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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/2d8023c38e442005719ef005b4a3d47b51154968">2d8023c3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:51:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.18.23+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/9bb0c423c2a2657f7a80e832417c4341f1d54677">9bb0c423</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:52:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.18.23+dfsg'
Update to upstream version '2.18.23+dfsg'
with Debian dir 218ff8637311139efd72d5fa3f9d0e2d9b27a551</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/e5ffe69744d53adcfc63371badfa88ce8f9fc6da">e5ffe697</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:52:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/e402cfd01b158712b4d7145df8bda7cd5d573534">e402cfd0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:52:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/fcb37a1022688e8223336003b4a73c2e00ef0a25">fcb37a10</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:52:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.3.0
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#89581ac0b61dde434443cdf65afd6f4e5f19399d">
src/main/java/picard/analysis/directed/RnaSeqMetricsCollector.java
</a>
</li>
<li class="file-stats">
<a href="#6a02930b07b9a5d4b76685f51390584d3d138f67">
src/main/java/picard/illumina/IlluminaBasecallsToFastq.java
</a>
</li>
<li class="file-stats">
<a href="#4e3534a75dfd4f65811dba40ad728ca9e29c2844">
src/main/java/picard/illumina/IlluminaBasecallsToSam.java
</a>
</li>
<li class="file-stats">
<a href="#776518b1ba71a408ae21f8028798a4177a07da9a">
src/main/java/picard/illumina/NewIlluminaBasecallsConverter.java
</a>
</li>
<li class="file-stats">
<a href="#c3739150012b3ae914edffdb52e1e5d9f670f249">
src/main/java/picard/illumina/parser/BaseIlluminaDataProvider.java
</a>
</li>
<li class="file-stats">
<a href="#d6bb75c9024cc453664c0b86f81e99351b1b0cfe">
src/main/java/picard/illumina/parser/CbclData.java
</a>
</li>
<li class="file-stats">
<a href="#42ffd9ee8bcca3205d789b07350058144442f1ff">
src/main/java/picard/illumina/parser/FilterParser.java
</a>
</li>
<li class="file-stats">
<a href="#3d226ee21322a8c38428ca7889d26099c1bac15d">
src/main/java/picard/illumina/parser/IlluminaData.java
</a>
</li>
<li class="file-stats">
<a href="#f55c3e150599eac421c9c0da2d34e9add32b8f31">
src/main/java/picard/illumina/parser/MultiTileFilterParser.java
</a>
</li>
<li class="file-stats">
<a href="#db3e4fed95085a2dc452476c200f06c594ffe019">
src/main/java/picard/illumina/parser/readers/CbclReader.java
</a>
</li>
<li class="file-stats">
<a href="#2251ea850ba98345bce132efaf72cb3836941ddb">
src/main/java/picard/sam/markduplicates/UmiUtil.java
</a>
</li>
<li class="file-stats">
<a href="#dc629c42db1f7d3a87978e3c165dbd25e8d1cd12">
src/main/java/picard/sam/markduplicates/util/OpticalDuplicateFinder.java
</a>
</li>
<li class="file-stats">
<a href="#7b8c8bdd576e9d3a0df135db87180469ffbaea30">
src/main/java/picard/sam/util/ReadNameParser.java
</a>
</li>
<li class="file-stats">
<a href="#813710362f32b1c12d752ba7601a00d9dcbdbd1d">
src/main/java/picard/util/ThreadPoolExecutorWithExceptions.java
</a>
</li>
<li class="file-stats">
<a href="#12247ce6b4d138b1a549e9a057275fa85001fab8">
src/test/java/picard/analysis/CollectRnaSeqMetricsTest.java
</a>
</li>
<li class="file-stats">
<a href="#4a3455d3b3da89fba102450e92ca3771afab474e">
src/test/java/picard/illumina/CollectIlluminaBasecallingMetricsTest.java
</a>
</li>
<li class="file-stats">
<a href="#e1b7610ac081822bc869b241576e7cb24565e95a">
src/test/java/picard/illumina/ExtractIlluminaBarcodesTest.java
</a>
</li>
<li class="file-stats">
<a href="#916509529fd4b66c5557838d020d201d6b9921b7">
src/test/java/picard/illumina/parser/FilterParserTest.java
</a>
</li>
<li class="file-stats">
<a href="#47042314502a41f6758d5d534f7b8f4d1e996450">
src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTest.java
</a>
</li>
<li class="file-stats">
<a href="#754eaac80aeed7cf98a70fd23c33ca436613b0cc">
src/test/java/picard/sam/markduplicates/UmiUtilTest.java
</a>
</li>
<li class="file-stats">
<a href="#3c44e3e5eb22a09e90c4c23b3232c2fdda56ac9d">
testdata/picard/illumina/151T8B8B151T_cbcl/Data/Intensities/BaseCalls/s_1_1101_barcode.txt.gz
</a>
</li>
<li class="file-stats">
<a href="#971a7324d3259fbd2bc1abe13be49e918c57d477">
testdata/picard/illumina/151T8B8B151T_cbcl/Data/Intensities/BaseCalls/s_1_1102_barcode.txt.gz
</a>
</li>
<li class="file-stats">
<a href="#be3c2bcd0d53d74bb9e870efd33f725010a5708d">
testdata/picard/illumina/151T8B8B151T_cbcl/fastq/NN.1.fastq
</a>
</li>
<li class="file-stats">
<a href="#b5aec946ccfb0c854b9094ba2bccab5bd883a645">
testdata/picard/illumina/151T8B8B151T_cbcl/fastq/NN.2.fastq
</a>
</li>
<li class="file-stats">
<a href="#0b36bda2a264efe61db7b14ff0b709022f11e824">
testdata/picard/illumina/151T8B8B151T_cbcl/fastq/NN.barcode_1.fastq
</a>
</li>
<li class="file-stats">
<a href="#8506191367e07f8a80c6a0d9b26eb280edb3ac94">
testdata/picard/illumina/151T8B8B151T_cbcl/fastq/NN.barcode_2.fastq
</a>
</li>
<li class="file-stats">
<a href="#3aadcdc6893bc7af006edf8906d071b5dc87b7d3">
testdata/picard/illumina/151T8B8B151T_cbcl/sams/1102.NN.sam
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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