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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/gbwt">Debian Med / gbwt</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gbwt/commit/aeea34521a3d48b5ae7140b5898ddb2c63cc2a18">aeea3452</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-12-14T07:37:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">skip tests for now
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gbwt/commit/51f3fca443b254103b4bab049a10d04d19163f05">51f3fca4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-12-14T07:40:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">install the static library
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gbwt/commit/7a13f09417ec471ab92ade8bd5b714cfa3efeaec">7a13f094</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-10T15:44:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">set -DNDEBUG as per upstream
https://github.com/jltsiren/gbwt/issues/2#issuecomment-447283489
</pre>
</li>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/gbwt/compare/25d7af4b0ba43273e22ae5a49efaaf728065b2f1...7a13f09417ec471ab92ade8bd5b714cfa3efeaec#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +12,7 @@ Homepage: https://github.com/jltsiren/gbwt</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Package: libgbwt-dev</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Depends: ${<span class="idiff left right">shlibs:Depends}, ${</span>misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Description: Substring index for paths in a graph</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> Graph BWT is an independent implementation of the graph extension (gPBWT) of </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> the positional Burrows-Wheeler transform (PBWT). Its initial purpose is to</span>
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<br>
</li>
<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/gbwt/compare/25d7af4b0ba43273e22ae5a49efaaf728065b2f1...7a13f09417ec471ab92ade8bd5b714cfa3efeaec#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,15 +15,21 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"># specified by <https://reproducible-builds.org/specs/source-date-epoch/></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"># for hardening you might like to uncomment this:</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"># export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) -DNDEBUG</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> dh_auto_build -- MY_CXX=g++ INC_DIR=/usr/include LIB_DIR=/usr/lib</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> dh_auto_build -- CXXFLAGS="$(CXXFLAGS)" MY_CXX=g++ INC_DIR=/usr/include LIB_DIR=/usr/lib</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">override_dh_auto_install:</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> dh_auto_install</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> mkdir -p debian/libgbwt-dev/usr/lib/$(shell dpkg-architecture --query DEB_HOST_MULTIARCH)/</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> cp libgbwt.a debian/libgbwt-dev/usr/lib/$(shell dpkg-architecture --query DEB_HOST_MULTIARCH)/</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> dh_auto_test -- MY_CXX=g++ INC_DIR=/usr/include LIB_DIR=/usr/lib</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> dh_auto_test -- <span class="idiff left right">CXXFLAGS="$(CXXFLAGS)" </span>MY_CXX=g++ INC_DIR=/usr/include LIB_DIR=/usr/lib</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">endif</span></pre>
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<a href="https://salsa.debian.org/med-team/gbwt/compare/25d7af4b0ba43273e22ae5a49efaaf728065b2f1...7a13f09417ec471ab92ade8bd5b714cfa3efeaec#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Depends: @</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">#</span>Tests: run-unit-test</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"><span class="idiff left right">#</span>Depends: @</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">#</span>Restrictions: allow-stderr</span></pre>
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