297da292f87114cb80f89d8526f">
proteinortho5_clustering.cpp
</a>
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</ul>
<h4>Changes:</h4>
<li id="836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
<a href="https://salsa.debian.org/med-team/proteinortho/compare/6ecf7dce0bb2fb4706bc16e7989b138f814daab2...a0ec3e070fc4b2b1df5954f67d9b64f3069f42cb#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c"><strong>Makefile</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,4 +19,5 @@ test: proteinortho5.pl proteinortho5_clustering</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="make"> ./proteinortho5.pl <span class="nt" style="color: navy;">-project</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">test</span> <span class="nt" style="color: navy;">-synteny</span> <span class="nt" style="color: navy;">-singles</span> <span class="nb" style="color: #0086b3;">test</span>/<span class="k" style="font-weight: 600;">*</span>.faa</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="make"> <span class="p">@</span>./chk_test.pl test.proteinortho</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="make"> <span class="p">@</span>./chk_test.pl test.poff</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm </span>test.<span class="k" style="font-weight: 600;">*</span></span>
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"> <span class="p">@</span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Test okay"</span></span></pre>
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<li id="c3a57e7afe0f1aa9a980dfc188aa873d3c006ce0">
<a href="https://salsa.debian.org/med-team/proteinortho/compare/6ecf7dce0bb2fb4706bc16e7989b138f814daab2...a0ec3e070fc4b2b1df5954f67d9b64f3069f42cb#c3a57e7afe0f1aa9a980dfc188aa873d3c006ce0"><strong>proteinortho5.pl</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -47,7 +47,7 @@ use Thread::Queue;</td>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">##########################################################################################</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;"># Variables</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">##########################################################################################</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="perl"><span class="k" style="font-weight: 600;">our</span> <span class="nv" style="color: teal;">$version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"5.16"</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="perl"><span class="k" style="font-weight: 600;">our</span> <span class="nv" style="color: teal;">$version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"5.16<span class="idiff left right">b</span>"</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="perl"><span class="k" style="font-weight: 600;">our</span> <span class="nv" style="color: teal;">$step</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="c1" style="color: #998; font-style: italic;"># 0/1/2/3 -> do all / only apply step 1 / only apply step 2 / only apply step 3</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="perl"><span class="k" style="font-weight: 600;">our</span> <span class="nv" style="color: teal;">$verbose</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="c1" style="color: #998; font-style: italic;"># 0/1 -> don't / be verbose</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="perl"><span class="k" style="font-weight: 600;">our</span> <span class="nv" style="color: teal;">$debug</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="c1" style="color: #998; font-style: italic;"># 0/1 -> don't / show debug data</span></span>
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<li id="d7b44f60b1891297da292f87114cb80f89d8526f">
<a href="https://salsa.debian.org/med-team/proteinortho/compare/6ecf7dce0bb2fb4706bc16e7989b138f814daab2...a0ec3e070fc4b2b1df5954f67d9b64f3069f42cb#d7b44f60b1891297da292f87114cb80f89d8526f"><strong>proteinortho5_clustering.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Reads edge list and splits connected components</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * according to algebraic connectivity threshold</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Last updated: 2017/0<span class="idiff left right">3</span>/20 </span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Last updated: 2017/0<span class="idiff left right">9</span>/20 </span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * Author: Marcus Lechner</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -307,7 +307,7 @@ void partition_graph() {</td>
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307
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307
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="cpp"></span>
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308
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308
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Connectivity analysis</span></span>
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309
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309
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">debug_level</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[DEBUG] Calculating connectivity of a group. "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">current_group</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" proteins (ID: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">protein_id</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">")"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">current_group</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">16000</span><span class="p">)</span> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[WARN] Current connected component con<span class="idiff left right">at</span>ins "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">current_group</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" proteins. That might be way to much for me. Try raising the e-value!"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">current_group</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">16000</span><span class="p">)</span> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[WARN] Current connected component con<span class="idiff left right">ta</span>ins "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">current_group</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" proteins. That might be way to much for me. Try raising the e-value!"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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311
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">connectivity</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getConnectivity</span><span class="p">(</span><span class="n" style="color: #333;">current_group</span><span class="p">);</span></span>
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312
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">debug_level</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[DEBUG] Connectivity was "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">connectivity</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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313
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313
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -535,8 +535,8 @@ void splitGroups(vector<double>& y, vector<unsigned int>& nodes){</td>
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535
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535
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<pre style="margin: 0;"> <span id="LC535" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// cerr << groupA.size() << " -- " << groupB.size() << endl;</span></span>
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536
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536
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<pre style="margin: 0;"> <span id="LC536" class="line" lang="cpp"></span>
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537
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537
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<pre style="margin: 0;"> <span id="LC537" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Catch error in laplacien calcs</span></span>
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538
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">groupA</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">size</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">groupB</span></span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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539
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="s" style="color: #d14;"><span class="idiff left right">"Failed to partition subgraph! This might lead to an infinit loop. Please submit the .blastgraph file to lechner@staff.uni-marburg.de to help fixing this issue."</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(<span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff">groupA</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">size</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">groupB</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">size</span></span><span class="p"><span class="idiff">()</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">groupZero</span></span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="p">{</span></span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;"><span class="idiff left">string</span></span><span class="p"><span class="idiff">(</span></span><span class="s" style="color: #d14;"><span class="idiff">"Failed to partition subgraph! This might lead to an infinit loop. Please submit the .blastgraph file to lechner@staff.uni-marburg.de to help fixing this issue."</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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540
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540
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<pre style="margin: 0;"> <span id="LC540" class="line" lang="cpp"> <span class="p">}</span></span>
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541
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541
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<pre style="margin: 0;"> <span id="LC541" class="line" lang="cpp"></span>
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542
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542
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<pre style="margin: 0;"> <span id="LC542" class="line" lang="cpp"> <span class="n" style="color: #333;">removeExternalEdges</span><span class="p">(</span><span class="n" style="color: #333;">groupZero</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -621,7 +621,7 @@ void remove_edge(protein& node, const unsigned int remove_id) {</td>
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621
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621
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<pre style="margin: 0;"> <span id="LC621" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Search for element in edge list</span></span>
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622
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622
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<pre style="margin: 0;"> <span id="LC622" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">iterator</span> <span class="n" style="color: #333;">element</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">find</span><span class="p">(</span><span class="n" style="color: #333;">node</span><span class="p">.</span><span class="n" style="color: #333;">edges</span><span class="p">.</span><span class="n" style="color: #333;">begin</span><span class="p">(),</span> <span class="n" style="color: #333;">node</span><span class="p">.</span><span class="n" style="color: #333;">edges</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">(),</span> <span class="n" style="color: #333;">remove_id</span><span class="p">);</span></span>
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623
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623
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<pre style="margin: 0;"> <span id="LC623" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// Not found (something is wrong!)</span></span>
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624
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<pre style="margin: 0;">-<span id="LC624" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">element</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">node</span><span class="p">.</span><span class="n" style="color: #333;">edges</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">())</span> <span class="k" style="font-weight: 600;">throw</span> <span class="s" style="color: #d14;"><span class="idiff left right">"Element could not be found in edge list"</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">element</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">node</span><span class="p">.</span><span class="n" style="color: #333;">edges</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">())</span> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;"><span class="idiff left">string</span></span><span class="p"><span class="idiff">(</span></span><span class="s" style="color: #d14;"><span class="idiff">"Element could not be found in edge list"</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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<pre style="margin: 0;"> <span id="LC625" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// // Remove element</span></span>
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<pre style="margin: 0;"> <span id="LC626" class="line" lang="cpp"> <span class="n" style="color: #333;">node</span><span class="p">.</span><span class="n" style="color: #333;">edges</span><span class="p">.</span><span class="n" style="color: #333;">erase</span><span class="p">(</span><span class="n" style="color: #333;">element</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC627" class="line" lang="cpp"><span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -706,7 +706,7 @@ void parse_file(string file) {</td>
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<pre style="margin: 0;"> <span id="LC706" class="line" lang="cpp"> <span class="p">}</span></span>
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707
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<pre style="margin: 0;"> <span id="LC707" class="line" lang="cpp"> <span class="p">}</span></span>
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708
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708
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<pre style="margin: 0;"> <span id="LC708" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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709
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<pre style="margin: 0;">-<span id="LC709" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="s" style="color: #d14;"><span class="idiff left right">"Could not open file "</span></span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">file</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC709" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;"><span class="idiff left">string</span></span><span class="p"><span class="idiff">(</span></span><span class="s" style="color: #d14;"><span class="idiff">"Could not open file "</span></span><span class="p"><span class="idiff right">)</span></span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">file</span><span class="p">;</span></span>
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710
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710
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<pre style="margin: 0;"> <span id="LC710" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old_line" data-linenumber="711" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
711
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<td class="diff-line-num new_line" data-linenumber="711" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
711
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC711" class="line" lang="cpp"><span class="p">}</span></span>
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<td class="diff-line-num old_line" data-linenumber="712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
712
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<td class="diff-line-num new_line" data-linenumber="712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
712
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<pre style="margin: 0;"> <span id="LC712" class="line" lang="cpp"></span>
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