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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/biojava4-live">Debian Med / biojava4-live</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/3aba982fef68dce7e73b2a29b7f07fee88bfcb0c">3aba982f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T09:49:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.2.12</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/2cc678405dd024fe0e493fb9b2d0522d877648c5">2cc67840</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T09:51:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.2.12'
Update to upstream version '4.2.12'
with Debian dir 72d04d415bc21c5c84b18b10060905cf973f6ee7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/445fa5e69c01c59e23171e8d8ca5b47460bf0e9e">445fa5e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T09:51:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/b1e5bc142f89a5918455b2b401d8d57b5c1f3195">b1e5bc14</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T09:51:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/edb331d66c93d5d876d3ede96296ff632dd0d9d4">edb331d6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T09:57:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/c43d289e8609440d83ec1554c28a1c887930b1c4">c43d289e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T09:57:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.3.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/dcd9218e730816dee20e7d685f68d2b8da9b80da">dcd9218e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T10:33:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Its not the original source we are dealing with
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/8d48abfeaece53f6aa10519dcddb356fd0240205">8d48abfe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T10:33:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.2.12+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/4f42c1e9908d1e45eb10fc336a3ce9f87c86fa62">4f42c1e9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T10:34:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.2.12+dfsg'
Update to upstream version '4.2.12+dfsg'
with Debian dir cbd6faf925fd6b139d6a49e801064c269e3411ec</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/biojava4-live/commit/d49a860cf07cc226853b42671dfaba062094b410">d49a860c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T10:44:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Need to solve build error with help of Java team
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#eae1f8e4eee985cec491eebc50e5e27bb9b2c170">
biojava-aa-prop/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#c521072b30695c9a39edd508f8132e5d36df975c">
biojava-alignment/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#ef3263aa6a88d390f7b05598798eaa574644200f">
biojava-core/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#c8eb86ae672dda5c63d549d5d561b24bac8603b6">
biojava-core/src/main/java/org/biojava/nbio/core/sequence/loader/UniprotProxySequenceReader.java
</a>
</li>
<li class="file-stats">
<a href="#ec64509af8ef0c0b83ce584250c53a9e179a35d7">
biojava-genome/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#184b5673dd964353dc02ee87944303b467d3d155">
biojava-integrationtest/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#dc21809df6dca39aab598512feab461669a06121">
biojava-modfinder/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#fbe68b243f2c27bad79188712b2f1cef1b94a53b">
biojava-ontology/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#20dfbfc7ba8f72600e13d2ecd32c9eae858f1b56">
biojava-phylo/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#b50cb5175e0cabb113c6322d1bba1d5e14f82029">
biojava-protein-disorder/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#7d8914fa09bceaff9477f6ec0ba8f629228de925">
biojava-sequencing/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#97d9023e3b6aa8ede87066949adb144e3921bd59">
biojava-structure-gui/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#bc75ba48356609052210fbf9f8f39f1d265b6c6e">
biojava-structure/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#eaa9e59d5ea8eb17c7253f6af6e97b922791c6cb">
biojava-structure/src/main/java/org/biojava/nbio/structure/StructureIO.java
</a>
</li>
<li class="file-stats">
<a href="#3acb1c5c4dfcadec7cbaaf6c563ea7c1318e0947">
biojava-structure/src/main/java/org/biojava/nbio/structure/cath/CathInstallation.java
</a>
</li>
<li class="file-stats">
<a href="#fc5afcafbad3aa57eae2562032c7f9f7c8df9eb3">
biojava-structure/src/main/java/org/biojava/nbio/structure/io/LocalPDBDirectory.java
</a>
</li>
<li class="file-stats">
<a href="#b718810c810230284c03cc47a47893ff188ffec6">
biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/ChemCompGroupFactory.java
</a>
</li>
<li class="file-stats">
<a href="#c9544f544200a902cd1467f05515b3586169d9f4">
biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/DownloadChemCompProvider.java
</a>
</li>
<li class="file-stats">
<a href="#cd1a85bfbcb2f8b5bfe993e88e9fdf07b5d1556f">
biojava-structure/src/main/java/org/biojava/nbio/structure/io/mmcif/SimpleMMcifParser.java
</a>
</li>
<li class="file-stats">
<a href="#fe1edc857045a7d0455eeeb9e81b445b8fce3865">
biojava-structure/src/main/java/org/biojava/nbio/structure/io/util/FileDownloadUtils.java
</a>
</li>
<li class="file-stats">
<a href="#7fb985a3aeb9a4f46da35200e130b1ef891eb9be">
biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/CeSymmResult.java
</a>
</li>
<li class="file-stats">
<a href="#efb614d21e140fe6ec68bf881794ca2b0b175e60">
biojava-structure/src/test/java/org/biojava/nbio/structure/TestAtomCache.java
</a>
</li>
<li class="file-stats">
<a href="#92a752fb8611c5f680cbf31058ac2f489a7cc933">
biojava-structure/src/test/java/org/biojava/nbio/structure/TestExperimentalTechniques.java
</a>
</li>
<li class="file-stats">
<a href="#75ee9ec412f2376a5ff1cd5c2e8f58aeadee5e26">
biojava-structure/src/test/java/org/biojava/nbio/structure/align/util/AtomCacheTest.java
</a>
</li>
<li class="file-stats">
<a href="#c6e47bfa4a58cf7a8969a3bfc01aedad17cbc04a">
<span class="new-file">
+
biojava-structure/src/test/java/org/biojava/nbio/structure/test/util/GlobalsHelper.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5518cde38547e1422e67390dd0063b16c3e160b">
<span class="new-file">
+
biojava-structure/src/test/resources/atp.cif.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#211138d0d9f7559842c8e636097db1e40f225ff4">
biojava-survival/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#d776f6089be530cdb58291bc061f164083e9f1ae">
biojava-ws/pom.xml
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777777;">
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