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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/blimps">Debian Med / blimps</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/blimps/commit/e23dae80c87f02af86bc371b839d1cc3f431d4b9">e23dae80</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-10T21:53:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Patch is not applicable since competing with quilt patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blimps/commit/2adb681a04b829ec34b00ac9195cf89ab82128e7">2adb681a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T06:55:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Hardening + debug symbols
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blimps/commit/1b6a0f56c51124efa5be039b7be9b66a3a15e41f">1b6a0f56</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T07:10:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refactor single patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blimps/commit/1b33f3bfb02576c4f02f2efa2d071522597dc8da">1b33f3bf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T07:42:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">More patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blimps/commit/2cb5f2572df48c79932cc5d05cefe87811b92d99">2cb5f257</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T08:52:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix format-security issues
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/blimps/commit/c2b943620baa785ce8b67efaca68f3aff0ab5457">c2b94362</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T12:23:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try hard to build even with hardening flags switched on
</pre>
</li>
</ul>
<h4>11 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#02fa010d76b92d1cdeab5e75ddc56c94b90265b8">
debian/blimps-utils.manpages
</a>
</li>
<li class="file-stats">
<a href="#c39c3547c6a92bbd3e7fbfaa20979f7dbfa6c270">
<span class="deleted-file">
−
debian/blimps.patch.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#c6f634a81c0a415b380decc637ed1edcd7449f28">
<span class="new-file">
+
debian/fastaseqs.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#3b07e0a4bb110bbc3509bc96806d0ac14afc0c53">
<span class="new-file">
+
debian/fastaseqs.pod
</span>
</a>
</li>
<li class="file-stats">
<a href="#128363c5297cbe87377a5e855ab9fc5f40e9eef3">
<span class="deleted-file">
−
debian/get-patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#72ee321ed67b77cc7d08977bddbda3fc8ae2cd9d">
<span class="new-file">
+
debian/patches/gets.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
<span class="new-file">
+
debian/patches/hardening.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#dc053169aa7f9d53c38ea6df4723f4380e6fd5cb">
debian/patches/patch001
→
debian/patches/makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="02fa010d76b92d1cdeab5e75ddc56c94b90265b8">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#02fa010d76b92d1cdeab5e75ddc56c94b90265b8"><strong>debian/blimps-utils.manpages</strong></a>
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1
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">usr/share/man/man1/fastaseqs.1.gz</span></span></pre>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">debian/fastaseqs.1</span></span></pre>
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</table>
<br>
</li>
<li id="c39c3547c6a92bbd3e7fbfaa20979f7dbfa6c270">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#c39c3547c6a92bbd3e7fbfaa20979f7dbfa6c270"><strong>debian/blimps.patch.txt</strong>
deleted
</a>
The diff for this file was not included because it is too large.
<br>
</li>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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1
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">blimps (3.9+ds-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
</pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">blimps (3.9+ds-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Homepage vanished - point to waybackmachine as homepage</span>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Rebuild tarball by droping all binaries</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,6 +6,8 @@ blimps (3.9+ds-1) unstable; urgency=medium</td>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * debhelper 12</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * Standards-Version: 4.3.0</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * hardening=+all</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Refactor single patch</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 10 Jan 2019 22:19:40 +0100</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<li id="c6f634a81c0a415b380decc637ed1edcd7449f28">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#c6f634a81c0a415b380decc637ed1edcd7449f28"><strong>debian/fastaseqs.1</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.\" Automatically generated by Pod::Man 4.10 (Pod::Simple 3.35)</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">.\"</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">.\" Standard preamble:</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">.\" ========================================================================</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">.de Sp \" Vertical space (when we can't use .PP)</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">.if t .sp .5v</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">.if n .sp</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">..</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">.de Vb \" Begin verbatim text</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">.ft CW</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">.nf</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">.ne \\$1</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">..</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">.de Ve \" End verbatim text</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">.ft R</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">.fi</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">..</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">.\" Set up some character translations and predefined strings. \*(-- will</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">.\" give an unbreakable dash, \*(PI will give pi, \*(L" will give a left</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">.\" double quote, and \*(R" will give a right double quote. \*(C+ will</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">.\" give a nicer C++. Capital omega is used to do unbreakable dashes and</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">.\" therefore won't be available. \*(C` and \*(C' expand to `' in nroff,</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">.\" nothing in troff, for use with C<>.</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">.tr \(*W-</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">.ds C+ C\v'-.1v'\h'-1p'\s-2+\h'-1p'+\s0\v'.1v'\h'-1p'</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">.ie n \{\</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">. ds -- \(*W-</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">. ds PI pi</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">. if (\n(.H=4u)&(1m=24u) .ds -- \(*W\h'-12u'\(*W\h'-12u'-\" diablo 10 pitch</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">. if (\n(.H=4u)&(1m=20u) .ds -- \(*W\h'-12u'\(*W\h'-8u'-\" diablo 12 pitch</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">. ds L" ""</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">. ds R" ""</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">. ds C` ""</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">. ds C' ""</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">'br\}</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">.el\{\</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">. ds -- \|\(em\|</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">. ds PI \(*p</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">. ds L" ``</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">. ds R" ''</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">. ds C`</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">. ds C'</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">'br\}</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">.\"</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">.\" Escape single quotes in literal strings from groff's Unicode transform.</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">.ie \n(.g .ds Aq \(aq</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">.el .ds Aq '</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">.\"</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">.\" If the F register is >0, we'll generate index entries on stderr for</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">.\" titles (.TH), headers (.SH), subsections (.SS), items (.Ip), and index</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">.\" entries marked with X<> in POD. Of course, you'll have to process the</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">.\" output yourself in some meaningful fashion.</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">.\"</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">.\" Avoid warning from groff about undefined register 'F'.</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">.de IX</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">..</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">.nr rF 0</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">.if \n(.g .if rF .nr rF 1</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">.if (\n(rF:(\n(.g==0)) \{\</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">. if \nF \{\</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">. de IX</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">. tm Index:\\$1\t\\n%\t"\\$2"</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">..</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">. if !\nF==2 \{\</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">. nr % 0</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">. nr F 2</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext">. \}</span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext">. \}</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">.\}</span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext">.rr rF</span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext">.\"</span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext">.\" Accent mark definitions (@(#)ms.acc 1.5 88/02/08 SMI; from UCB 4.2).</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext">.\" Fear. Run. Save yourself. No user-serviceable parts.</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext">. \" fudge factors for nroff and troff</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext">.if n \{\</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext">. ds #H 0</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext">. ds #V .8m</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">. ds #F .3m</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext">. ds #[ \f1</span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext">. ds #] \fP</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext">.\}</span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext">.if t \{\</span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext">. ds #H ((1u-(\\\\n(.fu%2u))*.13m)</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext">. ds #V .6m</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext">. ds #F 0</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext">. ds #[ \&</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext">. ds #] \&</span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext">.\}</span>
</pre>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext">. \" simple accents for nroff and troff</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext">.if n \{\</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext">. ds ' \&</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext">. ds ` \&</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext">. ds ^ \&</span>
</pre>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext">. ds , \&</span>
</pre>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">. ds ~ ~</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">. ds /</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">.\}</span>
</pre>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext">.if t \{\</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext">. ds ' \\k:\h'-(\\n(.wu*8/10-\*(#H)'\'\h"|\\n:u"</span>
</pre>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext">. ds ` \\k:\h'-(\\n(.wu*8/10-\*(#H)'\`\h'|\\n:u'</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext">. ds ^ \\k:\h'-(\\n(.wu*10/11-\*(#H)'^\h'|\\n:u'</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext">. ds , \\k:\h'-(\\n(.wu*8/10)',\h'|\\n:u'</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext">. ds ~ \\k:\h'-(\\n(.wu-\*(#H-.1m)'~\h'|\\n:u'</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext">. ds / \\k:\h'-(\\n(.wu*8/10-\*(#H)'\z\(sl\h'|\\n:u'</span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext">.\}</span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext">. \" troff and (daisy-wheel) nroff accents</span>
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext">.ds : \\k:\h'-(\\n(.wu*8/10-\*(#H+.1m+\*(#F)'\v'-\*(#V'\z.\h'.2m+\*(#F'.\h'|\\n:u'\v'\*(#V'</span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext">.ds 8 \h'\*(#H'\(*b\h'-\*(#H'</span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext">.ds o \\k:\h'-(\\n(.wu+\w'\(de'u-\*(#H)/2u'\v'-.3n'\*(#[\z\(de\v'.3n'\h'|\\n:u'\*(#]</span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext">.ds d- \h'\*(#H'\(pd\h'-\w'~'u'\v'-.25m'\f2\(hy\fP\v'.25m'\h'-\*(#H'</span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext">.ds D- D\\k:\h'-\w'D'u'\v'-.11m'\z\(hy\v'.11m'\h'|\\n:u'</span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext">.ds th \*(#[\v'.3m'\s+1I\s-1\v'-.3m'\h'-(\w'I'u*2/3)'\s-1o\s+1\*(#]</span>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext">.ds Th \*(#[\s+2I\s-2\h'-\w'I'u*3/5'\v'-.3m'o\v'.3m'\*(#]</span>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext">.ds ae a\h'-(\w'a'u*4/10)'e</span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext">.ds Ae A\h'-(\w'A'u*4/10)'E</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext">. \" corrections for vroff</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext">.if v .ds ~ \\k:\h'-(\\n(.wu*9/10-\*(#H)'\s-2\u~\d\s+2\h'|\\n:u'</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext">.if v .ds ^ \\k:\h'-(\\n(.wu*10/11-\*(#H)'\v'-.4m'^\v'.4m'\h'|\\n:u'</span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext">. \" for low resolution devices (crt and lpr)</span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext">.if \n(.H>23 .if \n(.V>19 \</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext">\{\</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext">. ds : e</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext">. ds 8 ss</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext">. ds o a</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext">. ds d- d\h'-1'\(ga</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext">. ds D- D\h'-1'\(hy</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext">. ds th \o'bp'</span>
</pre>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext">. ds Th \o'LP'</span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext">. ds ae ae</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext">. ds Ae AE</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext">.\}</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext">.rm #[ #] #H #V #F C</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext">.\" ========================================================================</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext">.\"</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext">.IX Title "FASTASEQS 1"</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext">.TH FASTASEQS 1 "2019-01-11" "3.9" "User Commands"</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext">.\" For nroff, turn off justification. Always turn off hyphenation; it makes</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext">.\" way too many mistakes in technical documents.</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext">.if n .ad l</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext">.nh</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext">.SH "NAME"</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext">fastaseqs \- converts a file of sequences to FASTA format</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext">.SH "SYNOPSIS"</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext">.IX Header "SYNOPSIS"</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext">fastaseqs <\s-1INPUTFILE\s0> <\s-1OUTPUTFILE\s0></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext">.SH "DESCRIPTION"</span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext">.IX Header "DESCRIPTION"</span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext">fastaseqs converts a file of sequences to \s-1FASTA\s0 format.</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext">.SH "AUTHOR"</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext">.IX Header "AUTHOR"</span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext">J. Henikoff</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext">.SH "COPYRIGHT AND LICENSE"</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext">.IX Header "COPYRIGHT AND LICENSE"</span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext">Copyright 1998, Fred Hutchinson Cancer Research Center</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext">.PP</span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext">Please refer to /usr/share/doc/*blimps*/copyright for the license.</span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext">.SH "SEE ALSO"</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext">.IX Header "SEE ALSO"</span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"><http://blocks.fhcrc.org/blocks/uploads/blimps/></span></pre>
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<li id="3b07e0a4bb110bbc3509bc96806d0ac14afc0c53">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#3b07e0a4bb110bbc3509bc96806d0ac14afc0c53"><strong>debian/fastaseqs.pod</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">=head1 NAME</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">fastaseqs - converts a file of sequences to FASTA format</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">=head1 SYNOPSIS</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">fastaseqs <INPUTFILE> <OUTPUTFILE></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">=head1 DESCRIPTION</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">fastaseqs converts a file of sequences to FASTA format.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">=head1 AUTHOR</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">J. Henikoff</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">=head1 COPYRIGHT AND LICENSE</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Copyright 1998, Fred Hutchinson Cancer Research Center</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Please refer to /usr/share/doc/*blimps*/copyright for the license.</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">=head1 SEE ALSO</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">L<http://blocks.fhcrc.org/blocks/uploads/blimps/></span></pre>
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<li id="128363c5297cbe87377a5e855ab9fc5f40e9eef3">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#128363c5297cbe87377a5e855ab9fc5f40e9eef3"><strong>debian/get-patch</strong>
deleted
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/sh -e</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell">wget <span class="nt" style="color: navy;">-N</span> https://web.archive.org/web/20170703191319/http://blocks.fhcrc.org/blocks/uploads/blimps/blimps.patch.txt</span></pre>
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<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#72ee321ed67b77cc7d08977bddbda3fc8ae2cd9d"><strong>debian/patches/gets.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Laszlo Kajan</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: 2012-01-31 17:21:48 +0000</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Description: replaced gets() with fgets()</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Remark: There is a patch at</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> https://web.archive.org/web/20170703191319/http://blocks.fhcrc.org/blocks/uploads/blimps/blimps.patch.txt</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> which tries to approach quite the same but is incompatible with the Debian patch and seems not to be needed</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/addseqs.c</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/addseqs.c</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -150,7 +150,7 @@ int main(argc, argv)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> printf("\nEnter name of file containing blocks: ");</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> if ( (fblk=fopen(infile, "r")) == NULL)</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -164,7 +164,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> printf("\nEnter name of sequence file: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(seqsfile);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(seqsfile, MAXNAME, stdin);</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> }</span>
</pre>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> if ( (fseq=fopen(seqsfile, "r")) == NULL)</span>
</pre>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> {</span>
</pre>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -177,7 +177,7 @@ int main(argc, argv)</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> else</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> {</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> printf("\nEnter name of output seqs file: ");</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
</pre>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, MAXNAME, stdin);</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> }</span>
</pre>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> if ( (fout=fopen(outfile, "w")) == NULL)</span>
</pre>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> {</span>
</pre>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/biassed_blocks_finder.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/biassed_blocks_finder.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -25,6 +25,11 @@ char x2c(char *what);</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> void unescape_url(char *url);</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> void plustospace(char *str);</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> */</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// lkajan: very nice but util.c does not have an interface defined</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// lkajan: can't figure out where this came from but it certainly picked up the wrong fmakeword</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+char *fmakeword(FILE *f, char stop, int *cl);</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+char *makeword(char *line, char stop);</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> </span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> entry entries[10000];</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -124,7 +129,7 @@ void write_block()</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> /* check that a block was specified */</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (BLOCK_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (BLOCK_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> printf("<H1>Error</H1>\n");</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> printf("You need to enter a block by writing or pasting a block in the window.<P>\n");</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -139,7 +144,7 @@ void write_block()</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> /* if block was pasted/written - */</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (BLOCK_Ptr->val[0] != NULL)</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (BLOCK_Ptr->val[0] != 0)</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> {</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> /* open up the block file to write to */</span>
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<td class="diff-line-num new new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -255,7 +260,7 @@ void display_output()</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> printf("<pre>\n");</span>
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<td class="diff-line-num new new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"> while (!feof(outf) && fgets(buf, LARGE_BUFF_LENGTH, outf) != NULL)</span>
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf(buf) ; </span></span>
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<td class="diff-line-num new new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("%s", buf) ; </span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"> printf("</pre>\n"); </span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"> </span>
</pre>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"> fclose(outf);</span>
</pre>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -264,7 +269,7 @@ void display_output()</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"> </span>
</pre>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"> /**********************************************************************/</span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"> </span>
</pre>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"> printf("Content-type: text/html\n\n\n");</span>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -301,6 +306,6 @@ void main(int argc, char *argv[]) {</span></span>
</pre>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"> clean_temp_files() ;</span>
</pre>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0) ;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0) ;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blalign.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blalign.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -119,7 +119,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
100
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"> printf("\nEnter name of file of blocks: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC101" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC104" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC105" class="line" lang="diff"> {</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC106" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/bldist.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/bldist.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -70,7 +70,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"> printf("\nEnter name of file of fasta multiple alignments: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> if ( (ifp=fopen(bdbname, "r")) == NULL)</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -94,7 +94,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
120
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC120" class="line" lang="diff"> printf("\nEnter name of file containing substitution matrix: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC121" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(sijname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
122
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC122" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(sijname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
124
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC124" class="line" lang="diff"> if ( (sfp=fopen(sijname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
125
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC125" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -127,7 +127,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
129
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC129" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
130
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC130" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
131
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC131" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC132" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC133" class="line" lang="diff"> if ( (ofp=fopen(outname, "w")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC134" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC135" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -140,7 +140,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
136
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC136" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC137" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
138
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC138" class="line" lang="diff"> printf("\nEnter type (S=similarity, D=dissimilarity, C=correlation): ");</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC139" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
140
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC140" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
</td>
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<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="diff"> OutType = 1; /* similarity is default */</span>
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="diff"> if (ctemp[0] == 'd' || ctemp[0] == 'D' || ctemp[0] == '2') OutType = 2;</span>
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blDR.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blDR.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -56,7 +56,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -69,7 +69,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="diff"> printf("\nSequence database must be in fasta format:");</span>
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<td class="diff-line-num new new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="diff"> printf("\nEnter name of sequence database: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(sdbname);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(sdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC162" class="line" lang="diff"> if ( (sfp=fopen(sdbname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -81,7 +81,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
166
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
167
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC167" class="line" lang="diff"> printf("\nEnter name of new blocks database: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC168" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
169
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC169" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
170
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC170" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
171
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC171" class="line" lang="diff"> if ( (ofp=fopen(outname, "w")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
172
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC172" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
173
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC173" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blexplode.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC174" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blexplode.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC175" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -29,7 +29,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC177" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC178" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC179" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC180" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC182" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC183" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC184" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2DR.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC185" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2DR.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
186
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC186" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -31,7 +31,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC187" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC188" class="line" lang="diff"> {</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC189" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC190" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
</td>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC194" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2GC.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC196" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2GC.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -30,7 +30,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC201" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC202" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="diff"> }</span>
</pre>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="diff"> {</span>
</pre>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2lis.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2lis.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -30,7 +30,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
212
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC212" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="diff"> {</span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2mot.c</span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2mot.c</span></span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -43,7 +43,7 @@ char *Seq[MAXSEQS]; /* sequences */</span></span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="diff"> char Seqname[MAXSEQS][SNAMELEN];</span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="diff"> </span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="diff"> /*=======================================================================*/</span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(argc, argv)</span></span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(argc, argv)</span></span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="diff"> int argc;</span>
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226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="diff"> char *argv[];</span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="diff"> {</span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -71,7 +71,7 @@ void main(argc, argv)</span></span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="diff"> else</span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="diff"> {</span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="diff"> printf("\nEnter name of file containing sequences: ");</span>
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232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(seqfile);</span></span>
</pre>
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233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(seqfile, FNAMELEN, stdin);</span></span>
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234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="diff"> }</span>
</pre>
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235
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="diff"> if ( (fseq=fopen(seqfile, "r")) == NULL)</span>
</pre>
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236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="diff"> {</span>
</pre>
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237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -92,7 +92,7 @@ void main(argc, argv)</span></span>
</pre>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="diff"> else</span>
</pre>
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239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="diff"> {</span>
</pre>
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240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="diff"> printf("\nEnter name of blocks file: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blkfile);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blkfile, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
244
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="diff"> if ( (fblk=fopen(blkfile, "r")) == NULL)</span>
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<td class="diff-line-num new new_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
245
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC245" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
246
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC246" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -126,7 +126,7 @@ void main(argc, argv)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="diff"> printf("\nEnter name of new motomat file: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(motfile);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(motfile, FNAMELEN, stdin);</span></span>
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252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="diff"> if ( (fmot=fopen(motfile, "wb")) == NULL)</span>
</pre>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="diff"> {</span>
</pre>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -135,7 +135,7 @@ void main(argc, argv)</span></span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="diff"> }</span>
</pre>
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257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="diff"> write_motifs(fmot, info, motif);</span>
</pre>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="diff"> fclose(fmot);</span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="diff"> } /* end of main */</span>
</pre>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="diff"> </span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="diff"> /*======================================================================</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2pssm.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2pssm.c</span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -67,7 +67,8 @@ int main(argc, argv)</span></span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="diff"> Block *block;</span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="diff"> Matrix *matrix, *logodds;</span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="diff"> char bdbname[MAXNAME], conname[MAXNAME];</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char ctemp[10];</span></span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define BLK2PSSM_CTEMPLEN 10</span></span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char ctemp[BLK2PSSM_CTEMPLEN];</span></span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="diff"> int format, type, itemp;</span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="diff"> </span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="diff"> ErrorLevelReport = 5; /* No blimps errors reported */</span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -87,7 +88,7 @@ int main(argc, argv)</span></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="diff"> else</span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="diff"> {</span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="diff"> printf("\nEnter name of BLOCKS input file: ");</span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="diff"> }</span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="diff"> {</span>
</pre>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -100,7 +101,7 @@ int main(argc, argv)</span></span>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="diff"> else</span>
</pre>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="diff"> {</span>
</pre>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="diff"> printf("\nEnter name of PSSM output file: ");</span>
</pre>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
</pre>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="diff"> }</span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
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<td class="diff-line-num new new_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="diff"> {</span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -115,7 +116,7 @@ int main(argc, argv)</span></span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="diff"> else</span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="diff"> printf("\nEnter PSSM format type (B=blimps, M=mast, G=Gribskov, P=Psi-Blast) [B]: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, BLK2PSSM_CTEMPLEN, stdin );</span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="diff"> }</span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="diff"> if (strlen(ctemp) && (ctemp[0] == 'm' || ctemp[0] == 'M'))</span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="diff"> { format = 1; type = 6; }</span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2slx.c</span></span>
</pre>
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304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2slx.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -35,7 +35,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="diff"> {</span>
</pre>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -48,7 +48,7 @@ int main(argc, argv)</span></span>
</pre>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
316
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC316" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
317
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC317" class="line" lang="diff"> printf("\nEnter name of new slx database: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
318
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC318" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
319
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC319" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
320
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC320" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
321
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC321" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
322
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC322" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
323
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC323" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blklis.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
324
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC324" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blklis.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
325
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC325" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -34,7 +34,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
326
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC326" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
327
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC327" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
328
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC328" class="line" lang="diff"> printf("\nEnter name of file of blocks: ");</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
329
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC329" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
330
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC330" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, 80, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
331
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC331" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="332" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
332
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC332" class="line" lang="diff"> if ( (fin=fopen(infile, "r")) == NULL)</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="333" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
333
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC333" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="334" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
334
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC334" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -46,7 +46,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
335
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC335" class="line" lang="diff"> else</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
336
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC336" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="337" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
337
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC337" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
338
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC338" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
339
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC339" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, 80, stdin );</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="340" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
340
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC340" class="line" lang="diff"> }</span>
</pre>
</td>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="diff"> if ( (fout=fopen(outfile, "w+")) == NULL)</span>
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342
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="diff"> {</span>
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343
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blkprob.c</span></span>
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344
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blkprob.c</span></span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -325,7 +325,7 @@ char *argv[];</span></span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="diff"> {</span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="diff"> printf("\nEnter number of hits to report or ");</span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="diff"> printf("blimps configuration file name [%d]: ", MaxHit);</span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, FNAMELEN, stdin);</span></span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="diff"> }</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="diff"> if (!strlen(ctemp)) strcpy(ctemp, "0");</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="diff"> for (i=0; i<strlen(ctemp); i++)</span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -353,7 +353,7 @@ char *argv[];</span></span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="diff"> else</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="diff"> {</span>
</pre>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="diff"> printf("\nEnter name of file containing blocks search results: ");</span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(homfile);</span></span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(homfile, FNAMELEN, stdin);</span></span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="diff"> }</span>
</pre>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="diff"> /*------------- arg 3: blocks database file -----------------------*/</span>
</pre>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="diff"> db[0] = '\0';</span>
</pre>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -362,7 +362,7 @@ char *argv[];</span></span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="diff"> else</span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="diff"> {</span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="diff"> printf("\nEnter name of blocks database searched: ");</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(datfile);</span></span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(datfile, FNAMELEN, stdin);</span></span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="diff"> }</span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="diff"> if (strlen(datfile))</span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="diff"> {</span>
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372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blocks.c</span></span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blocks.c</span></span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -891,7 +891,7 @@ void print_block(block)</span></span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="diff"> }</span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="diff"> } </span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="diff"> else {</span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf("??) \t");</span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("??" ") \t");</span></span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="diff"> for(k=0; k<block->clusters[i].sequences[j].length; k++) {</span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="diff"> printf("%c", aa_btoa[block->clusters[i].sequences[j].sequence[k]]);</span>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="diff"> }</span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blocks_search.c</span></span>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blocks_search.c</span></span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -302,8 +302,9 @@ fprintf(jgh,"Address_Ptr->val=%s\n", Add</span></span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="diff"> else if (!strncmp(entries[i].val, "pfam", 9))</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="diff"> { Pfam_Flag = TRUE; }</span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="diff"> }</span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- else if (!strncmp(entries[i].name, "bias", 4)) </span></span>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- { strcpy(Minus_Flag, entries[i].val); }</span></span>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// lkajan: what was the intention here? Looks like this would copy entries[i].val to the value of boolean Minus_Flag interpreted as a pointer - trigger to segfault?</span></span>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// else if (!strncmp(entries[i].name, "bias", 4))</span></span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// { strcpy(Minus_Flag, entries[i].val); }</span></span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="diff"> else if (!strncmp(entries[i].name, "ty", 2)) </span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="diff"> { strcpy(type, entries[i].val); }</span>
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396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="diff"> else if (!strncmp(entries[i].name, "st", 2)) </span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -379,7 +380,7 @@ void write_csh()</span></span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="diff"> </span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="diff"> cshp = fopen(csh_file, "w");</span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="diff"> </span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fprintf(cshp, "\#\!/bin/csh\n");</span></span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf(cshp, "#!/bin/csh\n");</span></span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="diff"> fprintf(cshp, "unalias mv\n");</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="diff"> fprintf(cshp, "%s %s >& /dev/null\n", blimps, cs_file);</span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="diff"> if (Title_Ptr != NULL)</span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -419,7 +420,7 @@ void write_csh()</span></span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="diff"> mailprog, email_addr, buf, Address_Ptr->val, blksort_output);</span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="diff"> }</span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="diff"> }</span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fprintf(cshp, "exit\(0\)\n");</span></span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf(cshp, "exit(0)\n");</span></span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="diff"> fclose(cshp);</span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="diff"> sprintf(buf, "chmod a+x %s", csh_file);</span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="diff"> system(buf);</span>
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<td class="diff-line-num new new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -433,7 +434,7 @@ void write_sequence()</span></span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="diff"> Boolean loop = TRUE;</span>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="diff"> int tot, sum;</span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="diff"> </span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Sequence_Ptr->val[0] == NULL) {</span></span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (Sequence_Ptr->val[0] == 0) {</span></span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="diff"> printf("<H1>Search Error</H1>\n");</span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="diff"> printf("You need to enter a sequence to search with.<P>\n");</span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="diff"> exit(0);</span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -562,7 +563,7 @@ void display_output()</span></span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="diff"> </span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="diff"> while (!feof(fp) &&</span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="diff"> fgets(buf, LARGE_BUFF_LENGTH, fp) != NULL) {</span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf(buf);</span></span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("%s", buf);</span></span>
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430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="diff"> }</span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="diff"> </span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="diff"> pclose(fp);</span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -581,7 +582,7 @@ void display_html()</span></span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="diff"> </span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="diff"> while (!feof(fp) &&</span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="diff"> fgets(buf, LARGE_BUFF_LENGTH, fp) != NULL) {</span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf(buf);</span></span>
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438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("%s", buf);</span></span>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="diff"> }</span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="diff"> </span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="diff"> fclose(fp);</span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -590,7 +591,7 @@ void display_html()</span></span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="diff"> </span>
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445
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="diff"> /*=======================================================================*/</span>
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446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="diff"> </span>
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449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="diff"> </span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="diff"> /*</span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -655,5 +656,5 @@ jgh = fopen("jorja.out", "w");</span></span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="diff"> /*</span>
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453
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="diff"> fclose(jgh);</span>
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454
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="diff"> */</span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="diff"> } /* end of main */</span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/block_vis.c</span></span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/block_vis.c</span></span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -868,7 +868,7 @@ void read_file(char *ifilename, char *of</span></span>
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461
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="diff"> * each input file. The only actual work done here is interpreting</span>
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462
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="diff"> * '*' in the output filename.</span>
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463
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="diff"> */</span>
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464
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[])</span></span>
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[])</span></span>
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="diff"> {</span>
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467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="diff"> int i1, i2, i3, i4;</span>
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="diff"> char out_filename[80];</span>
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -910,5 +910,7 @@ void main(int argc, char *argv[])</span></span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="diff"> /* No arguments? Give the user some help (and skip the warning above) */</span>
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471
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="diff"> if (argc == 1)</span>
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472
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="diff"> do_help();</span>
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473
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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474
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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475
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="diff"> }</span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="diff"> </span>
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477
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blpssm.c</span></span>
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478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blpssm.c</span></span>
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479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -241,7 +241,7 @@ int main(argc, argv)</span></span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="diff"> else</span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="diff"> {</span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(cfname);</span></span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(cfname, FNAMELEN, stdin);</span></span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="diff"> }</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="diff"> if ( (cfp=fopen(cfname, "r")) == NULL)</span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="diff"> {</span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blweight.c</span></span>
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489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blweight.c</span></span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -92,7 +92,8 @@ int main(argc, argv)</span></span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="diff"> FILE *bfp, *ofp;</span>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="diff"> Block *block, *cblock;</span>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="diff"> int wtype, clus, stype;</span>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char bdbname[MAXNAME], conname[MAXNAME], ctemp[10];</span></span>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define BLWEIGHT_CTEMPLEN 10</span></span>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char bdbname[MAXNAME], conname[MAXNAME], ctemp[BLWEIGHT_CTEMPLEN];</span></span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="diff"> struct timeval tv;</span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="diff"> </span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="diff"> ErrorLevelReport = 5; /* don't want to see them */</span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -119,7 +120,7 @@ int main(argc, argv)</span></span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="diff"> else</span>
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="diff"> {</span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( bdbname, MAXNAME, stdin );</span></span>
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506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="diff"> }</span>
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507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="diff"> {</span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -132,7 +133,7 @@ int main(argc, argv)</span></span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="diff"> else</span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="diff"> {</span>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="diff"> printf("\nEnter name of new weighted blocks database: ");</span>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( conname, MAXNAME, stdin );</span></span>
</pre>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="diff"> }</span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="diff"> {</span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -149,7 +150,7 @@ int main(argc, argv)</span></span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="diff"> {</span>
</pre>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="diff"> printf("\nEnter weighting scheme (P=position-based, V=Voronoi, ");</span>
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<td class="diff-line-num new new_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="diff"> printf("\n A=Vingron & Argos, Cn = n-percent cluster [P]: ");</span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin );</span></span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="diff"> }</span>
</pre>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="diff"> if (strlen(ctemp))</span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="diff"> {</span>
</pre>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -187,7 +188,7 @@ int main(argc, argv)</span></span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="diff"> else</span>
</pre>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="diff"> {</span>
</pre>
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530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="diff"> printf("\nEnter scale (M=>max=100, N=>sum=#seq, ###=>sum=###) [M]: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin );</span></span>
</pre>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="diff"> }</span>
</pre>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="diff"> if (strlen(ctemp))</span>
</pre>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="diff"> {</span>
</pre>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/cobbler.c</span></span>
</pre>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/cobbler.c</span></span>
</pre>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -256,7 +256,7 @@ int main(argc, argv)</span></span>
</pre>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="540" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="541" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="542" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(cfname);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="543" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
543
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC543" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(cfname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="545" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="diff"> if ( (cfp=fopen(cfname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="546" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
546
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC546" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/coduse.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="548" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
548
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/coduse.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="549" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
549
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -65,7 +65,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="550" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="552" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="diff"> printf("\nEnter name of CUTG spsum file: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="553" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="554" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, MAXNAME, stdin );</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="555" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
555
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="diff"> if ( (fin=fopen(infile, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="557" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
557
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC557" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="558" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -78,7 +78,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
560
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="diff"> printf("Enter organism name (leave blank for first organism in file): ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="562" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
562
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC562" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(organism);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="563" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(organism, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="diff"> if (strlen(organism))</span>
</pre>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -95,7 +95,7 @@ char *argv[];</span></span>
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<td class="diff-line-num new new_line" data-linenumber="568" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="diff"> printf("\nEnter name of Blimps codon usage output file: ");</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="573" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="diff"> if ( (fout=fopen(outfile, "w")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="575" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/email.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/email.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -35,7 +35,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
580
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC580" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
581
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="diff"> printf("\nEnter name of sequence file: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="582" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
582
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC582" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(filename);</span></span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="583" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
583
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC583" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(filename, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="584" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
584
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="585" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
585
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="diff"> if ( (bfp=fopen(filename, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
586
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC586" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/fastaseqs.c</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="588" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
588
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC588" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/fastaseqs.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="589" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -39,7 +39,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="591" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="592" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="diff"> printf("\nEnter name of input sequence file: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="593" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, MAXNAME, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="595" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
595
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="596" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
596
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="diff"> if ( (fin=fopen(infile, "r")) == NULL)</span>
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<td class="diff-line-num new new_line" data-linenumber="597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -52,7 +52,7 @@ int main(argc, argv)</span></span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="diff"> else</span>
</pre>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="601" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="602" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
</pre>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, MAXNAME, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="605" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="diff"> if ( (fout=fopen(outfile, "w")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="606" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="diff"> {</span>
</pre>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/find_biassed_blocks.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="608" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/find_biassed_blocks.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -290,7 +290,7 @@ int *min_cols;</span></span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="diff"> else /* get input file interactively */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="611" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="612" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="diff"> printf("\nEnter name of a file with blocks or block matrices: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="613" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="614" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="diff"> </span>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="diff"> if ( (*bfp=fopen(bdbname, "r")) == NULL)</span>
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/format_block.c</span></span>
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619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/format_block.c</span></span>
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -242,14 +242,14 @@ void clean_temp_files()</span></span>
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="diff"> }</span>
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622
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="diff"> </span>
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623
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="diff"> /* </span>
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624
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- * resize_block_sequences</span></span>
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625
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * fb_resize_block_sequences</span></span>
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626
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="diff"> * Increases the memory for the storage of the sequences of a block.</span>
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627
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="diff"> * Parameter:</span>
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<pre style="margin: 0;">+<span id="LC628" class="line" lang="diff"> * Block *block: the block to resize</span>
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="diff"> * Error codes: none</span>
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="diff"> */</span>
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631
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<pre style="margin: 0;">+<span id="LC631" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-static void resize_block_sequences(block)</span></span>
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<pre style="margin: 0;">+<span id="LC633" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+static void fb_resize_block_sequences(block)</span></span>
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<pre style="margin: 0;">+<span id="LC634" class="line" lang="diff"> Block *block;</span>
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635
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<pre style="margin: 0;">+<span id="LC635" class="line" lang="diff"> {</span>
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636
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="diff"> int i;</span>
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637
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -315,13 +315,13 @@ void make_block()</span></span>
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638
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<pre style="margin: 0;">+<span id="LC638" class="line" lang="diff"> /* check that obligatory fields have something */</span>
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639
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<pre style="margin: 0;">+<span id="LC639" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC640" class="line" lang="diff"> /* Note if sequence names and start positions not supplied */</span>
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641
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQ_NAMES_Ptr->val[0] == NULL) no_seq_names = 1 ;</span></span>
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642
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQ_NAMES_Ptr->val[0] == 0) no_seq_names = 1 ;</span></span>
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643
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="diff"> else no_seq_names = 0 ; </span>
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644
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="diff"> </span>
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645
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQ_POS_Ptr->val[0] == NULL) no_seq_pos = 1 ;</span></span>
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646
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQ_POS_Ptr->val[0] == 0) no_seq_pos = 1 ;</span></span>
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="diff"> else no_seq_pos = 0 ; </span>
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648
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="diff"> </span>
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649
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQS_Ptr->val[0] == NULL) </span></span>
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650
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQS_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="diff"> {</span>
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652
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="diff"> printf("<H1>Error</H1>\n");</span>
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="diff"> printf("No sequences specified.<P>\n");</span>
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -403,7 +403,7 @@ void make_block()</span></span>
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655
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="diff"> exit(0);</span>
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656
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<pre style="margin: 0;">+<span id="LC656" class="line" lang="diff"> }</span>
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657
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="diff"> </span>
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658
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MA_WIDTH_Ptr->val[0] != NULL && </span></span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MA_WIDTH_Ptr->val[0] != 0 &&</span></span>
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660
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="diff"> block->width != atoi (MA_WIDTH_Ptr->val))</span>
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661
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="diff"> {</span>
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662
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="diff"> printf("<H2>Warning</H2>\n");</span>
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663
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -470,15 +470,15 @@ void make_block()</span></span>
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664
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="diff"> if (seq_header)</span>
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC666" class="line" lang="diff"> /* skip blanks */</span>
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for(; isspace(SEQS_Ptr->val[i]) && SEQS_Ptr->val[i] != '/n' && </span></span>
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- SEQS_Ptr->val[i] != '/0'; i++) ;</span></span>
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669
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQS_Ptr->val[i] == '/n') /* no name is found in line */</span></span>
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<pre style="margin: 0;">+<span id="LC670" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for(; isspace(SEQS_Ptr->val[i]) && SEQS_Ptr->val[i] != '\n' &&</span></span>
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ SEQS_Ptr->val[i] != '\0'; i++) ;</span></span>
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQS_Ptr->val[i] == '\n') /* no name is found in line */</span></span>
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="diff"> sprintf(block->sequences[block->num_sequences].name, </span>
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="diff"> "%s%d", UNKNOWN_SEQ_NAME, block->num_sequences+1) ;</span>
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<pre style="margin: 0;">+<span id="LC675" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">+<span id="LC676" class="line" lang="diff"> /* copy first 20 chars or until a space is reached */</span>
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="diff"> for(k=0; !(isspace(SEQS_Ptr->val[i])) && k<20 &&</span>
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<pre style="margin: 0;">+<span id="LC678" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- SEQS_Ptr->val[i] != '/n' ; i++, k++) </span></span>
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<pre style="margin: 0;">+<span id="LC679" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ SEQS_Ptr->val[i] != '\n' ; i++, k++)</span></span>
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<pre style="margin: 0;">+<span id="LC680" class="line" lang="diff"> block->sequences[block->num_sequences].name[k] = SEQS_Ptr->val[i];</span>
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<pre style="margin: 0;">+<span id="LC681" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC682" class="line" lang="diff"> /* end string */</span>
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<pre style="margin: 0;">+<span id="LC683" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -520,7 +520,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">+<span id="LC684" class="line" lang="diff"> string[j] = '\0' ;</span>
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<pre style="margin: 0;">+<span id="LC685" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC686" class="line" lang="diff"> if (block->max_sequences <= block->num_sequences+1) </span>
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<pre style="margin: 0;">+<span id="LC687" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">+<span id="LC688" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fb_resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">+<span id="LC689" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC690" class="line" lang="diff"> /* process the sequence */</span>
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<pre style="margin: 0;">+<span id="LC691" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -623,7 +623,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">+<span id="LC693" class="line" lang="diff"> string[j] = '\0' ;</span>
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<pre style="margin: 0;">+<span id="LC694" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC695" class="line" lang="diff"> if (block->max_sequences <= k) </span>
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<pre style="margin: 0;">+<span id="LC696" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fb_resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">+<span id="LC698" class="line" lang="diff"> </span>
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699
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<pre style="margin: 0;">+<span id="LC699" class="line" lang="diff"> /* copy up to first 20 chars of name */</span>
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700
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<pre style="margin: 0;">+<span id="LC700" class="line" lang="diff"> strncpy(block->sequences[k].name,string,20) ;</span>
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<pre style="margin: 0;">+<span id="LC701" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -681,7 +681,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC703" class="line" lang="diff"> string[j] = '\0' ;</span>
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704
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<pre style="margin: 0;">+<span id="LC704" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC705" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (block->max_sequences <= k+1) resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">+<span id="LC706" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (block->max_sequences <= k+1) fb_resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">+<span id="LC707" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC708" class="line" lang="diff"> block->sequences[k].position = atoi(string) ;</span>
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709
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<pre style="margin: 0;">+<span id="LC709" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC710" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -703,7 +703,7 @@ void make_block()</span></span>
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711
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<pre style="margin: 0;">+<span id="LC711" class="line" lang="diff"> </span>
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712
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<pre style="margin: 0;">+<span id="LC712" class="line" lang="diff"> /* check that actual number of sequences is equal to </span>
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713
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<pre style="margin: 0;">+<span id="LC713" class="line" lang="diff"> what the user gave */</span>
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<pre style="margin: 0;">+<span id="LC714" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MA_SEQS_Ptr->val[0] != NULL && </span></span>
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<pre style="margin: 0;">+<span id="LC715" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MA_SEQS_Ptr->val[0] != 0 &&</span></span>
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<pre style="margin: 0;">+<span id="LC716" class="line" lang="diff"> block->num_sequences != atoi (MA_SEQS_Ptr->val))</span>
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<pre style="margin: 0;">+<span id="LC717" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC718" class="line" lang="diff"> printf("<H2>Warning</H2>\n");</span>
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719
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<pre style="margin: 0;">+<span id="LC719" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -719,7 +719,7 @@ void make_block()</span></span>
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720
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<pre style="margin: 0;">+<span id="LC720" class="line" lang="diff"> </span>
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721
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<pre style="margin: 0;">+<span id="LC721" class="line" lang="diff"> /* get block header data */</span>
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722
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<pre style="margin: 0;">+<span id="LC722" class="line" lang="diff"> </span>
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723
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<pre style="margin: 0;">+<span id="LC723" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (ID_Ptr->val[0] == NULL) </span></span>
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724
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<pre style="margin: 0;">+<span id="LC724" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (ID_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="diff"> strcpy(block->id, "None") ;</span>
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="diff"> else</span>
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727
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="diff"> strncpy(block->id,ID_Ptr->val, SMALL_BUFF_LENGTH) ;</span>
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<pre style="margin: 0;">+<span id="LC728" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -727,7 +727,7 @@ void make_block()</span></span>
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729
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<pre style="margin: 0;">+<span id="LC729" class="line" lang="diff"> strcat(block->id, "; BLOCK") ;</span>
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730
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<pre style="margin: 0;">+<span id="LC730" class="line" lang="diff"> </span>
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731
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="diff"> </span>
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732
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<pre style="margin: 0;">+<span id="LC732" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (AC_Ptr->val[0] == NULL) </span></span>
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733
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<pre style="margin: 0;">+<span id="LC733" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (AC_Ptr->val[0] == 0)</span></span>
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734
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="diff"> {</span>
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735
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<pre style="margin: 0;">+<span id="LC735" class="line" lang="diff"> strncpy(block->number, block->sequences[0].name, MAXAC) ;</span>
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736
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<pre style="margin: 0;">+<span id="LC736" class="line" lang="diff"> }</span>
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737
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -746,7 +746,7 @@ void make_block()</span></span>
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738
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<pre style="margin: 0;">+<span id="LC738" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC739" class="line" lang="diff"> strcpy(block->ac,block->number) ;</span>
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<pre style="margin: 0;">+<span id="LC740" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC741" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MIN_DIST_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">+<span id="LC742" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MIN_DIST_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">+<span id="LC743" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC744" class="line" lang="diff"> j = 10000 ;</span>
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<pre style="margin: 0;">+<span id="LC745" class="line" lang="diff"> for(i=0; i<block->num_sequences; i++) </span>
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<pre style="margin: 0;">+<span id="LC746" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -758,7 +758,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="diff"> block->ac, j) ;</span>
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<pre style="margin: 0;">+<span id="LC748" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC749" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC750" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MAX_DIST_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">+<span id="LC751" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MAX_DIST_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">+<span id="LC752" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC753" class="line" lang="diff"> j = 0 ;</span>
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<pre style="margin: 0;">+<span id="LC754" class="line" lang="diff"> for(i=0; i<block->num_sequences; i++) </span>
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<pre style="margin: 0;">+<span id="LC755" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -769,12 +769,12 @@ void make_block()</span></span>
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<pre style="margin: 0;">+<span id="LC756" class="line" lang="diff"> sprintf(block->ac, "%s,%d)",</span>
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<pre style="margin: 0;">+<span id="LC757" class="line" lang="diff"> block->ac, j) ;</span>
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<pre style="margin: 0;">+<span id="LC758" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC759" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (DE_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">+<span id="LC760" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (DE_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">+<span id="LC761" class="line" lang="diff"> strcpy(block->de, "None") ;</span>
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762
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<pre style="margin: 0;">+<span id="LC762" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">+<span id="LC763" class="line" lang="diff"> strncpy(block->de,DE_Ptr->val, SMALL_BUFF_LENGTH) ;</span>
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764
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<pre style="margin: 0;">+<span id="LC764" class="line" lang="diff"> </span>
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765
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<pre style="margin: 0;">+<span id="LC765" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MA_METH_Ptr->val[0] != NULL) </span></span>
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766
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<pre style="margin: 0;">+<span id="LC766" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MA_METH_Ptr->val[0] != 0)</span></span>
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767
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<pre style="margin: 0;">+<span id="LC767" class="line" lang="diff"> strncpy(block->bl,MA_METH_Ptr->val, SMALL_BUFF_LENGTH-25) ;</span>
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<td class="diff-line-num new new_line" data-linenumber="768" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
768
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<pre style="margin: 0;">+<span id="LC768" class="line" lang="diff"> else</span>
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769
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<pre style="margin: 0;">+<span id="LC769" class="line" lang="diff"> strcpy(block->bl,"Method unspecified") ;</span>
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<td class="diff-line-num new new_line" data-linenumber="770" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
770
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<pre style="margin: 0;">+<span id="LC770" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -881,7 +881,7 @@ void display_output()</span></span>
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771
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<pre style="margin: 0;">+<span id="LC771" class="line" lang="diff"> }</span>
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772
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<pre style="margin: 0;">+<span id="LC772" class="line" lang="diff"> </span>
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773
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<pre style="margin: 0;">+<span id="LC773" class="line" lang="diff"> </span>
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774
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<pre style="margin: 0;">+<span id="LC774" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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775
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<pre style="margin: 0;">+<span id="LC775" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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776
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<pre style="margin: 0;">+<span id="LC776" class="line" lang="diff"> </span>
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777
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<pre style="margin: 0;">+<span id="LC777" class="line" lang="diff"> printf("Content-type: text/html\n\n\n");</span>
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778
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<pre style="margin: 0;">+<span id="LC778" class="line" lang="diff"> </span>
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779
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<pre style="margin: 0;">+<span id="LC779" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -918,6 +918,6 @@ void main(int argc, char *argv[]) {</span></span>
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780
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<pre style="margin: 0;">+<span id="LC780" class="line" lang="diff"> </span>
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781
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<pre style="margin: 0;">+<span id="LC781" class="line" lang="diff"> clean_temp_files() ;</span>
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782
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<pre style="margin: 0;">+<span id="LC782" class="line" lang="diff"> </span>
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783
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<pre style="margin: 0;">+<span id="LC783" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0) ;</span></span>
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784
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<pre style="margin: 0;">+<span id="LC784" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0) ;</span></span>
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785
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<pre style="margin: 0;">+<span id="LC785" class="line" lang="diff"> }</span>
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786
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<pre style="margin: 0;">+<span id="LC786" class="line" lang="diff"> </span>
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787
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<pre style="margin: 0;">+<span id="LC787" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/htmlize-codehop.c</span></span>
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788
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<pre style="margin: 0;">+<span id="LC788" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/htmlize-codehop.c</span></span>
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789
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<pre style="margin: 0;">+<span id="LC789" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -47,7 +47,7 @@ void insert_ohead();</span></span>
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790
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<pre style="margin: 0;">+<span id="LC790" class="line" lang="diff"> void condense();</span>
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791
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<pre style="margin: 0;">+<span id="LC791" class="line" lang="diff"> </span>
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792
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<pre style="margin: 0;">+<span id="LC792" class="line" lang="diff"> /*======================================================================*/</span>
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793
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<pre style="margin: 0;">+<span id="LC793" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(argc, argv)</span></span>
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794
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<pre style="margin: 0;">+<span id="LC794" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(argc, argv)</span></span>
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795
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<pre style="margin: 0;">+<span id="LC795" class="line" lang="diff"> int argc;</span>
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796
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<pre style="margin: 0;">+<span id="LC796" class="line" lang="diff"> char *argv[];</span>
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797
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<pre style="margin: 0;">+<span id="LC797" class="line" lang="diff"> {</span>
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798
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<pre style="margin: 0;">+<span id="LC798" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -250,7 +250,7 @@ char *argv[];</span></span>
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799
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<pre style="margin: 0;">+<span id="LC799" class="line" lang="diff"> printf("\n%d blocks, %d oligos processed\n", nblock, noligo);</span>
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800
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<pre style="margin: 0;">+<span id="LC800" class="line" lang="diff"> */</span>
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801
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<pre style="margin: 0;">+<span id="LC801" class="line" lang="diff"> </span>
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802
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<pre style="margin: 0;">+<span id="LC802" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
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803
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<pre style="margin: 0;">+<span id="LC803" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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804
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<pre style="margin: 0;">+<span id="LC804" class="line" lang="diff"> } /* end of main */</span>
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805
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<pre style="margin: 0;">+<span id="LC805" class="line" lang="diff"> /*=========================================================================*/</span>
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806
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<pre style="margin: 0;">+<span id="LC806" class="line" lang="diff"> struct olist *make_olist()</span>
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807
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<pre style="margin: 0;">+<span id="LC807" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/htmlize-LAMA.c</span></span>
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808
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<pre style="margin: 0;">+<span id="LC808" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/htmlize-LAMA.c</span></span>
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809
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<pre style="margin: 0;">+<span id="LC809" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -13,6 +13,7 @@</span></span>
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810
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<pre style="margin: 0;">+<span id="LC810" class="line" lang="diff"> </span>
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811
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<pre style="margin: 0;">+<span id="LC811" class="line" lang="diff"> #include <stdlib.h></span>
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812
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<pre style="margin: 0;">+<span id="LC812" class="line" lang="diff"> #include <stdio.h></span>
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813
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<pre style="margin: 0;">+<span id="LC813" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <string.h></span></span>
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<td class="diff-line-num new new_line" data-linenumber="814" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
814
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<pre style="margin: 0;">+<span id="LC814" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="815" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
815
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<pre style="margin: 0;">+<span id="LC815" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="816" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
816
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<pre style="margin: 0;">+<span id="LC816" class="line" lang="diff"> #define TRUE 1</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="817" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
817
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<pre style="margin: 0;">+<span id="LC817" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/interpro.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="818" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
818
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<pre style="margin: 0;">+<span id="LC818" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/interpro.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
819
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<pre style="margin: 0;">+<span id="LC819" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -94,7 +94,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="820" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
820
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<pre style="margin: 0;">+<span id="LC820" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="821" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
821
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<pre style="margin: 0;">+<span id="LC821" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="822" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
822
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<pre style="margin: 0;">+<span id="LC822" class="line" lang="diff"> printf("\nEnter name of interpro xml file: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="823" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
823
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<pre style="margin: 0;">+<span id="LC823" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(iprfile);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="824" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
824
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<pre style="margin: 0;">+<span id="LC824" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(iprfile, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="825" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
825
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<pre style="margin: 0;">+<span id="LC825" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="826" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
826
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<pre style="margin: 0;">+<span id="LC826" class="line" lang="diff"> if ( (fip=fopen(iprfile, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="827" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
827
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<pre style="margin: 0;">+<span id="LC827" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="828" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
828
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<pre style="margin: 0;">+<span id="LC828" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -108,7 +108,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
829
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<pre style="margin: 0;">+<span id="LC829" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="830" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
830
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<pre style="margin: 0;">+<span id="LC830" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="831" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
831
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<pre style="margin: 0;">+<span id="LC831" class="line" lang="diff"> printf("\nEnter name of interpro entry or all : ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="832" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
832
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<pre style="margin: 0;">+<span id="LC832" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(iprname);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="833" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
833
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<pre style="margin: 0;">+<span id="LC833" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(iprname, MAXAC, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="834" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
834
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<pre style="margin: 0;">+<span id="LC834" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="835" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
835
</td>
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<pre style="margin: 0;">+<span id="LC835" class="line" lang="diff"> if (!strlen(iprname)) strcpy(iprname, "all");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="836" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
836
</td>
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<pre style="margin: 0;">+<span id="LC836" class="line" lang="diff"> All = NO;</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="837" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
837
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<pre style="margin: 0;">+<span id="LC837" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/LAMA.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="838" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
838
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<pre style="margin: 0;">+<span id="LC838" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/LAMA.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="839" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
839
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<pre style="margin: 0;">+<span id="LC839" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -400,12 +400,12 @@ double *Z_cutoff ;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="840" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
840
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<pre style="margin: 0;">+<span id="LC840" class="line" lang="diff"> else /* get input file(s) interactively */</span>
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<td class="diff-line-num new new_line" data-linenumber="841" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
841
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<pre style="margin: 0;">+<span id="LC841" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="842" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
842
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<pre style="margin: 0;">+<span id="LC842" class="line" lang="diff"> printf("\nEnter name of a file with blocks or block matrices: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="843" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
843
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<pre style="margin: 0;">+<span id="LC843" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname[0]);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="844" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
844
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<pre style="margin: 0;">+<span id="LC844" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname[0], MAXNAME, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="845" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
845
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<pre style="margin: 0;">+<span id="LC845" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="846" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
846
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<pre style="margin: 0;">+<span id="LC846" class="line" lang="diff"> printf("\nThe blocks/matrices in this file will be intercompared.\n");</span>
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<td class="diff-line-num new new_line" data-linenumber="847" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
847
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<pre style="margin: 0;">+<span id="LC847" class="line" lang="diff"> printf("If you wish to compare them against blocks/matrices in\n");</span>
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848
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<pre style="margin: 0;">+<span id="LC848" class="line" lang="diff"> printf("another file enter that file name (else just hit <ENTER>).\n");</span>
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849
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<pre style="margin: 0;">+<span id="LC849" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname[1]);</span></span>
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850
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<pre style="margin: 0;">+<span id="LC850" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname[1], MAXNAME, stdin);</span></span>
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851
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<pre style="margin: 0;">+<span id="LC851" class="line" lang="diff"> </span>
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852
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<pre style="margin: 0;">+<span id="LC852" class="line" lang="diff"> if (bdbname[1][0] == '\0') *inpfiles = 1 ;</span>
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853
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<pre style="margin: 0;">+<span id="LC853" class="line" lang="diff"> else *inpfiles = 2 ;</span>
</pre>
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854
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<pre style="margin: 0;">+<span id="LC854" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -426,7 +426,7 @@ double *Z_cutoff ;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="855" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
855
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<pre style="margin: 0;">+<span id="LC855" class="line" lang="diff"> else</span>
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856
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<pre style="margin: 0;">+<span id="LC856" class="line" lang="diff"> {</span>
</pre>
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857
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<pre style="margin: 0;">+<span id="LC857" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
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858
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<pre style="margin: 0;">+<span id="LC858" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="859" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
859
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<pre style="margin: 0;">+<span id="LC859" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
</pre>
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860
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<pre style="margin: 0;">+<span id="LC860" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="861" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
861
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<pre style="margin: 0;">+<span id="LC861" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="862" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
862
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<pre style="margin: 0;">+<span id="LC862" class="line" lang="diff"> if ( (*out=fopen(outname, "w")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="863" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
863
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<pre style="margin: 0;">+<span id="LC863" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1621,6 +1621,7 @@ FILE *db ;</span></span>
</pre>
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864
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<pre style="margin: 0;">+<span id="LC864" class="line" lang="diff"> {</span>
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865
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<pre style="margin: 0;">+<span id="LC865" class="line" lang="diff"> Block *block ;</span>
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866
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<pre style="margin: 0;">+<span id="LC866" class="line" lang="diff"> char line[MAXLINELEN], word[MAXLINELEN], entry_name[MAXLINELEN] ;</span>
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867
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<pre style="margin: 0;">+<span id="LC867" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char tmpbuf[2*MAXLINELEN]; /* Store fully word+entry_name before stripping to SMALL_BUFF_LENGTH */</span></span>
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868
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<pre style="margin: 0;">+<span id="LC868" class="line" lang="diff"> char *ptr, *iptr ;</span>
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869
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<pre style="margin: 0;">+<span id="LC869" class="line" lang="diff"> int i1, i2, num_seqs, rc, max_pos, min_pos, temp ;</span>
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870
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<pre style="margin: 0;">+<span id="LC870" class="line" lang="diff"> Sequence *sequence_pointer ;</span>
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871
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<pre style="margin: 0;">+<span id="LC871" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1654,11 +1655,13 @@ FILE *db ;</span></span>
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872
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<pre style="margin: 0;">+<span id="LC872" class="line" lang="diff"> </span>
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873
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<pre style="margin: 0;">+<span id="LC873" class="line" lang="diff"> strcpy(entry_name, ptr) ;</span>
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874
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<pre style="margin: 0;">+<span id="LC874" class="line" lang="diff"> /* save first word in block accession */</span>
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875
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<pre style="margin: 0;">+<span id="LC875" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(block->ac, "%s%s;", word, entry_name) ;</span></span>
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876
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<pre style="margin: 0;">+<span id="LC876" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(block->number, "%s%s", word, entry_name) ;</span></span>
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877
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<pre style="margin: 0;">+<span id="LC877" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sprintf(tmpbuf, "%s%s;", word, entry_name) ; /* block->ac is only SMALL_BUFF_LENGTH */</span></span>
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878
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<pre style="margin: 0;">+<span id="LC878" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ strncpy(block->ac, tmpbuf, SMALL_BUFF_LENGTH);</span></span>
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879
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<pre style="margin: 0;">+<span id="LC879" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ strncpy(block->number, tmpbuf, SMALL_BUFF_LENGTH);</span></span>
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880
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<pre style="margin: 0;">+<span id="LC880" class="line" lang="diff"> </span>
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881
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<pre style="margin: 0;">+<span id="LC881" class="line" lang="diff"> /* save first word in block ID */</span>
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882
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<pre style="margin: 0;">+<span id="LC882" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(block->id, "%s; ProDom_mul", entry_name) ;</span></span>
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883
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<pre style="margin: 0;">+<span id="LC883" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sprintf(tmpbuf, "%s; ProDom_mul", entry_name) ;</span></span>
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884
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<pre style="margin: 0;">+<span id="LC884" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ strncpy(block->id, tmpbuf, SMALL_BUFF_LENGTH);</span></span>
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885
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<pre style="margin: 0;">+<span id="LC885" class="line" lang="diff"> </span>
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886
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<pre style="margin: 0;">+<span id="LC886" class="line" lang="diff"> /* get second word - number of sequences between parethesis */</span>
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887
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<pre style="margin: 0;">+<span id="LC887" class="line" lang="diff"> if ((ptr = get_token(NULL)) == NULL) </span>
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888
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<pre style="margin: 0;">+<span id="LC888" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/LAMA_search.c</span></span>
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889
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<pre style="margin: 0;">+<span id="LC889" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/LAMA_search.c</span></span>
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890
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<pre style="margin: 0;">+<span id="LC890" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -104,7 +104,7 @@ char blplusdbase[LARGE_BUFF_LENGTH]; /*</span></span>
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<pre style="margin: 0;">+<span id="LC891" class="line" lang="diff"> char targetdbase[LARGE_BUFF_LENGTH]; /* user target blocks db */</span>
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892
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<pre style="margin: 0;">+<span id="LC892" class="line" lang="diff"> char mail_file[LARGE_BUFF_LENGTH];</span>
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893
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<pre style="margin: 0;">+<span id="LC893" class="line" lang="diff"> char email_addr[LARGE_BUFF_LENGTH];</span>
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<pre style="margin: 0;">+<span id="LC894" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-char buf[LARGE_BUFF_LENGTH];</span></span>
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895
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<pre style="margin: 0;">+<span id="LC895" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+static char buf[LARGE_BUFF_LENGTH];</span></span>
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<pre style="margin: 0;">+<span id="LC896" class="line" lang="diff"> </span>
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897
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<pre style="margin: 0;">+<span id="LC897" class="line" lang="diff"> int pid;</span>
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898
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<pre style="margin: 0;">+<span id="LC898" class="line" lang="diff"> </span>
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899
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<pre style="margin: 0;">+<span id="LC899" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -281,7 +281,7 @@ void write_Qblock()</span></span>
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900
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<pre style="margin: 0;">+<span id="LC900" class="line" lang="diff"> </span>
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901
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<pre style="margin: 0;">+<span id="LC901" class="line" lang="diff"> </span>
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902
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<pre style="margin: 0;">+<span id="LC902" class="line" lang="diff"> /* check that a block was specified */</span>
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903
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<pre style="margin: 0;">+<span id="LC903" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Qblock_Ptr->val[0] == NULL) </span></span>
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904
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<pre style="margin: 0;">+<span id="LC904" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (Qblock_Ptr->val[0] == 0)</span></span>
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905
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<pre style="margin: 0;">+<span id="LC905" class="line" lang="diff"> {</span>
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906
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<pre style="margin: 0;">+<span id="LC906" class="line" lang="diff"> printf("<H1>Search Error</H1>\n");</span>
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907
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<pre style="margin: 0;">+<span id="LC907" class="line" lang="diff"> printf("You need to enter a block to search with by writing or pasting a block in the query block window.<P>\n");</span>
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908
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<pre style="margin: 0;">+<span id="LC908" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -296,7 +296,7 @@ void write_Qblock()</span></span>
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909
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<pre style="margin: 0;">+<span id="LC909" class="line" lang="diff"> </span>
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910
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<pre style="margin: 0;">+<span id="LC910" class="line" lang="diff"> </span>
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911
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<pre style="margin: 0;">+<span id="LC911" class="line" lang="diff"> /* if block was pasted/written - */</span>
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912
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<pre style="margin: 0;">+<span id="LC912" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Qblock_Ptr->val[0] != NULL)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="913" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
913
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<pre style="margin: 0;">+<span id="LC913" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (Qblock_Ptr->val[0] != 0)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="914" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
914
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<pre style="margin: 0;">+<span id="LC914" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
915
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<pre style="margin: 0;">+<span id="LC915" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="916" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
916
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<pre style="margin: 0;">+<span id="LC916" class="line" lang="diff"> /* open up the block file to write to */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
917
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<pre style="margin: 0;">+<span id="LC917" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -535,7 +535,7 @@ void convert_LAMA_output()</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
918
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<pre style="margin: 0;">+<span id="LC918" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="919" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
919
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<pre style="margin: 0;">+<span id="LC919" class="line" lang="diff"> while (!feof(fp) &&</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
920
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<pre style="margin: 0;">+<span id="LC920" class="line" lang="diff"> fgets(buf, LARGE_BUFF_LENGTH, fp) != NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="921" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
921
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC921" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf(buf) ;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="922" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
922
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<pre style="margin: 0;">+<span id="LC922" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("%s", buf) ;</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="923" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
923
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<pre style="margin: 0;">+<span id="LC923" class="line" lang="diff"> </span>
</pre>
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924
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<pre style="margin: 0;">+<span id="LC924" class="line" lang="diff"> printf("</pre>\n");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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925
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<pre style="margin: 0;">+<span id="LC925" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="926" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
926
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<pre style="margin: 0;">+<span id="LC926" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -579,7 +579,7 @@ void queue_to_mail()</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="927" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
927
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<pre style="margin: 0;">+<span id="LC927" class="line" lang="diff"> /* mail the person the results */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="928" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
928
</td>
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<pre style="margin: 0;">+<span id="LC928" class="line" lang="diff"> /* NOTE: need to echo the header lines for the LAMA output :P */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="929" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
929
</td>
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<pre style="margin: 0;">+<span id="LC929" class="line" lang="diff"> /* NOTE: all this should need to do is to cat the ouput file. */</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="930" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
930
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<pre style="margin: 0;">+<span id="LC930" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(buf, "%s %s '(cat %s) | /usr/bin/mailx -s \"LAMA Results\" -r \"blocks\@fhcrc.org\" %s'", add_queue_entry, LAMA_queue, LAMA_output, Address_Ptr->val);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="931" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
931
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<pre style="margin: 0;">+<span id="LC931" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sprintf(buf, "%s %s '(cat %s) | /usr/bin/mailx -s \"LAMA Results\" -r \"blocks@fhcrc.org\" %s'", add_queue_entry, LAMA_queue, LAMA_output, Address_Ptr->val);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="932" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
932
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<pre style="margin: 0;">+<span id="LC932" class="line" lang="diff"> system(buf);</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="933" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
933
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<pre style="margin: 0;">+<span id="LC933" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="934" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
934
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<pre style="margin: 0;">+<span id="LC934" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="935" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
935
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<pre style="margin: 0;">+<span id="LC935" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -666,7 +666,7 @@ printf("%s=%d\n", buf, returnCode);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="936" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
936
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<pre style="margin: 0;">+<span id="LC936" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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937
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<pre style="margin: 0;">+<span id="LC937" class="line" lang="diff"> } /* end of run Cyrca */</span>
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<td class="diff-line-num new new_line" data-linenumber="938" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
938
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<pre style="margin: 0;">+<span id="LC938" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="939" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
939
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<pre style="margin: 0;">+<span id="LC939" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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940
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<pre style="margin: 0;">+<span id="LC940" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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941
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<pre style="margin: 0;">+<span id="LC941" class="line" lang="diff"> </span>
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942
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<pre style="margin: 0;">+<span id="LC942" class="line" lang="diff"> printf("Content-type: text/html\n\n\n");</span>
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943
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<pre style="margin: 0;">+<span id="LC943" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
944
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<pre style="margin: 0;">+<span id="LC944" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -715,5 +715,5 @@ void main(int argc, char *argv[]) {</span></span>
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945
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<pre style="margin: 0;">+<span id="LC945" class="line" lang="diff"> </span>
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946
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<pre style="margin: 0;">+<span id="LC946" class="line" lang="diff"> clean_temp_files() ;</span>
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947
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<pre style="margin: 0;">+<span id="LC947" class="line" lang="diff"> </span>
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948
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<pre style="margin: 0;">+<span id="LC948" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0) ;</span></span>
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949
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<pre style="margin: 0;">+<span id="LC949" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0) ;</span></span>
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950
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<pre style="margin: 0;">+<span id="LC950" class="line" lang="diff"> }</span>
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951
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<pre style="margin: 0;">+<span id="LC951" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/lisblk.c</span></span>
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952
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<pre style="margin: 0;">+<span id="LC952" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/lisblk.c</span></span>
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953
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<pre style="margin: 0;">+<span id="LC953" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -33,7 +33,7 @@ char Pros[FNAMELEN];</span></span>
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954
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<pre style="margin: 0;">+<span id="LC954" class="line" lang="diff"> char Title[MAXLINE];</span>
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955
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<pre style="margin: 0;">+<span id="LC955" class="line" lang="diff"> </span>
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956
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<pre style="margin: 0;">+<span id="LC956" class="line" lang="diff"> /*======================================================================*/</span>
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957
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<pre style="margin: 0;">+<span id="LC957" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(argc, argv)</span></span>
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958
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<pre style="margin: 0;">+<span id="LC958" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(argc, argv)</span></span>
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959
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<pre style="margin: 0;">+<span id="LC959" class="line" lang="diff"> int argc;</span>
</pre>
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960
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<pre style="margin: 0;">+<span id="LC960" class="line" lang="diff"> char *argv[];</span>
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961
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<pre style="margin: 0;">+<span id="LC961" class="line" lang="diff"> {</span>
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962
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<pre style="margin: 0;">+<span id="LC962" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -53,7 +53,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="963" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
963
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC963" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="964" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
964
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC964" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="965" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
965
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC965" class="line" lang="diff"> printf("\nEnter name of file containing list of sequences: ");</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="966" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
966
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC966" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(lisfile);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="967" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
967
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC967" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(lisfile, FNAMELEN, stdin);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="968" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
968
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC968" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="969" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
969
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC969" class="line" lang="diff"> if ( (flis=fopen(lisfile, "r")) == NULL)</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="970" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
970
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC970" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="971" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
971
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC971" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -69,7 +69,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="972" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
972
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC972" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="973" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
973
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC973" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="974" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
974
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC974" class="line" lang="diff"> printf("\nEnter name of block file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="975" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
975
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC975" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blkfile);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="976" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
976
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC976" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blkfile, FNAMELEN, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="977" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
977
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC977" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="978" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
978
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC978" class="line" lang="diff"> </span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="979" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
979
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC979" class="line" lang="diff"> if ((fblk=fopen(blkfile, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="980" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
980
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC980" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -85,7 +85,7 @@ char *argv[];</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="981" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
981
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC981" class="line" lang="diff"> if ((fblk=fopen(blkfile, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="982" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
982
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC982" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="983" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
983
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC983" class="line" lang="diff"> printf("\nEnter name of block file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="984" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
984
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC984" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blkfile);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="985" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
985
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC985" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blkfile, FNAMELEN, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="986" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
986
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC986" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="987" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
987
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<pre style="margin: 0;">+<span id="LC987" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="988" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
988
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<pre style="margin: 0;">+<span id="LC988" class="line" lang="diff"> if (fblk == NULL)</span>
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<td class="diff-line-num new new_line" data-linenumber="989" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
989
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<pre style="margin: 0;">+<span id="LC989" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -147,7 +147,7 @@ char *argv[];</span></span>
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990
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<pre style="margin: 0;">+<span id="LC990" class="line" lang="diff"> fclose(fout);</span>
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991
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<pre style="margin: 0;">+<span id="LC991" class="line" lang="diff"> </span>
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992
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<pre style="margin: 0;">+<span id="LC992" class="line" lang="diff"> printf("\n");</span>
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<td class="diff-line-num new new_line" data-linenumber="993" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
993
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<pre style="margin: 0;">+<span id="LC993" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
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994
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<pre style="margin: 0;">+<span id="LC994" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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995
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<pre style="margin: 0;">+<span id="LC995" class="line" lang="diff"> } /* end of main */</span>
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996
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<pre style="margin: 0;">+<span id="LC996" class="line" lang="diff"> /*================================================================*/</span>
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997
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<pre style="margin: 0;">+<span id="LC997" class="line" lang="diff"> int flag_ids(block, ids)</span>
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998
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<pre style="margin: 0;">+<span id="LC998" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/mablock.c</span></span>
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999
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<pre style="margin: 0;">+<span id="LC999" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/mablock.c</span></span>
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1000
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<pre style="margin: 0;">+<span id="LC1000" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -102,7 +102,8 @@ int main(argc, argv)</span></span>
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1001
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<pre style="margin: 0;">+<span id="LC1001" class="line" lang="diff"> {</span>
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1002
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<pre style="margin: 0;">+<span id="LC1002" class="line" lang="diff"> FILE *ifp, *bfp, *sfp;</span>
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1003
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<pre style="margin: 0;">+<span id="LC1003" class="line" lang="diff"> Sequence *seqs[MAXSEQ];</span>
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1004
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<pre style="margin: 0;">+<span id="LC1004" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char ctemp[MAXNAME], bdbname[MAXNAME], outtype[10], *ptr;</span></span>
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1005
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<pre style="margin: 0;">+<span id="LC1005" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define MABLOCK_OUTTYPELEN 10</span></span>
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1006
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<pre style="margin: 0;">+<span id="LC1006" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char ctemp[MAXNAME], bdbname[MAXNAME], outtype[MABLOCK_OUTTYPELEN], *ptr;</span></span>
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1007
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<pre style="margin: 0;">+<span id="LC1007" class="line" lang="diff"> int db_type, seq_type, nseq, i, bflag, ftype;</span>
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1008
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<pre style="margin: 0;">+<span id="LC1008" class="line" lang="diff"> struct blocks_list *blocks;</span>
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1009
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<pre style="margin: 0;">+<span id="LC1009" class="line" lang="diff"> Block *block;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1010" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1010
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<pre style="margin: 0;">+<span id="LC1010" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -127,7 +128,7 @@ int main(argc, argv)</span></span>
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1011
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<pre style="margin: 0;">+<span id="LC1011" class="line" lang="diff"> else</span>
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1012
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1012" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1013" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1013
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1013" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1014" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1014
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1014" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1015" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1015
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1015" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( bdbname, MAXNAME, stdin );</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1016" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1016
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1016" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1017" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1017
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1017" class="line" lang="diff"> if ( (ifp=fopen(bdbname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1018" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1018
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1018" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1019
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1019" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -157,7 +158,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1020" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1020
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1020" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1021
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1021" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1022
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1022" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1023" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1023
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1023" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(OutName);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1024" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1024
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1024" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( OutName, MAXNAME, stdin );</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1025" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1025
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1025" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1026" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1026
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1026" class="line" lang="diff"> strcpy(ctemp, OutName); strcat(ctemp, ".blks");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1027" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1027
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1027" class="line" lang="diff"> if ( (bfp=fopen(ctemp, "w")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1028
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1028" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -177,7 +178,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1029
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1029" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1030" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1030
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1030" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1031" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1031
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1031" class="line" lang="diff"> printf("\nEnter type of output file [B=blocks|F=fasta]: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1032" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1032
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1032" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outtype);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1033" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1033
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1033" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( outtype, MABLOCK_OUTTYPELEN, stdin );</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1034" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1034
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1034" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1035" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1035
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1035" class="line" lang="diff"> if (outtype[0] == 'F' || outtype[0] == 'f') ftype = 1;</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1036" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1036
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1036" class="line" lang="diff"> /* ------------4th arg = optional min trimming size--------------------*/</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1037
</td>
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<pre style="margin: 0;">+<span id="LC1037" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/makelogob.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1038" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1038
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<pre style="margin: 0;">+<span id="LC1038" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/makelogob.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1039
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<pre style="margin: 0;">+<span id="LC1039" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -797,7 +797,7 @@ waveparam **w;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1040" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1040
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<pre style="margin: 0;">+<span id="LC1040" class="line" lang="diff"> *w = NULL;</span>
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<td class="diff-line-num new new_line" data-linenumber="1041" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1041
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<pre style="margin: 0;">+<span id="LC1041" class="line" lang="diff"> return;</span>
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<td class="diff-line-num new new_line" data-linenumber="1042" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1042
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<pre style="margin: 0;">+<span id="LC1042" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1043" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1043
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<pre style="margin: 0;">+<span id="LC1043" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- *w = (waveparam *)Malloc(sizeof(waveparam));</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1044" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1044
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<pre style="margin: 0;">+<span id="LC1044" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *w = (waveparam *)malloc(sizeof(waveparam));</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1045" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1045
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<pre style="margin: 0;">+<span id="LC1045" class="line" lang="diff"> p = *w;</span>
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<td class="diff-line-num new new_line" data-linenumber="1046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1046
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<pre style="margin: 0;">+<span id="LC1046" class="line" lang="diff"> while (!BUFEOF(afile->f)) {</span>
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<td class="diff-line-num new new_line" data-linenumber="1047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1047
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<pre style="margin: 0;">+<span id="LC1047" class="line" lang="diff"> fscanf(afile->f, "%c%*[^\n]", &p->extreme);</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1048" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1048
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<pre style="margin: 0;">+<span id="LC1048" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -831,7 +831,7 @@ waveparam **w;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1049" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1049
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<pre style="margin: 0;">+<span id="LC1049" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1050" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1050
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<pre style="margin: 0;">+<span id="LC1050" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1051
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<pre style="margin: 0;">+<span id="LC1051" class="line" lang="diff"> if (!BUFEOF(afile->f)) {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1052" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1052
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<pre style="margin: 0;">+<span id="LC1052" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- p->next = (waveparam *)Malloc(sizeof(waveparam));</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1053" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1053
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<pre style="margin: 0;">+<span id="LC1053" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ p->next = (waveparam *)malloc(sizeof(waveparam));</span></span>
</pre>
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1054
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<pre style="margin: 0;">+<span id="LC1054" class="line" lang="diff"> p = p->next;</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1055
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<pre style="margin: 0;">+<span id="LC1055" class="line" lang="diff"> } else</span>
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<td class="diff-line-num new new_line" data-linenumber="1056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1056
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<pre style="margin: 0;">+<span id="LC1056" class="line" lang="diff"> p->next = NULL;</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1057
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<pre style="margin: 0;">+<span id="LC1057" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2007,7 +2007,7 @@ strings **thestrings;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1058
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<pre style="margin: 0;">+<span id="LC1058" class="line" lang="diff"> return;</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1059
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<pre style="margin: 0;">+<span id="LC1059" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1060
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<pre style="margin: 0;">+<span id="LC1060" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1061
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<pre style="margin: 0;">+<span id="LC1061" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- *thestrings = (strings *)Malloc(sizeof(strings));</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1062
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<pre style="margin: 0;">+<span id="LC1062" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *thestrings = (strings *)malloc(sizeof(strings));</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1063
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<pre style="margin: 0;">+<span id="LC1063" class="line" lang="diff"> stringspot = *thestrings;</span>
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1064
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<pre style="margin: 0;">+<span id="LC1064" class="line" lang="diff"> for (n = 1; n <= numberstrings; n++) {</span>
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1065
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<pre style="margin: 0;">+<span id="LC1065" class="line" lang="diff"> if (BUFEOF(theplace->f)) {</span>
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<td class="diff-line-num new new_line" data-linenumber="1066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1066
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<pre style="margin: 0;">+<span id="LC1066" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2023,7 +2023,7 @@ strings **thestrings;</span></span>
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1067
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<pre style="margin: 0;">+<span id="LC1067" class="line" lang="diff"> halt();</span>
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1068
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<pre style="margin: 0;">+<span id="LC1068" class="line" lang="diff"> }</span>
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1069
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<pre style="margin: 0;">+<span id="LC1069" class="line" lang="diff"> if (n < numberstrings) {</span>
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<td class="diff-line-num new new_line" data-linenumber="1070" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1070
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<pre style="margin: 0;">+<span id="LC1070" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- stringspot->next = (strings *)Malloc(sizeof(strings));</span></span>
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1071
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<pre style="margin: 0;">+<span id="LC1071" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ stringspot->next = (strings *)malloc(sizeof(strings));</span></span>
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1072
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<pre style="margin: 0;">+<span id="LC1072" class="line" lang="diff"> stringspot = stringspot->next;</span>
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1073
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<pre style="margin: 0;">+<span id="LC1073" class="line" lang="diff"> } else</span>
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1074
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<pre style="margin: 0;">+<span id="LC1074" class="line" lang="diff"> stringspot->next = NULL;</span>
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1075
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<pre style="margin: 0;">+<span id="LC1075" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/matrix_logob.c</span></span>
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1076
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<pre style="margin: 0;">+<span id="LC1076" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/matrix_logob.c</span></span>
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1077
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<pre style="margin: 0;">+<span id="LC1077" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -142,9 +142,10 @@ int main(argc, argv)</span></span>
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1078
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<pre style="margin: 0;">+<span id="LC1078" class="line" lang="diff"> int itemp, nblock, done, all;</span>
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1079
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<pre style="margin: 0;">+<span id="LC1079" class="line" lang="diff"> long bfp_pos;</span>
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1080
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<pre style="margin: 0;">+<span id="LC1080" class="line" lang="diff"> char bdbname[MAXNAME], suffix[MAXNAME], outname[MAXNAME] ;</span>
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1081
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<pre style="margin: 0;">+<span id="LC1081" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char blockAC[MAXNAME], blockID[MAXNAME], version[32], line[160] ;</span></span>
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1082
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<pre style="margin: 0;">+<span id="LC1082" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char blockAC[MAXNAME], blockID[MAXNAME], version[32];</span></span>
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1083
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<pre style="margin: 0;">+<span id="LC1083" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ const char line[160] ;</span></span>
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1084
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<pre style="margin: 0;">+<span id="LC1084" class="line" lang="diff"> char logodir[MAXNAME], suffix2[MAXNAME], blockAC2[MAXNAME];</span>
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1085
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<pre style="margin: 0;">+<span id="LC1085" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char symvec[MAXNAME], makelogop[MAXNAME], colors[MAXNAME];</span></span>
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1086
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<pre style="margin: 0;">+<span id="LC1086" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char symvec[MAXNAME], makelogop[MAXNAME], colors[MAXNAME+10];</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1087
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<pre style="margin: 0;">+<span id="LC1087" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1088" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1088
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<pre style="margin: 0;">+<span id="LC1088" class="line" lang="diff"> struct stat status ;</span>
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<td class="diff-line-num new new_line" data-linenumber="1089" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1089
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<pre style="margin: 0;">+<span id="LC1089" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="1090" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1090
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<pre style="margin: 0;">+<span id="LC1090" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -331,7 +332,7 @@ FILE **bfp ;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1091" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1091
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<pre style="margin: 0;">+<span id="LC1091" class="line" lang="diff"> else </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1092" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1092
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<pre style="margin: 0;">+<span id="LC1092" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1093" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1093
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<pre style="margin: 0;">+<span id="LC1093" class="line" lang="diff"> printf("\nEnter name of BLOCK or MATRIX file: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1094
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<pre style="margin: 0;">+<span id="LC1094" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1095" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1095
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<pre style="margin: 0;">+<span id="LC1095" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1096" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1096
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<pre style="margin: 0;">+<span id="LC1096" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1097
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<pre style="margin: 0;">+<span id="LC1097" class="line" lang="diff"> </span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1098
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<pre style="margin: 0;">+<span id="LC1098" class="line" lang="diff"> /* Read stdin if the filename starts with '-' */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1099
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<pre style="margin: 0;">+<span id="LC1099" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -347,7 +348,7 @@ FILE **bfp ;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1100
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<pre style="margin: 0;">+<span id="LC1100" class="line" lang="diff"> else /* get input file(s) interactively */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1101
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<pre style="margin: 0;">+<span id="LC1101" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1102
</td>
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<pre style="margin: 0;">+<span id="LC1102" class="line" lang="diff"> printf("\nEnter AC in %s or - to make logos for all: ", bdbname);</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1103
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<pre style="margin: 0;">+<span id="LC1103" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blockAC);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1104
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<pre style="margin: 0;">+<span id="LC1104" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blockAC, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1105
</td>
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<pre style="margin: 0;">+<span id="LC1105" class="line" lang="diff"> }</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1106
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1106" class="line" lang="diff"> </span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1107
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1107" class="line" lang="diff"> /* ------------3rd arg = file name suffix ------------------------------JGH*/</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1108
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1108" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -356,7 +357,7 @@ FILE **bfp ;</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1109
</td>
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<pre style="margin: 0;">+<span id="LC1109" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1110
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1110" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1111
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<pre style="margin: 0;">+<span id="LC1111" class="line" lang="diff"> printf("\nEnter file name suffix: ");</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1112
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1112" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(suffix);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1113
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(suffix, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1114
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<pre style="margin: 0;">+<span id="LC1114" class="line" lang="diff"> printf("Logos will be written to logo.%s\n", suffix);</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1115
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1115" class="line" lang="diff"> }</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1116
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1116" class="line" lang="diff"> </span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1117
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1117" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -588,7 +589,7 @@ char *outname;</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1118
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1118" class="line" lang="diff"> printf(" after viewing you can also choose to print,\n") ;</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1119
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1119" class="line" lang="diff"> printf(" P to print logo (%s %s).)\n", PSprint, outname) ;</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1120
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1120" class="line" lang="diff"> </span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1121
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1121" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ans) ;</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1122
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1122" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ans, 2, stdin) ;</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1123
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1123" class="line" lang="diff"> </span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1124
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1124" class="line" lang="diff"> switch (toupper(ans[0]))</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1125
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1125" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1126
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1126" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/narrow.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1127
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1127" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/narrow.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1128
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1128" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -93,7 +93,7 @@ char *argv[];</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1129
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1129" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1130
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1130" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1131
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1131" class="line" lang="diff"> printf("\nEnter type of input file (Block|Frequencies|Weights): ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1132
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1132" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1133
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1133" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, 80, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1134
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1134" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1135
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1135" class="line" lang="diff"> if (ctemp[0] == 'F' || ctemp[0] == 'f') type = 1; </span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
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<td class="diff-line-num new new_line" data-linenumber="1136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1136
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<pre style="margin: 0;">+<span id="LC1136" class="line" lang="diff"> else if (ctemp[0] == 'W' || ctemp[0] == 'w') type = 2; </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1137
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<pre style="margin: 0;">+<span id="LC1137" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -104,7 +104,7 @@ char *argv[];</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1138
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<pre style="margin: 0;">+<span id="LC1138" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="1139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1139
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<pre style="margin: 0;">+<span id="LC1139" class="line" lang="diff"> {</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1140
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<pre style="margin: 0;">+<span id="LC1140" class="line" lang="diff"> printf("\nEnter name of input file: ");</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1141
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<pre style="margin: 0;">+<span id="LC1141" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(chkname);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1142
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1142" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(chkname, 80, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1143
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<pre style="margin: 0;">+<span id="LC1143" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1144
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<pre style="margin: 0;">+<span id="LC1144" class="line" lang="diff"> if ( (chk=fopen(chkname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1145
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<pre style="margin: 0;">+<span id="LC1145" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1146
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<pre style="margin: 0;">+<span id="LC1146" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/oligo_melt.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1147
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<pre style="margin: 0;">+<span id="LC1147" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/oligo_melt.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1148
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<pre style="margin: 0;">+<span id="LC1148" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -75,7 +75,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1149
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<pre style="margin: 0;">+<span id="LC1149" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1150
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<pre style="margin: 0;">+<span id="LC1150" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1151
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<pre style="margin: 0;">+<span id="LC1151" class="line" lang="diff"> printf("Enter name of file containing oligos: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1152
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<pre style="margin: 0;">+<span id="LC1152" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(fname);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1153
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<pre style="margin: 0;">+<span id="LC1153" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(fname, 80, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1154
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<pre style="margin: 0;">+<span id="LC1154" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1155
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<pre style="margin: 0;">+<span id="LC1155" class="line" lang="diff"> if (!strlen(fname) ) inpf = stdin;</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1156
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<pre style="margin: 0;">+<span id="LC1156" class="line" lang="diff"> else if ((inpf=fopen(fname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1157
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<pre style="margin: 0;">+<span id="LC1157" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/papssm.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1158
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<pre style="margin: 0;">+<span id="LC1158" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/papssm.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1159
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<pre style="margin: 0;">+<span id="LC1159" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -163,7 +163,7 @@ struct steve {</span></span>
</pre>
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1160
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<pre style="margin: 0;">+<span id="LC1160" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="1161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1161
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<pre style="margin: 0;">+<span id="LC1161" class="line" lang="diff"> int read_cf();</span>
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<td class="diff-line-num new new_line" data-linenumber="1162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1162
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<pre style="margin: 0;">+<span id="LC1162" class="line" lang="diff"> int load_frequencies();</span>
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<td class="diff-line-num new new_line" data-linenumber="1163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1163
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<pre style="margin: 0;">+<span id="LC1163" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-double read_freq();</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1164
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<pre style="margin: 0;">+<span id="LC1164" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+static double read_freq();</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1165
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<pre style="margin: 0;">+<span id="LC1165" class="line" lang="diff"> void load_subst();</span>
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<td class="diff-line-num new new_line" data-linenumber="1166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1166
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<pre style="margin: 0;">+<span id="LC1166" class="line" lang="diff"> double nrgamma();</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1167
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<pre style="margin: 0;">+<span id="LC1167" class="line" lang="diff"> double addlogs();</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1168
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<pre style="margin: 0;">+<span id="LC1168" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -250,7 +250,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1169
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<pre style="margin: 0;">+<span id="LC1169" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1170
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<pre style="margin: 0;">+<span id="LC1170" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1171
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<pre style="margin: 0;">+<span id="LC1171" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1172
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<pre style="margin: 0;">+<span id="LC1172" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(cfname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1173
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<pre style="margin: 0;">+<span id="LC1173" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(cfname, FNAMELEN, stdin);</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1174
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<pre style="margin: 0;">+<span id="LC1174" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1175
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<pre style="margin: 0;">+<span id="LC1175" class="line" lang="diff"> if ( (cfp=fopen(cfname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1176
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<pre style="margin: 0;">+<span id="LC1176" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1177
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<pre style="margin: 0;">+<span id="LC1177" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/prints2blocks.c</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1178
</td>
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<pre style="margin: 0;">+<span id="LC1178" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/prints2blocks.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1179
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<pre style="margin: 0;">+<span id="LC1179" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -63,7 +63,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1180
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<pre style="margin: 0;">+<span id="LC1180" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1181
</td>
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<pre style="margin: 0;">+<span id="LC1181" class="line" lang="diff"> printf(</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1182
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<pre style="margin: 0;">+<span id="LC1182" class="line" lang="diff"> "\nEnter name of input file (Prints protein motifs database): ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1183
</td>
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<pre style="margin: 0;">+<span id="LC1183" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(inpfname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1184
</td>
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<pre style="margin: 0;">+<span id="LC1184" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(inpfname, MAXNAME, stdin);</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1185
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<pre style="margin: 0;">+<span id="LC1185" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1186
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<pre style="margin: 0;">+<span id="LC1186" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="1187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1187
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<pre style="margin: 0;">+<span id="LC1187" class="line" lang="diff"> if ( (inpf=fopen(inpfname, "r")) == NULL)</span>
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<td class="diff-line-num new new_line" data-linenumber="1188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1188
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<pre style="margin: 0;">+<span id="LC1188" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/protomat.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1189
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<pre style="margin: 0;">+<span id="LC1189" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/protomat.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1190
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<pre style="margin: 0;">+<span id="LC1190" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -438,7 +438,8 @@ char *line;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1191
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<pre style="margin: 0;">+<span id="LC1191" class="line" lang="diff"> char *dir_unix(line)</span>
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<td class="diff-line-num new new_line" data-linenumber="1192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1192
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<pre style="margin: 0;">+<span id="LC1192" class="line" lang="diff"> char *line;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1193
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<pre style="margin: 0;">+<span id="LC1193" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1194
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<pre style="margin: 0;">+<span id="LC1194" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char tname[FNAMELEN], mem[MAXLINE], pros[FNAMELEN], *ptr;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1195
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<pre style="margin: 0;">+<span id="LC1195" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char tname[FNAMELEN], mem[MAXLINE], *ptr;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1196
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<pre style="margin: 0;">+<span id="LC1196" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ static char pros[FNAMELEN];</span></span>
</pre>
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1197
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<pre style="margin: 0;">+<span id="LC1197" class="line" lang="diff"> int test;</span>
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1198
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<pre style="margin: 0;">+<span id="LC1198" class="line" lang="diff"> DIR *dp;</span>
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1199
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<pre style="margin: 0;">+<span id="LC1199" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1200
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<pre style="margin: 0;">+<span id="LC1200" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/protxblk.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1201
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<pre style="margin: 0;">+<span id="LC1201" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/protxblk.c</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1202
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<pre style="margin: 0;">+<span id="LC1202" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -37,7 +37,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1203
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<pre style="margin: 0;">+<span id="LC1203" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1204
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<pre style="margin: 0;">+<span id="LC1204" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1205
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<pre style="margin: 0;">+<span id="LC1205" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1206
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<pre style="margin: 0;">+<span id="LC1206" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1207
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<pre style="margin: 0;">+<span id="LC1207" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1208
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<pre style="margin: 0;">+<span id="LC1208" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1209
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<pre style="margin: 0;">+<span id="LC1209" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1210
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1210" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1211
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1211" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -50,7 +50,7 @@ int main(argc, argv)</span></span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1212
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1212" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1213
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1213" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1214
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1214" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1215
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1215" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1216
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1216" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1217
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1217" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1218
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1218" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1219
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1219" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1220
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1220" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/pssmBL.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1221
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1221" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/pssmBL.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1222
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1222" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -29,7 +29,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1223
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1223" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1224
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1224" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1225
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1225" class="line" lang="diff"> printf("\nEnter name of pssmdist.dat file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1226
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1226" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(pssmname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1227
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1227" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(pssmname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1228
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1228" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1229
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1229" class="line" lang="diff"> if ( (pfp=fopen(pssmname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1230
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1230" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1231
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1231" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -42,7 +42,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1232
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1232" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1233
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1233" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1234
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1234" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
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<td class="diff-line-num new new_line" data-linenumber="1235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1235
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<pre style="margin: 0;">+<span id="LC1235" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1236
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<pre style="margin: 0;">+<span id="LC1236" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1237
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<pre style="margin: 0;">+<span id="LC1237" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1238
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1238" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1239
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1239" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1240
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1240" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -55,7 +55,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1241
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1241" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1242
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1242" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1243
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1243" class="line" lang="diff"> printf("\nEnter name of new blocks database: ");</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1244
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1244" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1245
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1245" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1246
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<pre style="margin: 0;">+<span id="LC1246" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1247
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<pre style="margin: 0;">+<span id="LC1247" class="line" lang="diff"> if ( (ofp=fopen(conname, "a")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1248
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<pre style="margin: 0;">+<span id="LC1248" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1249
</td>
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<pre style="margin: 0;">+<span id="LC1249" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/pssmdist.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1250
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1250" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/pssmdist.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1251
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<pre style="margin: 0;">+<span id="LC1251" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -81,7 +81,7 @@ struct score_struct {</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1252
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<pre style="margin: 0;">+<span id="LC1252" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1253
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<pre style="margin: 0;">+<span id="LC1253" class="line" lang="diff"> int compute();</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1254
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<pre style="margin: 0;">+<span id="LC1254" class="line" lang="diff"> int load_freqs();</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1255
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<pre style="margin: 0;">+<span id="LC1255" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-double read_a_freq();</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1256
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<pre style="margin: 0;">+<span id="LC1256" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+static double read_a_freq();</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1257
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<pre style="margin: 0;">+<span id="LC1257" class="line" lang="diff"> void fix_freqs();</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1258
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<pre style="margin: 0;">+<span id="LC1258" class="line" lang="diff"> int count_tps();</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1259
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<pre style="margin: 0;">+<span id="LC1259" class="line" lang="diff"> </span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1260
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1260" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -113,7 +113,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1261
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1261" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1262
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1262" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1263
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1263" class="line" lang="diff"> printf("\nEnter name of matrix database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1264
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1264" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(mname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1265
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1265" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(mname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1266
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1266" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1267
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1267" class="line" lang="diff"> if ( (mfp=fopen(mname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1268
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1268" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1269
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1269" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -126,7 +126,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1270
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1270" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1271
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1271" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1272
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1272" class="line" lang="diff"> printf("\nEnter name of observed frequencies database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1273
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1273" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(oname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1274
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1274" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(oname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1275
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1275" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1276
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1276" class="line" lang="diff"> if ( (ofp=fopen(oname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1277
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1277" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1278
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1278" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -138,7 +138,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1279
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1279" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1280
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1280" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1281
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1281" class="line" lang="diff"> printf("\nEnter name of frequency file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1282
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1282" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(fname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1283
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1283" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(fname, MAXNAME,stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1284
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1284" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
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<td class="diff-line-num new new_line" data-linenumber="1285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1285
</td>
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<pre style="margin: 0;">+<span id="LC1285" class="line" lang="diff"> if ( (ffp=fopen(fname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1286
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<pre style="margin: 0;">+<span id="LC1286" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1287
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<pre style="margin: 0;">+<span id="LC1287" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -155,7 +155,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1288
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<pre style="margin: 0;">+<span id="LC1288" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1289
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<pre style="margin: 0;">+<span id="LC1289" class="line" lang="diff"> printf("\nEnter number of sequences in a typical search [%.0f]: ",</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1290
</td>
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<pre style="margin: 0;">+<span id="LC1290" class="line" lang="diff"> Search);</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1291
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1291" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1292
</td>
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<pre style="margin: 0;">+<span id="LC1292" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1293
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<pre style="margin: 0;">+<span id="LC1293" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1294
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<pre style="margin: 0;">+<span id="LC1294" class="line" lang="diff"> if (strlen(ctemp)) Search = atof(ctemp);</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1295
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1295" class="line" lang="diff"> /* ------------5th arg = #aas in a search--------------------*/</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1296
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<pre style="margin: 0;">+<span id="LC1296" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -166,7 +166,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1297
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<pre style="margin: 0;">+<span id="LC1297" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1298
</td>
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<pre style="margin: 0;">+<span id="LC1298" class="line" lang="diff"> printf("\nEnter number of amino acids in a typical database [%.0f]: ",</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1299
</td>
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<pre style="margin: 0;">+<span id="LC1299" class="line" lang="diff"> SearchAA);</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1300
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1300" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1301
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1301" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1302
</td>
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<pre style="margin: 0;">+<span id="LC1302" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1303
</td>
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<pre style="margin: 0;">+<span id="LC1303" class="line" lang="diff"> if (strlen(ctemp)) SearchAA = atof(ctemp);</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1304
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1304" class="line" lang="diff"> printf ("Assuming %.0f sequences, %.0f amino acids in a search\n",</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1305
</td>
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<pre style="margin: 0;">+<span id="LC1305" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/rank_matrix.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1306
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1306" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/rank_matrix.c</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1307
</td>
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<pre style="margin: 0;">+<span id="LC1307" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -39,7 +39,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1308
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<pre style="margin: 0;">+<span id="LC1308" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1309
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<pre style="margin: 0;">+<span id="LC1309" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1310
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1310" class="line" lang="diff"> printf("\nEnter name of scoring matrix: ");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1311
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1311" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(matname);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1312
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1312" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(matname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1313
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1313" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1314
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1314" class="line" lang="diff"> if ( (fmat=fopen(matname, "r")) == NULL)</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1315
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1315" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1316
</td>
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<pre style="margin: 0;">+<span id="LC1316" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/readchk.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1317
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1317" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/readchk.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1318
</td>
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<pre style="margin: 0;">+<span id="LC1318" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -20,7 +20,7 @@ char *argv[];</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1319
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<pre style="margin: 0;">+<span id="LC1319" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1320
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1320" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1321
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1321" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1322
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1322" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(chkname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1323
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1323" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(chkname, 80, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1324
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1324" class="line" lang="diff"> }</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1325
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1325" class="line" lang="diff"> if ( (chk=fopen(chkname, "r")) == NULL)</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1326
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1326" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1327
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1327" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/readmast.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1328
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1328" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/readmast.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1329
</td>
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<pre style="margin: 0;">+<span id="LC1329" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -26,7 +26,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1330
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1330" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1331
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1331" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1332" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1332
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1332" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1333" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1333
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1333" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(chkname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1334" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1334
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1334" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(chkname, 80, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1335
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<pre style="margin: 0;">+<span id="LC1335" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1336
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<pre style="margin: 0;">+<span id="LC1336" class="line" lang="diff"> if ( (chk=fopen(chkname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1337" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1337
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1337" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
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<td class="diff-line-num new new_line" data-linenumber="1338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1338
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<pre style="margin: 0;">+<span id="LC1338" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/retblock.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1339
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1339" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/retblock.c</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1340" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1340
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1340" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -50,7 +50,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1341" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1341
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<pre style="margin: 0;">+<span id="LC1341" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1342" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1342
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1342" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1343
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1343" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1344
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1344" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1345" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1345
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1345" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1346
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<pre style="margin: 0;">+<span id="LC1346" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1347
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<pre style="margin: 0;">+<span id="LC1347" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1348" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1348
</td>
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<pre style="margin: 0;">+<span id="LC1348" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1349
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<pre style="margin: 0;">+<span id="LC1349" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -66,7 +66,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1350" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1350
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<pre style="margin: 0;">+<span id="LC1350" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1351
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<pre style="margin: 0;">+<span id="LC1351" class="line" lang="diff"> strcpy(acname, "all");</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1352" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1352
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<pre style="margin: 0;">+<span id="LC1352" class="line" lang="diff"> printf("\nEnter AC of blocks to extract, or all [%s]: ", acname);</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1353
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<pre style="margin: 0;">+<span id="LC1353" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(acname);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1354" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1354
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<pre style="margin: 0;">+<span id="LC1354" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(acname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1355
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<pre style="margin: 0;">+<span id="LC1355" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1356
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<pre style="margin: 0;">+<span id="LC1356" class="line" lang="diff"> if (strcasecmp(acname, "all") == 0) allflag = TRUE;</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1357" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1357
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<pre style="margin: 0;">+<span id="LC1357" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1358
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<pre style="margin: 0;">+<span id="LC1358" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/sequences.c</span></span>
</pre>
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1359
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<pre style="margin: 0;">+<span id="LC1359" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/sequences.c</span></span>
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1360
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<pre style="margin: 0;">+<span id="LC1360" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -665,7 +665,7 @@ int read_sequence(seq, seq_type, start_p</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1361
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<pre style="margin: 0;">+<span id="LC1361" class="line" lang="diff"> stemp is a huge negative number ...</span>
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1362
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<pre style="margin: 0;">+<span id="LC1362" class="line" lang="diff"> */</span>
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1363
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<pre style="margin: 0;">+<span id="LC1363" class="line" lang="diff"> if (seq_type == AA_SEQ) {</span>
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1364
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<pre style="margin: 0;">+<span id="LC1364" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- while ( (c != NULL) && (c != '\0') && (num_seen < room_left) ) {</span></span>
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1365
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<pre style="margin: 0;">+<span id="LC1365" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ while ( (c != 0) && (c != '\0') && (num_seen < room_left) ) {</span></span>
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1366
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<pre style="margin: 0;">+<span id="LC1366" class="line" lang="diff"> stemp = aa_atob[c];</span>
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1367
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<pre style="margin: 0;">+<span id="LC1367" class="line" lang="diff"> if (stemp < 0 || stemp > AAID_MAX) stemp = AAID_MAX + 1;</span>
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1368
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<pre style="margin: 0;">+<span id="LC1368" class="line" lang="diff"> if ( stemp <= AAID_MAX ) {</span>
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1369
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<pre style="margin: 0;">+<span id="LC1369" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1201,7 +1201,7 @@ printf("\n");</span></span>
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1370
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<pre style="margin: 0;">+<span id="LC1370" class="line" lang="diff"> }</span>
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1371
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<pre style="margin: 0;">+<span id="LC1371" class="line" lang="diff"> } </span>
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1372
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<pre style="margin: 0;">+<span id="LC1372" class="line" lang="diff"> else {</span>
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1373
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<pre style="margin: 0;">+<span id="LC1373" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf("??) \t");</span></span>
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1374
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<pre style="margin: 0;">+<span id="LC1374" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("??"") \t");</span></span>
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1375
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<pre style="margin: 0;">+<span id="LC1375" class="line" lang="diff"> printf("\n");</span>
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1376
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<pre style="margin: 0;">+<span id="LC1376" class="line" lang="diff"> for(k=0; k<seq->length; k++) {</span>
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1377
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<pre style="margin: 0;">+<span id="LC1377" class="line" lang="diff"> printf("%c", aa_btoa[seq->sequence[k]]);</span>
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1378
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<pre style="margin: 0;">+<span id="LC1378" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/sortblk.c</span></span>
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1379
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<pre style="margin: 0;">+<span id="LC1379" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/sortblk.c</span></span>
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1380
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<pre style="margin: 0;">+<span id="LC1380" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -58,7 +58,7 @@ int main(argc, argv)</span></span>
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1381
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<pre style="margin: 0;">+<span id="LC1381" class="line" lang="diff"> else</span>
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1382
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<pre style="margin: 0;">+<span id="LC1382" class="line" lang="diff"> {</span>
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1383
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1383" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1384
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1384" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1385
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1385" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1386
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1386" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1387" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1387
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1387" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1388" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1388
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1388" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1389
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1389" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -71,7 +71,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1390
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1390" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1391
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1391" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1392
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1392" class="line" lang="diff"> printf("\nEnter name of new sorted blocks database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1393
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1393" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1394
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1394" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1395
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1395" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1396
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1396" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1397
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1397" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1398
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1398" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/translate.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1399
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1399" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/translate.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1400
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1400" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -29,7 +29,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1401
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1401" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1402
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1402" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1403
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1403" class="line" lang="diff"> printf("\nEnter name of sequence database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1404
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1404" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(sname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1405" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1405
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1405" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(sname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1406
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1406" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1407
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1407" class="line" lang="diff"> if ( (bfp=fopen(sname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1408
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1408" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1409
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1409" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -50,7 +50,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1410
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1410" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1411
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1411" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1412
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1412" class="line" lang="diff"> printf("\nEnter name of new translated sequence database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1413
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1413" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1414
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1414" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1415
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1415" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1416
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1416" class="line" lang="diff"> if ( (ofp=fopen(outname, "w")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1417
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1417" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1418
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1418" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -62,7 +62,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1419
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1419" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1420
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1420" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1421
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1421" class="line" lang="diff"> printf("\nEnter translation frame: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1422
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1422" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1423
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1423" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1424
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1424" class="line" lang="diff"> frame = atoi(ctemp);</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1425
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1425" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1426
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1426" class="line" lang="diff"> if (frame == 0 || frame < -3 || frame > 3) frame = 1;</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1427
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1427" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -74,7 +74,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1428
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1428" class="line" lang="diff"> for (code = 0; code < NUMBER_OF_GENETIC_CODES; code++)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1429
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1429" class="line" lang="diff"> printf("\n %d %s", code, gcodes[code].name);</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1430
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1430" class="line" lang="diff"> printf("\nEnter genetic code: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1431
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1431" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1432
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1432" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
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<td class="diff-line-num new new_line" data-linenumber="1433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1433
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<pre style="margin: 0;">+<span id="LC1433" class="line" lang="diff"> code = atoi(ctemp);</span>
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<td class="diff-line-num new new_line" data-linenumber="1434" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1434
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<pre style="margin: 0;">+<span id="LC1434" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1435
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<pre style="margin: 0;">+<span id="LC1435" class="line" lang="diff"> if (code < 0 || code > 8) code = 0;</span>
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<td class="diff-line-num new new_line" data-linenumber="1436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1436
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<pre style="margin: 0;">+<span id="LC1436" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/util.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1437
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<pre style="margin: 0;">+<span id="LC1437" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/util.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1438
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<pre style="margin: 0;">+<span id="LC1438" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,5 +1,6 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1439
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<pre style="margin: 0;">+<span id="LC1439" class="line" lang="diff"> #include <stdlib.h></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1440
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<pre style="margin: 0;">+<span id="LC1440" class="line" lang="diff"> #include <stdio.h></span>
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<td class="diff-line-num new new_line" data-linenumber="1441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1441
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<pre style="margin: 0;">+<span id="LC1441" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <string.h></span></span>
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<td class="diff-line-num new new_line" data-linenumber="1442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1442
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<pre style="margin: 0;">+<span id="LC1442" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1443
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<pre style="margin: 0;">+<span id="LC1443" class="line" lang="diff"> #define LF 10</span>
</pre>
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1444
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<pre style="margin: 0;">+<span id="LC1444" class="line" lang="diff"> #define CR 13</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1445
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<pre style="margin: 0;">+<span id="LC1445" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -92,7 +93,7 @@ int rind(char *s, char c) {</span></span>
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1446
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<pre style="margin: 0;">+<span id="LC1446" class="line" lang="diff"> return -1;</span>
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1447
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<pre style="margin: 0;">+<span id="LC1447" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1448
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<pre style="margin: 0;">+<span id="LC1448" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1449
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<pre style="margin: 0;">+<span id="LC1449" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-int getline(char *s, int n, FILE *f) {</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1450" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1450
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<pre style="margin: 0;">+<span id="LC1450" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int blimps_getline(char *s, int n, FILE *f) {</span></span>
</pre>
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1451
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<pre style="margin: 0;">+<span id="LC1451" class="line" lang="diff"> register int i=0;</span>
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1452
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<pre style="margin: 0;">+<span id="LC1452" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1453" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1453
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<pre style="margin: 0;">+<span id="LC1453" class="line" lang="diff"> while(1) {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1454
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<pre style="margin: 0;">+<span id="LC1454" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/include/protomat.h</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1455" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1455
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<pre style="margin: 0;">+<span id="LC1455" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/include/protomat.h</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1456" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1456
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<pre style="margin: 0;">+<span id="LC1456" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -58,7 +58,7 @@</span></span>
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1457
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<pre style="margin: 0;">+<span id="LC1457" class="line" lang="diff"> #define READ "r" /* Code to read disk files */</span>
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<td class="diff-line-num new new_line" data-linenumber="1458" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1458
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<pre style="margin: 0;">+<span id="LC1458" class="line" lang="diff"> #define SNAMELEN 20 /* Max length of sequence name */</span>
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<td class="diff-line-num new new_line" data-linenumber="1459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1459
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<pre style="margin: 0;">+<span id="LC1459" class="line" lang="diff"> #define IDLEN 12 /* Max length of db id */</span>
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<td class="diff-line-num new new_line" data-linenumber="1460" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1460
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<pre style="margin: 0;">+<span id="LC1460" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#define FNAMELEN 80 /* Max length of file name */</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1461" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1461
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<pre style="margin: 0;">+<span id="LC1461" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define FNAMELEN 160 /* Max length of file name */</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1462
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<pre style="margin: 0;">+<span id="LC1462" class="line" lang="diff"> #define MAXLINE 480 /* Max line length for ASCII file */</span>
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<td class="diff-line-num new new_line" data-linenumber="1463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1463
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<pre style="margin: 0;">+<span id="LC1463" class="line" lang="diff"> #define MATSIZE 21 /* Scoring matrix dimension */</span>
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<td class="diff-line-num new new_line" data-linenumber="1464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1464
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<pre style="margin: 0;">+<span id="LC1464" class="line" lang="diff"> #define HIGHPASS 4 /* Default high pass filter value */</span>
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<td class="diff-line-num new new_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1465
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<pre style="margin: 0;">+<span id="LC1465" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/protomat/blksort.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1466" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1466
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<pre style="margin: 0;">+<span id="LC1466" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/protomat/blksort.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1467" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1467
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<pre style="margin: 0;">+<span id="LC1467" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -211,7 +211,7 @@ char *argv[];</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1468" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1468
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<pre style="margin: 0;">+<span id="LC1468" class="line" lang="diff"> {</span>
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<td class="diff-line-num new new_line" data-linenumber="1469" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1469
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<pre style="margin: 0;">+<span id="LC1469" class="line" lang="diff"> printf("\nEnter number of hits to report or ");</span>
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<td class="diff-line-num new new_line" data-linenumber="1470" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1470
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<pre style="margin: 0;">+<span id="LC1470" class="line" lang="diff"> printf("blimps configuration file name [%d]: ", MaxHit);</span>
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<td class="diff-line-num new new_line" data-linenumber="1471" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1471
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<pre style="margin: 0;">+<span id="LC1471" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1472" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1472
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<pre style="margin: 0;">+<span id="LC1472" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, FNAMELEN, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1473" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1473
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<pre style="margin: 0;">+<span id="LC1473" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1474
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<pre style="margin: 0;">+<span id="LC1474" class="line" lang="diff"> if (!strlen(ctemp)) strcpy(ctemp, "0");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1475
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<pre style="margin: 0;">+<span id="LC1475" class="line" lang="diff"> for (i=0; i<strlen(ctemp); i++)</span>
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<td class="diff-line-num new new_line" data-linenumber="1476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1476
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<pre style="margin: 0;">+<span id="LC1476" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1874,10 +1874,10 @@ itemp = (int) strlen(block->name[s]);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1477
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<pre style="margin: 0;">+<span id="LC1477" class="line" lang="diff"> blkline[spot+4] = block->ac[7];</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1478
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<pre style="margin: 0;">+<span id="LC1478" class="line" lang="diff"> /* kr_itoa(block->offset[s], ctemp, 10); */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1479
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<pre style="margin: 0;">+<span id="LC1479" class="line" lang="diff"> /* offset starts at 1 in */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1480
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<pre style="margin: 0;">+<span id="LC1480" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(ctemp, "%d", block->offset[s]);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1481
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<pre style="margin: 0;">+<span id="LC1481" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sprintf(ctemp, "%ld", block->offset[s]);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1482
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<pre style="margin: 0;">+<span id="LC1482" class="line" lang="diff"> strncpy(datline+spot, ctemp, strlen(ctemp));</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1483" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1483
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<pre style="margin: 0;">+<span id="LC1483" class="line" lang="diff"> /* kr_itoa(block->offset[block->nseq-1]+1, ctemp,10); */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1484
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<pre style="margin: 0;">+<span id="LC1484" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(ctemp, "%d", block->offset[block->nseq-1]+1);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1485
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<pre style="margin: 0;">+<span id="LC1485" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sprintf(ctemp, "%ld", block->offset[block->nseq-1]+1);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1486" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1486
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<pre style="margin: 0;">+<span id="LC1486" class="line" lang="diff"> strncpy(homline+spot, ctemp, strlen(ctemp));</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1487
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<pre style="margin: 0;">+<span id="LC1487" class="line" lang="diff"> /* save location in case there are repeats */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1488" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1488
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<pre style="margin: 0;">+<span id="LC1488" class="line" lang="diff"> savspot = spot;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1489
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<pre style="margin: 0;">+<span id="LC1489" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1933,7 +1933,7 @@ itemp = (int) strlen(block->name[s]);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1490
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<pre style="margin: 0;">+<span id="LC1490" class="line" lang="diff"> for (i=0; i<MAXLINE; i++) repline[i] = ' ';</span>
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<td class="diff-line-num new new_line" data-linenumber="1491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1491
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<pre style="margin: 0;">+<span id="LC1491" class="line" lang="diff"> repspot = savspot;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1492
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<pre style="margin: 0;">+<span id="LC1492" class="line" lang="diff"> /* kr_itoa(results[t].offset+1, ctemp,10); */</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1493
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<pre style="margin: 0;">+<span id="LC1493" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(ctemp, "%d", results[t].offset+1);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1494
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<pre style="margin: 0;">+<span id="LC1494" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sprintf(ctemp, "%ld", results[t].offset+1);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1495
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<pre style="margin: 0;">+<span id="LC1495" class="line" lang="diff"> strncpy(repline+repspot, ctemp, strlen(ctemp));</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1496
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<pre style="margin: 0;">+<span id="LC1496" class="line" lang="diff"> repspot += 8;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1497
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<pre style="margin: 0;">+<span id="LC1497" class="line" lang="diff"> strcpy(repline+repspot, results[t].aa);</span>
</pre>
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1498
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<pre style="margin: 0;">+<span id="LC1498" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/protomat/getblock.c</span></span>
</pre>
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1499
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<pre style="margin: 0;">+<span id="LC1499" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/protomat/getblock.c</span></span>
</pre>
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1500
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<pre style="margin: 0;">+<span id="LC1500" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -94,7 +94,7 @@ char *argv[];</span></span>
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1501
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<pre style="margin: 0;">+<span id="LC1501" class="line" lang="diff"> while(strlen(BlockFam) < MINAC)</span>
</pre>
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1502
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<pre style="margin: 0;">+<span id="LC1502" class="line" lang="diff"> {</span>
</pre>
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1503
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<pre style="margin: 0;">+<span id="LC1503" class="line" lang="diff"> printf("\nEnter Block accession number: ");</span>
</pre>
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1504
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<pre style="margin: 0;">+<span id="LC1504" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(BlockFam);</span></span>
</pre>
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1505
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<pre style="margin: 0;">+<span id="LC1505" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(BlockFam, FNAMELEN, stdin);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1506
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<pre style="margin: 0;">+<span id="LC1506" class="line" lang="diff"> }</span>
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1507
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<pre style="margin: 0;">+<span id="LC1507" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1508
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<pre style="margin: 0;">+<span id="LC1508" class="line" lang="diff"> /* Chop off any A-Z block designator at the end */</span>
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1509
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<pre style="margin: 0;">+<span id="LC1509" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/protomat/motifj.h</span></span>
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1510
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<pre style="margin: 0;">+<span id="LC1510" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/protomat/motifj.h</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1511
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<pre style="margin: 0;">+<span id="LC1511" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -67,7 +67,7 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1512
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<pre style="margin: 0;">+<span id="LC1512" class="line" lang="diff"> #define IDLEN 12 /* Max length of db id */</span>
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<td class="diff-line-num new new_line" data-linenumber="1513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1513" class="line" lang="diff"> #define MINAC 7 /* Min AC length */</span>
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<td class="diff-line-num new new_line" data-linenumber="1514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1514
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<pre style="margin: 0;">+<span id="LC1514" class="line" lang="diff"> #define MAXAC 10 /* Max AC length */</span>
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<td class="diff-line-num new new_line" data-linenumber="1515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1515
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<pre style="margin: 0;">+<span id="LC1515" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#define FNAMELEN 80 /* Max length of file name */</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1516
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<pre style="margin: 0;">+<span id="LC1516" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define FNAMELEN 160 /* Max length of file name */</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1517
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<pre style="margin: 0;">+<span id="LC1517" class="line" lang="diff"> #define MAXLINE 480 /* Max line length for ASCII file */</span>
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<td class="diff-line-num new new_line" data-linenumber="1518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1518
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<pre style="margin: 0;">+<span id="LC1518" class="line" lang="diff"> #define MATSIZE 21 /* Scoring matrix dimension */</span>
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<td class="diff-line-num new new_line" data-linenumber="1519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1519
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<pre style="margin: 0;">+<span id="LC1519" class="line" lang="diff"> #define HIGHPASS 4 /* Default high pass filter value */</span>
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<td class="diff-line-num new new_line" data-linenumber="1520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1520
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<pre style="margin: 0;">+<span id="LC1520" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/protomat/motmisc.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1521
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<pre style="margin: 0;">+<span id="LC1521" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/protomat/motmisc.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1522
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<pre style="margin: 0;">+<span id="LC1522" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -33,27 +33,27 @@ struct db_id *check_entry();</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1523
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<pre style="margin: 0;">+<span id="LC1523" class="line" lang="diff"> non-negative */</span>
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1524
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<pre style="margin: 0;">+<span id="LC1524" class="line" lang="diff"> int bl60_highpass = 8;</span>
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<td class="diff-line-num new new_line" data-linenumber="1525" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1525
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<pre style="margin: 0;">+<span id="LC1525" class="line" lang="diff"> char bl60_matrix[21][21]={</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1526
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<pre style="margin: 0;">+<span id="LC1526" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-12, 7, 7, 6, 7, 7, 7, 8, 7, 7, 7, 7, 7, 6, 8, 9, 8, 5, 6, 8, 8, /*A*/</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1527
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<pre style="margin: 0;">+<span id="LC1527" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7,13, 8, 7, 5, 9, 8, 6, 8, 5, 6,10, 7, 6, 6, 7, 7, 6, 6, 6, 8, /*R*/</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1528
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<pre style="margin: 0;">+<span id="LC1528" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 8,14, 9, 6, 8, 8, 8, 8, 5, 5, 8, 6, 5, 6, 9, 8, 6, 6, 5, 8, /*N*/</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1529
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<pre style="margin: 0;">+<span id="LC1529" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 6, 7, 9,14, 4, 8, 9, 7, 7, 5, 5, 7, 5, 5, 6, 8, 7, 4, 6, 5, 8, /*D*/</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1530
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<pre style="margin: 0;">+<span id="LC1530" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 5, 6, 4,17, 6, 5, 6, 5, 7, 7, 5, 6, 6, 6, 7, 7, 5, 5, 7, 8, /*C*/</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1531
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<pre style="margin: 0;">+<span id="LC1531" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 9, 8, 8, 6,13,10, 6, 9, 6, 6, 9, 8, 5, 7, 8, 7, 6, 6, 6, 8, /*Q*/</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1532
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<pre style="margin: 0;">+<span id="LC1532" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 8, 8, 9, 5,10,13, 6, 8, 5, 6, 9, 6, 5, 7, 8, 7, 6, 6, 6, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1533
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<pre style="margin: 0;">+<span id="LC1533" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 8, 6, 8, 7, 6, 6, 6,14, 6, 5, 5, 7, 5, 5, 6, 8, 7, 6, 5, 5, 8,</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1534
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<pre style="margin: 0;">+<span id="LC1534" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 8, 8, 7, 5, 9, 8, 6,15, 5, 5, 7, 6, 7, 6, 7, 6, 6, 9, 5, 8,</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1535
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<pre style="margin: 0;">+<span id="LC1535" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 5, 5, 5, 7, 6, 5, 5, 5,12,10, 6, 9, 8, 5, 6, 7, 6, 7,11, 8,</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1536
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<pre style="margin: 0;">+<span id="LC1536" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 6, 5, 5, 7, 6, 6, 5, 5,10,12, 6,10, 8, 6, 6, 7, 6, 7, 9, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1537
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<pre style="margin: 0;">+<span id="LC1537" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7,10, 8, 7, 5, 9, 9, 7, 7, 6, 6,12, 7, 5, 7, 8, 7, 5, 6, 6, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1538" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1538
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<pre style="margin: 0;">+<span id="LC1538" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 7, 7, 6, 5, 6, 8, 6, 5, 6, 9,10, 7,14, 8, 6, 6, 7, 6, 7, 9, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1539
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<pre style="margin: 0;">+<span id="LC1539" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 6, 6, 5, 5, 6, 5, 5, 5, 7, 8, 8, 5, 8,14, 5, 6, 6, 9,11, 7, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1540" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1540
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<pre style="margin: 0;">+<span id="LC1540" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 8, 6, 6, 6, 6, 7, 7, 6, 6, 5, 6, 7, 6, 5,15, 7, 7, 5, 6, 6, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1541" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1541
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<pre style="margin: 0;">+<span id="LC1541" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 9, 7, 9, 8, 7, 8, 8, 8, 7, 6, 6, 8, 6, 6, 7,12, 9, 6, 6, 6, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1542" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1542
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<pre style="margin: 0;">+<span id="LC1542" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 8, 7, 8, 7, 7, 7, 7, 7, 6, 7, 7, 7, 7, 6, 7, 9,12, 6, 6, 8, 8,</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1543" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1543
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<pre style="margin: 0;">+<span id="LC1543" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 5, 6, 6, 4, 5, 6, 6, 6, 6, 6, 6, 5, 6, 9, 5, 6, 6,18,10, 6, 8,</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1544
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<pre style="margin: 0;">+<span id="LC1544" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 6, 6, 6, 6, 5, 6, 6, 5, 9, 7, 7, 6, 7,11, 6, 6, 6,10,15, 7, 8,</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1545" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1545
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<pre style="margin: 0;">+<span id="LC1545" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 8, 6, 5, 5, 7, 6, 6, 5, 5,11, 9, 6, 9, 7, 6, 6, 8, 6, 7,12, 8,</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1546" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1546
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<pre style="margin: 0;">+<span id="LC1546" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 0 /* X */</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1547
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<pre style="margin: 0;">+<span id="LC1547" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ {12, 7, 7, 6, 7, 7, 7, 8, 7, 7, 7, 7, 7, 6, 8, 9, 8, 5, 6, 8, 8}, /*A*/</span></span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1548" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1548
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1548" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7,13, 8, 7, 5, 9, 8, 6, 8, 5, 6,10, 7, 6, 6, 7, 7, 6, 6, 6, 8}, /*R*/</span></span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1549" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1549
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1549" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 8,14, 9, 6, 8, 8, 8, 8, 5, 5, 8, 6, 5, 6, 9, 8, 6, 6, 5, 8}, /*N*/</span></span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1550" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1550
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1550" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 6, 7, 9,14, 4, 8, 9, 7, 7, 5, 5, 7, 5, 5, 6, 8, 7, 4, 6, 5, 8}, /*D*/</span></span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1551
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<pre style="margin: 0;">+<span id="LC1551" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 5, 6, 4,17, 6, 5, 6, 5, 7, 7, 5, 6, 6, 6, 7, 7, 5, 5, 7, 8}, /*C*/</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1552" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1552
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<pre style="margin: 0;">+<span id="LC1552" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 9, 8, 8, 6,13,10, 6, 9, 6, 6, 9, 8, 5, 7, 8, 7, 6, 6, 6, 8}, /*Q*/</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1553" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1553
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<pre style="margin: 0;">+<span id="LC1553" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 8, 8, 9, 5,10,13, 6, 8, 5, 6, 9, 6, 5, 7, 8, 7, 6, 6, 6, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1554" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1554
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<pre style="margin: 0;">+<span id="LC1554" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 8, 6, 8, 7, 6, 6, 6,14, 6, 5, 5, 7, 5, 5, 6, 8, 7, 6, 5, 5, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1555" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1555
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<pre style="margin: 0;">+<span id="LC1555" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 8, 8, 7, 5, 9, 8, 6,15, 5, 5, 7, 6, 7, 6, 7, 6, 6, 9, 5, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1556
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<pre style="margin: 0;">+<span id="LC1556" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 5, 5, 5, 7, 6, 5, 5, 5,12,10, 6, 9, 8, 5, 6, 7, 6, 7,11, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1557" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1557
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<pre style="margin: 0;">+<span id="LC1557" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 6, 5, 5, 7, 6, 6, 5, 5,10,12, 6,10, 8, 6, 6, 7, 6, 7, 9, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1558" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1558
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<pre style="margin: 0;">+<span id="LC1558" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7,10, 8, 7, 5, 9, 9, 7, 7, 6, 6,12, 7, 5, 7, 8, 7, 5, 6, 6, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1559
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<pre style="margin: 0;">+<span id="LC1559" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 7, 7, 6, 5, 6, 8, 6, 5, 6, 9,10, 7,14, 8, 6, 6, 7, 6, 7, 9, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1560
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<pre style="margin: 0;">+<span id="LC1560" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 6, 6, 5, 5, 6, 5, 5, 5, 7, 8, 8, 5, 8,14, 5, 6, 6, 9,11, 7, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1561
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<pre style="margin: 0;">+<span id="LC1561" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 8, 6, 6, 6, 6, 7, 7, 6, 6, 5, 6, 7, 6, 5,15, 7, 7, 5, 6, 6, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1562" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1562
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<pre style="margin: 0;">+<span id="LC1562" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 9, 7, 9, 8, 7, 8, 8, 8, 7, 6, 6, 8, 6, 6, 7,12, 9, 6, 6, 6, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1563" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1563
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<pre style="margin: 0;">+<span id="LC1563" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 8, 7, 8, 7, 7, 7, 7, 7, 6, 7, 7, 7, 7, 6, 7, 9,12, 6, 6, 8, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1564
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<pre style="margin: 0;">+<span id="LC1564" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 5, 6, 6, 4, 5, 6, 6, 6, 6, 6, 6, 5, 6, 9, 5, 6, 6,18,10, 6, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1565
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<pre style="margin: 0;">+<span id="LC1565" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 6, 6, 6, 6, 5, 6, 6, 5, 9, 7, 7, 6, 7,11, 6, 6, 6,10,15, 7, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1566
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<pre style="margin: 0;">+<span id="LC1566" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 8, 6, 5, 5, 7, 6, 6, 5, 5,11, 9, 6, 9, 7, 6, 6, 8, 6, 7,12, 8},</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1567
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<pre style="margin: 0;">+<span id="LC1567" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 0} /* X */</span></span>
</pre>
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1568
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<pre style="margin: 0;">+<span id="LC1568" class="line" lang="diff"> };</span>
</pre>
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1569
</td>
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<pre style="margin: 0;">+<span id="LC1569" class="line" lang="diff"> </span>
</pre>
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1570
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<pre style="margin: 0;">+<span id="LC1570" class="line" lang="diff"> /* BLOSUM62 matrix with each cell offset by 4 to make all scores</span>
</pre>
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1571
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<pre style="margin: 0;">+<span id="LC1571" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -61,27 +61,27 @@ char bl60_matrix[21][21]={</span></span>
</pre>
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1572
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<pre style="margin: 0;">+<span id="LC1572" class="line" lang="diff"> int bl62_highpass = 4;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1573" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1573
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<pre style="margin: 0;">+<span id="LC1573" class="line" lang="diff"> /* A R N D C Q E G H I L K M F P S T W Y V X */</span>
</pre>
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1574
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<pre style="margin: 0;">+<span id="LC1574" class="line" lang="diff"> char bl62_matrix[21][21]={</span>
</pre>
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1575
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<pre style="margin: 0;">+<span id="LC1575" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 8, 3, 2, 2, 4, 3, 3, 4, 2, 3, 3, 3, 3, 2, 3, 5, 4, 1, 2, 4, 0, </span></span>
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1576
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<pre style="margin: 0;">+<span id="LC1576" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 9, 4, 2, 1, 5, 4, 2, 4, 1, 2, 6, 3, 1, 2, 3, 3, 1, 2, 1, 0, </span></span>
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1577
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<pre style="margin: 0;">+<span id="LC1577" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 2, 4,10, 5, 1, 4, 4, 4, 5, 1, 1, 4, 2, 1, 2, 5, 4, 0, 2, 1, 0, </span></span>
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1578
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<pre style="margin: 0;">+<span id="LC1578" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 2, 2, 5,10, 1, 4, 6, 3, 3, 1, 0, 3, 1, 1, 3, 4, 3, 0, 1, 1, 0, </span></span>
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1579
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<pre style="margin: 0;">+<span id="LC1579" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 4, 1, 1, 1,13, 1, 0, 1, 1, 3, 3, 1, 3, 2, 1, 3, 3, 2, 2, 3, 0, </span></span>
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1580
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<pre style="margin: 0;">+<span id="LC1580" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 5, 4, 4, 1, 9, 6, 2, 4, 1, 2, 5, 4, 1, 3, 4, 3, 2, 3, 2, 0, </span></span>
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1581
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<pre style="margin: 0;">+<span id="LC1581" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 4, 4, 6, 0, 6, 9, 2, 4, 1, 1, 5, 2, 1, 3, 4, 3, 1, 2, 2, 0, </span></span>
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1582
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<pre style="margin: 0;">+<span id="LC1582" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 4, 2, 4, 3, 1, 2, 2,10, 2, 0, 0, 2, 1, 1, 2, 4, 2, 2, 1, 1, 0, </span></span>
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1583
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<pre style="margin: 0;">+<span id="LC1583" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 2, 4, 5, 3, 1, 4, 4, 2,12, 1, 1, 3, 2, 3, 2, 3, 2, 2, 6, 1, 0, </span></span>
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1584
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<pre style="margin: 0;">+<span id="LC1584" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 1, 1, 1, 3, 1, 1, 0, 1, 8, 6, 1, 5, 4, 1, 2, 3, 1, 3, 7, 0, </span></span>
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<pre style="margin: 0;">+<span id="LC1585" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 2, 1, 0, 3, 2, 1, 0, 1, 6, 8, 2, 6, 4, 1, 2, 3, 2, 3, 5, 0, </span></span>
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<pre style="margin: 0;">+<span id="LC1586" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 6, 4, 3, 1, 5, 5, 2, 3, 1, 2, 9, 3, 1, 3, 4, 3, 1, 2, 2, 0, </span></span>
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1587
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<pre style="margin: 0;">+<span id="LC1587" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 3, 2, 1, 3, 4, 2, 1, 2, 5, 6, 3, 9, 4, 2, 3, 3, 3, 3, 5, 0, </span></span>
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<pre style="margin: 0;">+<span id="LC1588" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 2, 1, 1, 1, 2, 1, 1, 1, 3, 4, 4, 1, 4,10, 0, 2, 2, 5, 7, 3, 0, </span></span>
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1589
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<pre style="margin: 0;">+<span id="LC1589" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 3, 2, 2, 3, 1, 3, 3, 2, 2, 1, 1, 3, 2, 0,11, 3, 3, 0, 1, 2, 0, </span></span>
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1590
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<pre style="margin: 0;">+<span id="LC1590" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 5, 3, 5, 4, 3, 4, 4, 4, 3, 2, 2, 4, 3, 2, 3, 8, 5, 1, 2, 2, 0, </span></span>
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1591
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<pre style="margin: 0;">+<span id="LC1591" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 4, 3, 4, 3, 3, 3, 3, 2, 2, 3, 3, 3, 3, 2, 3, 5, 9, 2, 2, 4, 0, </span></span>
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<pre style="margin: 0;">+<span id="LC1592" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 1, 1, 0, 0, 2, 2, 1, 2, 2, 1, 2, 1, 3, 5, 0, 1, 2,15, 6, 1, 0, </span></span>
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<pre style="margin: 0;">+<span id="LC1593" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 2, 2, 2, 1, 2, 3, 2, 1, 6, 3, 3, 2, 3, 7, 1, 2, 2, 6,11, 3, 0, </span></span>
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<pre style="margin: 0;">+<span id="LC1594" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 4, 1, 1, 1, 3, 2, 2, 1, 1, 7, 5, 2, 5, 3, 2, 2, 4, 1, 3, 8, 0, </span></span>
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<pre style="margin: 0;">+<span id="LC1595" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1596" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1596
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1596" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 8, 3, 2, 2, 4, 3, 3, 4, 2, 3, 3, 3, 3, 2, 3, 5, 4, 1, 2, 4, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1597
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1597" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 9, 4, 2, 1, 5, 4, 2, 4, 1, 2, 6, 3, 1, 2, 3, 3, 1, 2, 1, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1598
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1598" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 2, 4,10, 5, 1, 4, 4, 4, 5, 1, 1, 4, 2, 1, 2, 5, 4, 0, 2, 1, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1599" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1599
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1599" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 2, 2, 5,10, 1, 4, 6, 3, 3, 1, 0, 3, 1, 1, 3, 4, 3, 0, 1, 1, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1600" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1600
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1600" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 4, 1, 1, 1,13, 1, 0, 1, 1, 3, 3, 1, 3, 2, 1, 3, 3, 2, 2, 3, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1601" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1601
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1601" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 5, 4, 4, 1, 9, 6, 2, 4, 1, 2, 5, 4, 1, 3, 4, 3, 2, 3, 2, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1602" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1602
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1602" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 4, 4, 6, 0, 6, 9, 2, 4, 1, 1, 5, 2, 1, 3, 4, 3, 1, 2, 2, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1603" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1603
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1603" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 4, 2, 4, 3, 1, 2, 2,10, 2, 0, 0, 2, 1, 1, 2, 4, 2, 2, 1, 1, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1604
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1604" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 2, 4, 5, 3, 1, 4, 4, 2,12, 1, 1, 3, 2, 3, 2, 3, 2, 2, 6, 1, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1605" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1605
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1605" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 1, 1, 1, 3, 1, 1, 0, 1, 8, 6, 1, 5, 4, 1, 2, 3, 1, 3, 7, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1606" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1606
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1606" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 2, 1, 0, 3, 2, 1, 0, 1, 6, 8, 2, 6, 4, 1, 2, 3, 2, 3, 5, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1607" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1607
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1607" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 6, 4, 3, 1, 5, 5, 2, 3, 1, 2, 9, 3, 1, 3, 4, 3, 1, 2, 2, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1608" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1608
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1608" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 3, 2, 1, 3, 4, 2, 1, 2, 5, 6, 3, 9, 4, 2, 3, 3, 3, 3, 5, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1609
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1609" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 2, 1, 1, 1, 2, 1, 1, 1, 3, 4, 4, 1, 4,10, 0, 2, 2, 5, 7, 3, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1610" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1610
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1610" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 3, 2, 2, 3, 1, 3, 3, 2, 2, 1, 1, 3, 2, 0,11, 3, 3, 0, 1, 2, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1611" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1611
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1611" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 5, 3, 5, 4, 3, 4, 4, 4, 3, 2, 2, 4, 3, 2, 3, 8, 5, 1, 2, 2, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1612" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1612
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1612" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 4, 3, 4, 3, 3, 3, 3, 2, 2, 3, 3, 3, 3, 2, 3, 5, 9, 2, 2, 4, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1613" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1613
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1613" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 1, 1, 0, 0, 2, 2, 1, 2, 2, 1, 2, 1, 3, 5, 0, 1, 2,15, 6, 1, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1614" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1614
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1614" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 2, 2, 2, 1, 2, 3, 2, 1, 6, 3, 3, 2, 3, 7, 1, 2, 2, 6,11, 3, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1615" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1615
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1615" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 4, 1, 1, 1, 3, 2, 2, 1, 1, 7, 5, 2, 5, 3, 2, 2, 4, 1, 3, 8, 0}, </span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1616" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1616
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1616" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ { 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0} </span></span>
</pre>
</td>
</tr>
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<td class="diff-line-num new new_line" data-linenumber="1617" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1617
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<pre style="margin: 0;">+<span id="LC1617" class="line" lang="diff"> };</span>
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<td class="diff-line-num new new_line" data-linenumber="1618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1618
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<pre style="margin: 0;">+<span id="LC1618" class="line" lang="diff"> /*=======================================================================*/</span>
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<td class="diff-line-num new new_line" data-linenumber="1619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1619
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<pre style="margin: 0;">+<span id="LC1619" class="line" lang="diff"> /* Number to amino acid */</span>
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<td class="diff-line-num new new_line" data-linenumber="1620" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1620
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<pre style="margin: 0;">+<span id="LC1620" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/version.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1621
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<pre style="margin: 0;">+<span id="LC1621" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/version.c</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1622" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1622
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<pre style="margin: 0;">+<span id="LC1622" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -180,8 +180,8 @@ void print_version(fp)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1623" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1623
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<pre style="margin: 0;">+<span id="LC1623" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1624" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1624
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<pre style="margin: 0;">+<span id="LC1624" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1625" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1625
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<pre style="margin: 0;">+<span id="LC1625" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="1626" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1626
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<pre style="margin: 0;">+<span id="LC1626" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fprintf(fp, TitleString);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1627" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1627
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<pre style="margin: 0;">+<span id="LC1627" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fprintf(fp, CopyrightString);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1628
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<pre style="margin: 0;">+<span id="LC1628" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf(fp, "%s", TitleString);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1629" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1629
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<pre style="margin: 0;">+<span id="LC1629" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf(fp, "%s", CopyrightString);</span></span>
</pre>
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1630
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<pre style="margin: 0;">+<span id="LC1630" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1631" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1631
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<pre style="margin: 0;">+<span id="LC1631" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1632" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1632
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<pre style="margin: 0;">+<span id="LC1632" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1633" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1633
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<pre style="margin: 0;">+<span id="LC1633" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/include/errors.h</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1634" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1634
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<pre style="margin: 0;">+<span id="LC1634" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/include/errors.h</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1635" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1635
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<pre style="margin: 0;">+<span id="LC1635" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -28,7 +28,7 @@</span></span>
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1636
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<pre style="margin: 0;">+<span id="LC1636" class="line" lang="diff"> </span>
</pre>
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1637
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<pre style="margin: 0;">+<span id="LC1637" class="line" lang="diff"> </span>
</pre>
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1638
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<pre style="margin: 0;">+<span id="LC1638" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1639" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1639
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<pre style="margin: 0;">+<span id="LC1639" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-extern char ErrorBuffer[LARGE_BUFF_LENGTH];</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1640
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<pre style="margin: 0;">+<span id="LC1640" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+extern char ErrorBuffer[LARGE_BUFF_LENGTH+SMALL_BUFF_LENGTH];</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1641" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1641
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<pre style="margin: 0;">+<span id="LC1641" class="line" lang="diff"> extern int ErrorLevelReport;</span>
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1642
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<pre style="margin: 0;">+<span id="LC1642" class="line" lang="diff"> </span>
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1643
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<pre style="margin: 0;">+<span id="LC1643" class="line" lang="diff"> </span>
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1644
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<pre style="margin: 0;">+<span id="LC1644" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/errors.c</span></span>
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1645
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<pre style="margin: 0;">+<span id="LC1645" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/errors.c</span></span>
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1646
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<pre style="margin: 0;">+<span id="LC1646" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -15,7 +15,7 @@</span></span>
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1647
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<pre style="margin: 0;">+<span id="LC1647" class="line" lang="diff"> * Exported variables and data structures</span>
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1648
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<pre style="margin: 0;">+<span id="LC1648" class="line" lang="diff"> */</span>
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1649
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<pre style="margin: 0;">+<span id="LC1649" class="line" lang="diff"> </span>
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1650
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<pre style="margin: 0;">+<span id="LC1650" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-char ErrorBuffer[LARGE_BUFF_LENGTH];</span></span>
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1651
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<pre style="margin: 0;">+<span id="LC1651" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+char ErrorBuffer[LARGE_BUFF_LENGTH+SMALL_BUFF_LENGTH];</span></span>
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1652
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<pre style="margin: 0;">+<span id="LC1652" class="line" lang="diff"> int ErrorLevelReport;</span>
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1653
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<pre style="margin: 0;">+<span id="LC1653" class="line" lang="diff"> </span>
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1654
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<pre style="margin: 0;">+<span id="LC1654" class="line" lang="diff"> </span>
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1655
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<pre style="margin: 0;">+<span id="LC1655" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -113,7 +113,7 @@ void ErrorReport(err_level)</span></span>
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1656
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<pre style="margin: 0;">+<span id="LC1656" class="line" lang="diff"> exit(FATAL_ERR_LVL); /* closes all the open files */</span>
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1657
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<pre style="margin: 0;">+<span id="LC1657" class="line" lang="diff"> }</span>
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1658
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<pre style="margin: 0;">+<span id="LC1658" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC1659" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ErrorBuffer[0] = '\0'; /* clear the string incase the caller does */</span></span>
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1660
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<pre style="margin: 0;">+<span id="LC1660" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ((char *)ErrorBuffer)[0] = '\0'; /* clear the string incase the caller does */</span></span>
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1661
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<pre style="margin: 0;">+<span id="LC1661" class="line" lang="diff"> /* not setup ErrorBuffer correctly for the */</span>
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<pre style="margin: 0;">+<span id="LC1662" class="line" lang="diff"> /* next call */</span>
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1663
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<pre style="margin: 0;">+<span id="LC1663" class="line" lang="diff"> if (dont_skip_error_file_report) {</span>
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1664
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<pre style="margin: 0;">+<span id="LC1664" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/protomat/blosum.c</span></span>
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1665
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<pre style="margin: 0;">+<span id="LC1665" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/protomat/blosum.c</span></span>
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<pre style="margin: 0;">+<span id="LC1666" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -125,7 +125,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1667" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1667
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<pre style="margin: 0;">+<span id="LC1667" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1668" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1668
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<pre style="margin: 0;">+<span id="LC1668" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1669" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1669
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1669" class="line" lang="diff"> printf("Enter name of blocks database:\n");</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1670
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1670" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(datfile);</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1671" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1671
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1671" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(datfile, FNAMELEN, stdin);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1672
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<pre style="margin: 0;">+<span id="LC1672" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1673
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1673" class="line" lang="diff"> if ( (fdat=fopen(datfile, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1674" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1674
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1674" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1675" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1675
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<pre style="margin: 0;">+<span id="LC1675" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -139,7 +139,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1676" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1676
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<pre style="margin: 0;">+<span id="LC1676" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1677" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1677
</td>
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<pre style="margin: 0;">+<span id="LC1677" class="line" lang="diff"> MinStr = MINSTR;</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1678" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1678
</td>
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<pre style="margin: 0;">+<span id="LC1678" class="line" lang="diff"> printf("Enter minimum block strength [%d]: ", MinStr);</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1679" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1679
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1679" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1680" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1680
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1680" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, FNAMELEN, stdin);</span></span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1681
</td>
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<pre style="margin: 0;">+<span id="LC1681" class="line" lang="diff"> if (strlen(ctemp)) MinStr = atoi(ctemp);</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1682" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1682
</td>
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<pre style="margin: 0;">+<span id="LC1682" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1683" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1683
</td>
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<pre style="margin: 0;">+<span id="LC1683" class="line" lang="diff"> /*-----------Arg 3, Maximum block strength----------------------*/</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1684" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1684
</td>
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<pre style="margin: 0;">+<span id="LC1684" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -148,7 +148,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1685" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1685
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<pre style="margin: 0;">+<span id="LC1685" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1686" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1686
</td>
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<pre style="margin: 0;">+<span id="LC1686" class="line" lang="diff"> MaxStr = MAXSTR;</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1687" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1687
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1687" class="line" lang="diff"> printf("Enter maximum block strength [%d]: ", MaxStr);</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1688" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1688
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1688" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1689" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1689
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1689" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, FNAMELEN, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1690" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1690
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1690" class="line" lang="diff"> if (strlen(ctemp)) MaxStr = atoi(ctemp);</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1691" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1691
</td>
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<pre style="margin: 0;">+<span id="LC1691" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1692" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1692
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1692" class="line" lang="diff"> printf("Minimum block strength=%d, Maximum block strength=%d\n",</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1693" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1693
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1693" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -165,7 +165,7 @@ char *argv[];</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1694" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1694
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1694" class="line" lang="diff"> printf(" or w for existing sequence weights\n");</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1695" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1695
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1695" class="line" lang="diff"> printf(" or pn for position-based weights, PB weight = 1/n\n");</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1696" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1696
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1696" class="line" lang="diff"> printf("Enter clustering identity percentage or n/e/w/pn [e]: ");</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1697
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1697" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1698" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1698
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1698" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, FNAMELEN, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1699" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1699
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1699" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1700" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1700
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1700" class="line" lang="diff"> /* e => -1, n=> -2, w=> -3 p=> -4 */</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1701" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1701
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1701" class="line" lang="diff"> Cluster = -1;</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1702" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1702
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1702" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -208,7 +208,7 @@ char *argv[];</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1703" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1703
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1703" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1704" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1704
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1704" class="line" lang="diff"> iscale = 0; </span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1705" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1705
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1705" class="line" lang="diff"> printf("Enter scale n for 1/n bits [%d]: ", iscale);</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1706" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1706
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1706" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1707" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1707
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1707" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, FNAMELEN, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1708" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1708
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1708" class="line" lang="diff"> if (strlen(ctemp)) iscale = atoi(ctemp);</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1709" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1709
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1709" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1710" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1710
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1710" class="line" lang="diff"> if (iscale < 0) iscale = 0;</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1711" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1711
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1711" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/protomat/uextract.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1712
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1712" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/protomat/uextract.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1713" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1713
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1713" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -130,7 +130,7 @@ char *argv[];</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1714
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1714" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1715" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1715
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1715" class="line" lang="diff"> {</span>
</pre>
</td>
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<td class="diff-line-num new new_line" data-linenumber="1716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1716
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<pre style="margin: 0;">+<span id="LC1716" class="line" lang="diff"> printf("\nEnter name of file containing list of entries to extract: ");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1717
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<pre style="margin: 0;">+<span id="LC1717" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(lisfile);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1718" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1718
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<pre style="margin: 0;">+<span id="LC1718" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(lisfile, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1719
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<pre style="margin: 0;">+<span id="LC1719" class="line" lang="diff"> }</span>
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<td class="diff-line-num new new_line" data-linenumber="1720" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1720
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<pre style="margin: 0;">+<span id="LC1720" class="line" lang="diff"> if ( (flis=fopen(lisfile, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1721
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<pre style="margin: 0;">+<span id="LC1721" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1722
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<pre style="margin: 0;">+<span id="LC1722" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -144,7 +144,7 @@ char *argv[];</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1723" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1723
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<pre style="margin: 0;">+<span id="LC1723" class="line" lang="diff"> else</span>
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<td class="diff-line-num new new_line" data-linenumber="1724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1724
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<pre style="margin: 0;">+<span id="LC1724" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1725
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<pre style="margin: 0;">+<span id="LC1725" class="line" lang="diff"> printf("\nEnter name of database file to extract entries from: ");</span>
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<td class="diff-line-num new new_line" data-linenumber="1726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1726
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<pre style="margin: 0;">+<span id="LC1726" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1727" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1727
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<pre style="margin: 0;">+<span id="LC1727" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1728" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1728
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<pre style="margin: 0;">+<span id="LC1728" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1729
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<pre style="margin: 0;">+<span id="LC1729" class="line" lang="diff"> if ( (fin=fopen(infile, "r")) == NULL)</span>
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1730
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<pre style="margin: 0;">+<span id="LC1730" class="line" lang="diff"> {</span></pre>
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<li id="4d4a394ff4174f20019a8af4d8b6185efe92c21f">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#4d4a394ff4174f20019a8af4d8b6185efe92c21f"><strong>debian/patches/hardening.patch</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Propagate hardening options</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Last-Update: Thu, 10 Jan 2019 22:19:40 +0100</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -14,10 +14,10 @@ libdir ?= $(prefix)/lib</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> all: blimps protomat</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> blimps:</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(MAKE) -C $(BLIMPSDIR) -f Makefile.Linux VERSION=$(VERSION)</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(MAKE) -C $(BLIMPSDIR) -f Makefile.Linux VERSION=$(VERSION) DEBCFLAGS="$(CFLAGS)" DEBLDFLAGS="$(LDFLAGS)"</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> protomat:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(MAKE) -C $(PROTOMATDIR) -f Makefile.Linux VERSION=$(VERSION)</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(MAKE) -C $(PROTOMATDIR) -f Makefile.Linux VERSION=$(VERSION) DEBCFLAGS="$(CFLAGS)" DEBLDFLAGS="$(LDFLAGS)"</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> # The sift package does not provide fastaseqs but expects it to exist. Fortunately this package provides it.</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> install: install-utils install-lib-dev install-lib install-data install-doc</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/Makefile.Linux</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/Makefile.Linux</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -112,11 +112,11 @@ INCLUDES = -I$(INCLUDE_DIR)</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> # C Flags to compiler</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> #CFLAGS = `getconf LFS_CFLAGS` $(OPTIMIZ) $(DEFINES) $(INCLUDES)</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CFLAGS = $(OPTIMIZ) $(DEFINES) $(INCLUDES) -fpic</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS = $(DEBCFLAGS) $(OPTIMIZ) $(DEFINES) $(INCLUDES) -fpic</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> # Linker Flags</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LDFLAGS = $(CFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LDFLAGS = $(DEBLDFLAGS)</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> LDLIBS = -lblimps -lm</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> LDOPTIONS = $(LDFLAGS) $(LDDIR)</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> # cc ld options</span></pre>
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<li id="dc053169aa7f9d53c38ea6df4723f4380e6fd5cb">
<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#dc053169aa7f9d53c38ea6df4723f4380e6fd5cb"><strong>debian/patches/patch001</strong>
→
<strong>debian/patches/makefile.patch</strong>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">Author: Laszlo Kajan</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Last-Update: 2012-01-31 17:21:48 +0000</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff">Description: * replaced gets() with fgets()</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"> * fixes to blimps/Makefile.Linux</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Description: fixes to blimps/Makefile.Linux</span>
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5
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/addseqs.c</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/addseqs.c</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -150,7 +150,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> else</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> {</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> printf("\nEnter name of file containing blocks: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, MAXNAME, stdin);</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> }</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> if ( (fblk=fopen(infile, "r")) == NULL)</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> {</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -164,7 +164,7 @@ int main(argc, argv)</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> printf("\nEnter name of sequence file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(seqsfile);</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(seqsfile, MAXNAME, stdin);</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> }</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> if ( (fseq=fopen(seqsfile, "r")) == NULL)</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"> {</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -177,7 +177,7 @@ int main(argc, argv)</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"> else</span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"> {</span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"> printf("\nEnter name of output seqs file: ");</span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, MAXNAME, stdin);</span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"> if ( (fout=fopen(outfile, "w")) == NULL)</span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/biassed_blocks_finder.c</span></span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/biassed_blocks_finder.c</span></span>
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37
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -25,6 +25,11 @@ char x2c(char *what);</span></span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"> void unescape_url(char *url);</span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"> void plustospace(char *str);</span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"> */</span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// lkajan: very nice but util.c does not have an interface defined</span></span>
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42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// lkajan: can't figure out where this came from but it certainly picked up the wrong fmakeword</span></span>
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43
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+char *fmakeword(FILE *f, char stop, int *cl);</span></span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+char *makeword(char *line, char stop);</span></span>
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45
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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46
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="diff"> </span>
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47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="diff"> entry entries[10000];</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -124,7 +129,7 @@ void write_block()</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="diff"> /* check that a block was specified */</span>
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53
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (BLOCK_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (BLOCK_Ptr->val[0] == 0)</span></span>
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55
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="diff"> {</span>
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56
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="diff"> printf("<H1>Error</H1>\n");</span>
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57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="diff"> printf("You need to enter a block by writing or pasting a block in the window.<P>\n");</span>
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58
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -139,7 +144,7 @@ void write_block()</span></span>
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59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="diff"> </span>
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60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="diff"> /* if block was pasted/written - */</span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (BLOCK_Ptr->val[0] != NULL)</span></span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (BLOCK_Ptr->val[0] != 0)</span></span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="diff"> {</span>
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65
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="diff"> </span>
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66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="diff"> /* open up the block file to write to */</span>
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<td class="diff-line-num old old_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -264,7 +269,7 @@ void display_output()</span></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="diff"> /**********************************************************************/</span>
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70
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="diff"> </span>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="diff"> printf("Content-type: text/html\n\n\n");</span>
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75
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
76
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -301,6 +306,6 @@ void main(int argc, char *argv[]) {</span></span>
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77
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
78
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="diff"> clean_temp_files() ;</span>
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<td class="diff-line-num old old_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
80
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0) ;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0) ;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
82
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blalign.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blalign.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
86
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -119,7 +119,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
89
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="diff"> printf("\nEnter name of file of blocks: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
91
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
92
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
93
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
94
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
95
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/bldist.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
96
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/bldist.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
97
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -70,7 +70,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="diff"> printf("\nEnter name of file of fasta multiple alignments: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
101
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
104
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="diff"> if ( (ifp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
105
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
106
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -94,7 +94,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
107
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
109
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="diff"> printf("\nEnter name of file containing substitution matrix: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
110
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(sijname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(sijname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
113
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="diff"> if ( (sfp=fopen(sijname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
114
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
115
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -127,7 +127,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
119
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
120
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC120" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
121
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
122
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="diff"> if ( (ofp=fopen(outname, "w")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
123
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC123" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
124
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -140,7 +140,7 @@ int main(argc, argv)</span></span>
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125
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="diff"> else</span>
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126
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="diff"> {</span>
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127
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="diff"> printf("\nEnter type (S=similarity, D=dissimilarity, C=correlation): ");</span>
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128
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
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129
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="diff"> }</span>
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131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="diff"> OutType = 1; /* similarity is default */</span>
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<td class="diff-line-num old old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
132
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="diff"> if (ctemp[0] == 'd' || ctemp[0] == 'D' || ctemp[0] == '2') OutType = 2;</span>
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133
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blDR.c</span></span>
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134
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blDR.c</span></span>
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135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -56,7 +56,7 @@ int main(argc, argv)</span></span>
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136
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="diff"> else</span>
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137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="diff"> {</span>
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138
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="diff"> }</span>
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142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="diff"> {</span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -69,7 +69,7 @@ int main(argc, argv)</span></span>
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145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="diff"> {</span>
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146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="diff"> printf("\nSequence database must be in fasta format:");</span>
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147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="diff"> printf("\nEnter name of sequence database: ");</span>
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148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(sdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(sdbname, MAXNAME, stdin);</span></span>
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150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="diff"> }</span>
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151
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="diff"> if ( (sfp=fopen(sdbname, "r")) == NULL)</span>
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152
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -81,7 +81,7 @@ int main(argc, argv)</span></span>
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154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
155
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
156
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="diff"> printf("\nEnter name of new blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
157
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
158
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
159
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
160
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="diff"> if ( (ofp=fopen(outname, "w")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
161
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
162
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blexplode.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
163
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blexplode.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
164
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -29,7 +29,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
166
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
172
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
173
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2DR.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
174
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2DR.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
175
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -31,7 +31,7 @@ int main(argc, argv)</span></span>
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176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
180
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2GC.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2GC.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -30,7 +30,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2lis.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2lis.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
197
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -30,7 +30,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="diff"> {</span>
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200
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
201
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
203
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="diff"> }</span>
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204
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2mot.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
207
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2mot.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
208
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -43,7 +43,7 @@ char *Seq[MAXSEQS]; /* sequences */</span></span>
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<td class="diff-line-num old old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
209
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="diff"> char Seqname[MAXSEQS][SNAMELEN];</span>
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<td class="diff-line-num old old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="diff"> /*=======================================================================*/</span>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
212
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
213
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
214
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="diff"> int argc;</span>
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215
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="diff"> char *argv[];</span>
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216
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="diff"> {</span>
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217
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -71,7 +71,7 @@ void main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
218
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="diff"> else</span>
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219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="diff"> {</span>
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220
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="diff"> printf("\nEnter name of file containing sequences: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
221
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(seqfile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
222
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(seqfile, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
223
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
224
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="diff"> if ( (fseq=fopen(seqfile, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
225
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
226
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -92,7 +92,7 @@ void main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
227
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
228
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
229
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="diff"> printf("\nEnter name of blocks file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
230
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blkfile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
231
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blkfile, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
233
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="diff"> if ( (fblk=fopen(blkfile, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
234
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
235
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -126,7 +126,7 @@ void main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
236
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="diff"> else</span>
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237
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
238
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="diff"> printf("\nEnter name of new motomat file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
239
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(motfile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
240
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(motfile, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
241
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
242
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="diff"> if ( (fmot=fopen(motfile, "wb")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
243
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
244
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -135,7 +135,7 @@ void main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
245
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
246
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="diff"> write_motifs(fmot, info, motif);</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
247
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="diff"> fclose(fmot);</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
248
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
249
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
250
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="diff"> } /* end of main */</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
251
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="diff"> </span>
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252
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="diff"> /*======================================================================</span>
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253
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2pssm.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
254
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2pssm.c</span></span>
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255
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -67,7 +67,8 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
256
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="diff"> Block *block;</span>
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<td class="diff-line-num old old_line" data-linenumber="257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
257
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="diff"> Matrix *matrix, *logodds;</span>
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<td class="diff-line-num old old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
258
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="diff"> char bdbname[MAXNAME], conname[MAXNAME];</span>
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<td class="diff-line-num old old_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
259
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char ctemp[10];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
260
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define BLK2PSSM_CTEMPLEN 10</span></span>
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<td class="diff-line-num old old_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
261
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char ctemp[BLK2PSSM_CTEMPLEN];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
262
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="diff"> int format, type, itemp;</span>
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<td class="diff-line-num old old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
263
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
264
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="diff"> ErrorLevelReport = 5; /* No blimps errors reported */</span>
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<td class="diff-line-num old old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
265
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -87,7 +88,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
266
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
267
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
268
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="diff"> printf("\nEnter name of BLOCKS input file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
269
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
270
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
271
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
273
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
274
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -100,7 +101,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
275
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="diff"> printf("\nEnter name of PSSM output file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
278
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
279
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
282
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
283
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -115,7 +116,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
284
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
285
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
286
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="diff"> printf("\nEnter PSSM format type (B=blimps, M=mast, G=Gribskov, P=Psi-Blast) [B]: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
287
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
288
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, BLK2PSSM_CTEMPLEN, stdin );</span></span>
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<td class="diff-line-num old old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
290
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="diff"> if (strlen(ctemp) && (ctemp[0] == 'm' || ctemp[0] == 'M'))</span>
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<td class="diff-line-num old old_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="diff"> { format = 1; type = 6; }</span>
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<td class="diff-line-num old old_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blk2slx.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blk2slx.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -35,7 +35,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
296
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
297
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
298
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
299
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC299" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
300
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
301
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
303
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -48,7 +48,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
304
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
305
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
306
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="diff"> printf("\nEnter name of new slx database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
307
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
308
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
309
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
310
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
311
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<pre style="margin: 0;">-<span id="LC311" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
312
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blklis.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
313
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blklis.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
314
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -34,7 +34,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
315
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
316
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
317
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="diff"> printf("\nEnter name of file of blocks: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
318
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
319
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC319" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, 80, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
320
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
321
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC321" class="line" lang="diff"> if ( (fin=fopen(infile, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
322
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC322" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
323
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC323" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -46,7 +46,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
324
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC324" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
325
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC325" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
326
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC326" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
327
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<pre style="margin: 0;">-<span id="LC327" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
328
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<pre style="margin: 0;">-<span id="LC328" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, 80, stdin );</span></span>
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329
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<pre style="margin: 0;">-<span id="LC329" class="line" lang="diff"> }</span>
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330
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<pre style="margin: 0;">-<span id="LC330" class="line" lang="diff"> if ( (fout=fopen(outfile, "w+")) == NULL)</span>
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331
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="diff"> {</span>
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332
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<pre style="margin: 0;">-<span id="LC332" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blkprob.c</span></span>
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333
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blkprob.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="334" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
334
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -325,7 +325,7 @@ char *argv[];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
335
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<pre style="margin: 0;">-<span id="LC335" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
336
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<pre style="margin: 0;">-<span id="LC336" class="line" lang="diff"> printf("\nEnter number of hits to report or ");</span>
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337
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="diff"> printf("blimps configuration file name [%d]: ", MaxHit);</span>
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<td class="diff-line-num old old_line" data-linenumber="338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
338
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
339
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, FNAMELEN, stdin);</span></span>
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340
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="341" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
341
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="diff"> if (!strlen(ctemp)) strcpy(ctemp, "0");</span>
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342
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<pre style="margin: 0;">-<span id="LC342" class="line" lang="diff"> for (i=0; i<strlen(ctemp); i++)</span>
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343
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -353,7 +353,7 @@ char *argv[];</span></span>
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344
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="diff"> else</span>
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345
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<pre style="margin: 0;">-<span id="LC345" class="line" lang="diff"> {</span>
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346
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<pre style="margin: 0;">-<span id="LC346" class="line" lang="diff"> printf("\nEnter name of file containing blocks search results: ");</span>
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347
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(homfile);</span></span>
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348
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(homfile, FNAMELEN, stdin);</span></span>
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349
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="diff"> }</span>
</pre>
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350
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<pre style="margin: 0;">-<span id="LC350" class="line" lang="diff"> /*------------- arg 3: blocks database file -----------------------*/</span>
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<td class="diff-line-num old old_line" data-linenumber="351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
351
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<pre style="margin: 0;">-<span id="LC351" class="line" lang="diff"> db[0] = '\0';</span>
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352
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -362,7 +362,7 @@ char *argv[];</span></span>
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<pre style="margin: 0;">-<span id="LC353" class="line" lang="diff"> else</span>
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354
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<pre style="margin: 0;">-<span id="LC354" class="line" lang="diff"> {</span>
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355
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<pre style="margin: 0;">-<span id="LC355" class="line" lang="diff"> printf("\nEnter name of blocks database searched: ");</span>
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356
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<pre style="margin: 0;">-<span id="LC356" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(datfile);</span></span>
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357
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<pre style="margin: 0;">-<span id="LC357" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(datfile, FNAMELEN, stdin);</span></span>
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358
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="diff"> }</span>
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359
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="diff"> if (strlen(datfile))</span>
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360
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="diff"> {</span>
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361
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<pre style="margin: 0;">-<span id="LC361" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blocks.c</span></span>
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<pre style="margin: 0;">-<span id="LC362" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blocks.c</span></span>
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<pre style="margin: 0;">-<span id="LC363" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -891,7 +891,7 @@ void print_block(block)</span></span>
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<pre style="margin: 0;">-<span id="LC364" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC365" class="line" lang="diff"> } </span>
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<pre style="margin: 0;">-<span id="LC366" class="line" lang="diff"> else {</span>
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<pre style="margin: 0;">-<span id="LC367" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf("??) \t");</span></span>
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<pre style="margin: 0;">-<span id="LC368" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("??" ") \t");</span></span>
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369
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="diff"> for(k=0; k<block->clusters[i].sequences[j].length; k++) {</span>
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370
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<pre style="margin: 0;">-<span id="LC370" class="line" lang="diff"> printf("%c", aa_btoa[block->clusters[i].sequences[j].sequence[k]]);</span>
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371
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<pre style="margin: 0;">-<span id="LC371" class="line" lang="diff"> }</span>
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372
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<pre style="margin: 0;">-<span id="LC372" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blocks_search.c</span></span>
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373
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<pre style="margin: 0;">-<span id="LC373" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blocks_search.c</span></span>
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374
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<pre style="margin: 0;">-<span id="LC374" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -302,8 +302,9 @@ fprintf(jgh,"Address_Ptr->val=%s\n", Add</span></span>
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375
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<pre style="margin: 0;">-<span id="LC375" class="line" lang="diff"> else if (!strncmp(entries[i].val, "pfam", 9))</span>
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376
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="diff"> { Pfam_Flag = TRUE; }</span>
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<pre style="margin: 0;">-<span id="LC377" class="line" lang="diff"> }</span>
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378
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- else if (!strncmp(entries[i].name, "bias", 4)) </span></span>
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379
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<pre style="margin: 0;">-<span id="LC379" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- { strcpy(Minus_Flag, entries[i].val); }</span></span>
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380
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<pre style="margin: 0;">-<span id="LC380" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// lkajan: what was the intention here? Looks like this would copy entries[i].val to the value of boolean Minus_Flag interpreted as a pointer - trigger to segfault?</span></span>
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381
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// else if (!strncmp(entries[i].name, "bias", 4))</span></span>
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382
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// { strcpy(Minus_Flag, entries[i].val); }</span></span>
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383
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="diff"> else if (!strncmp(entries[i].name, "ty", 2)) </span>
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384
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<pre style="margin: 0;">-<span id="LC384" class="line" lang="diff"> { strcpy(type, entries[i].val); }</span>
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385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="diff"> else if (!strncmp(entries[i].name, "st", 2)) </span>
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386
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<pre style="margin: 0;">-<span id="LC386" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -379,7 +380,7 @@ void write_csh()</span></span>
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387
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="diff"> </span>
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388
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<pre style="margin: 0;">-<span id="LC388" class="line" lang="diff"> cshp = fopen(csh_file, "w");</span>
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389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="diff"> </span>
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390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fprintf(cshp, "\#\!/bin/csh\n");</span></span>
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391
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<pre style="margin: 0;">-<span id="LC391" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf(cshp, "#!/bin/csh\n");</span></span>
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392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="diff"> fprintf(cshp, "unalias mv\n");</span>
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393
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="diff"> fprintf(cshp, "%s %s >& /dev/null\n", blimps, cs_file);</span>
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394
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<pre style="margin: 0;">-<span id="LC394" class="line" lang="diff"> if (Title_Ptr != NULL)</span>
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395
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -419,7 +420,7 @@ void write_csh()</span></span>
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396
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="diff"> mailprog, email_addr, buf, Address_Ptr->val, blksort_output);</span>
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397
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="diff"> }</span>
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398
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="diff"> }</span>
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399
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fprintf(cshp, "exit\(0\)\n");</span></span>
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400
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf(cshp, "exit(0)\n");</span></span>
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401
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="diff"> fclose(cshp);</span>
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402
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="diff"> sprintf(buf, "chmod a+x %s", csh_file);</span>
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403
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<pre style="margin: 0;">-<span id="LC403" class="line" lang="diff"> system(buf);</span>
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404
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<pre style="margin: 0;">-<span id="LC404" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -433,7 +434,7 @@ void write_sequence()</span></span>
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405
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="diff"> Boolean loop = TRUE;</span>
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406
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<pre style="margin: 0;">-<span id="LC406" class="line" lang="diff"> int tot, sum;</span>
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407
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="diff"> </span>
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408
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<pre style="margin: 0;">-<span id="LC408" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Sequence_Ptr->val[0] == NULL) {</span></span>
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409
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (Sequence_Ptr->val[0] == 0) {</span></span>
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410
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="diff"> printf("<H1>Search Error</H1>\n");</span>
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<td class="diff-line-num old old_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="diff"> printf("You need to enter a sequence to search with.<P>\n");</span>
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412
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="diff"> exit(0);</span>
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<td class="diff-line-num old old_line" data-linenumber="413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
413
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -590,7 +591,7 @@ void display_html()</span></span>
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<td class="diff-line-num old old_line" data-linenumber="414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
414
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="diff"> </span>
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415
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="diff"> </span>
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416
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="diff"> /*=======================================================================*/</span>
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417
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<pre style="margin: 0;">-<span id="LC417" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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418
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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419
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="diff"> </span>
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420
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="diff"> </span>
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421
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="diff"> /*</span>
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422
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -655,5 +656,5 @@ jgh = fopen("jorja.out", "w");</span></span>
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423
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="diff"> /*</span>
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424
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="diff"> fclose(jgh);</span>
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<td class="diff-line-num old old_line" data-linenumber="425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
425
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="diff"> */</span>
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426
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
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427
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="diff"> } /* end of main */</span>
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/block_vis.c</span></span>
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/block_vis.c</span></span>
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<pre style="margin: 0;">-<span id="LC431" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -868,7 +868,7 @@ void read_file(char *ifilename, char *of</span></span>
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="diff"> * each input file. The only actual work done here is interpreting</span>
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="diff"> * '*' in the output filename.</span>
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="diff"> */</span>
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[])</span></span>
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[])</span></span>
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="diff"> int i1, i2, i3, i4;</span>
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="diff"> char out_filename[80];</span>
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<pre style="margin: 0;">-<span id="LC440" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -910,5 +910,7 @@ void main(int argc, char *argv[])</span></span>
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="diff"> /* No arguments? Give the user some help (and skip the warning above) */</span>
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="diff"> if (argc == 1)</span>
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="diff"> do_help();</span>
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<pre style="margin: 0;">-<span id="LC444" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blpssm.c</span></span>
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blpssm.c</span></span>
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<pre style="margin: 0;">-<span id="LC450" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -241,7 +241,7 @@ int main(argc, argv)</span></span>
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
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<pre style="margin: 0;">-<span id="LC454" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(cfname);</span></span>
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(cfname, FNAMELEN, stdin);</span></span>
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<pre style="margin: 0;">-<span id="LC456" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="diff"> if ( (cfp=fopen(cfname, "r")) == NULL)</span>
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<pre style="margin: 0;">-<span id="LC458" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC459" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/blweight.c</span></span>
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/blweight.c</span></span>
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<pre style="margin: 0;">-<span id="LC461" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -92,7 +92,8 @@ int main(argc, argv)</span></span>
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="diff"> FILE *bfp, *ofp;</span>
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="diff"> Block *block, *cblock;</span>
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<pre style="margin: 0;">-<span id="LC464" class="line" lang="diff"> int wtype, clus, stype;</span>
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<pre style="margin: 0;">-<span id="LC465" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char bdbname[MAXNAME], conname[MAXNAME], ctemp[10];</span></span>
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<pre style="margin: 0;">-<span id="LC466" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define BLWEIGHT_CTEMPLEN 10</span></span>
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char bdbname[MAXNAME], conname[MAXNAME], ctemp[BLWEIGHT_CTEMPLEN];</span></span>
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="diff"> struct timeval tv;</span>
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="diff"> ErrorLevelReport = 5; /* don't want to see them */</span>
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<pre style="margin: 0;">-<span id="LC471" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -119,7 +120,7 @@ int main(argc, argv)</span></span>
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<pre style="margin: 0;">-<span id="LC472" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">-<span id="LC473" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC474" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( bdbname, MAXNAME, stdin );</span></span>
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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479
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="diff"> {</span>
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480
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -132,7 +133,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
481
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="diff"> else</span>
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482
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="diff"> {</span>
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483
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="diff"> printf("\nEnter name of new weighted blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
484
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
485
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( conname, MAXNAME, stdin );</span></span>
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<td class="diff-line-num old old_line" data-linenumber="486" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
486
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="diff"> }</span>
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487
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
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488
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="diff"> {</span>
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489
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -149,7 +150,7 @@ int main(argc, argv)</span></span>
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490
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
491
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="diff"> printf("\nEnter weighting scheme (P=position-based, V=Voronoi, ");</span>
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492
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="diff"> printf("\n A=Vingron & Argos, Cn = n-percent cluster [P]: ");</span>
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493
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
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494
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin );</span></span>
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<td class="diff-line-num old old_line" data-linenumber="495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="diff"> }</span>
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496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="diff"> if (strlen(ctemp))</span>
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497
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
498
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -187,7 +188,7 @@ int main(argc, argv)</span></span>
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499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="diff"> else</span>
</pre>
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500
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="diff"> {</span>
</pre>
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501
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="diff"> printf("\nEnter scale (M=>max=100, N=>sum=#seq, ###=>sum=###) [M]: ");</span>
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502
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="503" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
503
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin );</span></span>
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504
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="diff"> }</span>
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505
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="diff"> if (strlen(ctemp))</span>
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506
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="diff"> {</span>
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507
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/cobbler.c</span></span>
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508
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/cobbler.c</span></span>
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509
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -256,7 +256,7 @@ int main(argc, argv)</span></span>
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510
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="diff"> else</span>
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511
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="diff"> {</span>
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512
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
513
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(cfname);</span></span>
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514
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(cfname, MAXNAME, stdin);</span></span>
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515
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="diff"> }</span>
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516
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<pre style="margin: 0;">-<span id="LC516" class="line" lang="diff"> if ( (cfp=fopen(cfname, "r")) == NULL)</span>
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517
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="diff"> {</span>
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518
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/coduse.c</span></span>
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519
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/coduse.c</span></span>
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520
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -65,7 +65,7 @@ char *argv[];</span></span>
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521
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="diff"> else</span>
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522
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="diff"> {</span>
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523
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<pre style="margin: 0;">-<span id="LC523" class="line" lang="diff"> printf("\nEnter name of CUTG spsum file: ");</span>
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524
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<pre style="margin: 0;">-<span id="LC524" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
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525
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<pre style="margin: 0;">-<span id="LC525" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, MAXNAME, stdin );</span></span>
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526
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<pre style="margin: 0;">-<span id="LC526" class="line" lang="diff"> }</span>
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527
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<pre style="margin: 0;">-<span id="LC527" class="line" lang="diff"> if ( (fin=fopen(infile, "r")) == NULL)</span>
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528
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="diff"> {</span>
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529
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<pre style="margin: 0;">-<span id="LC529" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -78,7 +78,7 @@ char *argv[];</span></span>
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530
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<pre style="margin: 0;">-<span id="LC530" class="line" lang="diff"> else</span>
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531
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="diff"> {</span>
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532
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="diff"> printf("Enter organism name (leave blank for first organism in file): ");</span>
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533
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(organism);</span></span>
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534
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(organism, MAXNAME, stdin);</span></span>
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535
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<pre style="margin: 0;">-<span id="LC535" class="line" lang="diff"> }</span>
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536
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<pre style="margin: 0;">-<span id="LC536" class="line" lang="diff"> if (strlen(organism))</span>
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537
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<pre style="margin: 0;">-<span id="LC537" class="line" lang="diff"> {</span>
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538
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -95,7 +95,7 @@ char *argv[];</span></span>
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539
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="diff"> else</span>
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540
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<pre style="margin: 0;">-<span id="LC540" class="line" lang="diff"> {</span>
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541
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<pre style="margin: 0;">-<span id="LC541" class="line" lang="diff"> printf("\nEnter name of Blimps codon usage output file: ");</span>
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542
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<pre style="margin: 0;">-<span id="LC542" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
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543
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<pre style="margin: 0;">-<span id="LC543" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, MAXNAME, stdin);</span></span>
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544
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<pre style="margin: 0;">-<span id="LC544" class="line" lang="diff"> }</span>
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545
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<pre style="margin: 0;">-<span id="LC545" class="line" lang="diff"> if ( (fout=fopen(outfile, "w")) == NULL)</span>
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546
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<pre style="margin: 0;">-<span id="LC546" class="line" lang="diff"> {</span>
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547
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<pre style="margin: 0;">-<span id="LC547" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/email.c</span></span>
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548
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<pre style="margin: 0;">-<span id="LC548" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/email.c</span></span>
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<pre style="margin: 0;">-<span id="LC549" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -35,7 +35,7 @@ int main(argc, argv)</span></span>
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550
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<pre style="margin: 0;">-<span id="LC550" class="line" lang="diff"> else</span>
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551
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="diff"> {</span>
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552
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<pre style="margin: 0;">-<span id="LC552" class="line" lang="diff"> printf("\nEnter name of sequence file: ");</span>
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553
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<pre style="margin: 0;">-<span id="LC553" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(filename);</span></span>
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554
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<pre style="margin: 0;">-<span id="LC554" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(filename, MAXNAME, stdin);</span></span>
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555
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<pre style="margin: 0;">-<span id="LC555" class="line" lang="diff"> }</span>
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556
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<pre style="margin: 0;">-<span id="LC556" class="line" lang="diff"> if ( (bfp=fopen(filename, "r")) == NULL)</span>
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557
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<pre style="margin: 0;">-<span id="LC557" class="line" lang="diff"> {</span>
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558
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<pre style="margin: 0;">-<span id="LC558" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/fastaseqs.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
559
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/fastaseqs.c</span></span>
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560
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -39,7 +39,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
561
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<pre style="margin: 0;">-<span id="LC561" class="line" lang="diff"> else</span>
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562
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<pre style="margin: 0;">-<span id="LC562" class="line" lang="diff"> {</span>
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563
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<pre style="margin: 0;">-<span id="LC563" class="line" lang="diff"> printf("\nEnter name of input sequence file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
564
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(infile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
565
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(infile, MAXNAME, stdin);</span></span>
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566
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="diff"> }</span>
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567
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="diff"> if ( (fin=fopen(infile, "r")) == NULL)</span>
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568
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<pre style="margin: 0;">-<span id="LC568" class="line" lang="diff"> {</span>
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569
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<pre style="margin: 0;">-<span id="LC569" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -52,7 +52,7 @@ int main(argc, argv)</span></span>
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570
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<pre style="margin: 0;">-<span id="LC570" class="line" lang="diff"> else</span>
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571
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<pre style="margin: 0;">-<span id="LC571" class="line" lang="diff"> {</span>
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572
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<pre style="margin: 0;">-<span id="LC572" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
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573
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<pre style="margin: 0;">-<span id="LC573" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outfile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
574
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<pre style="margin: 0;">-<span id="LC574" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outfile, MAXNAME, stdin);</span></span>
</pre>
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575
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<pre style="margin: 0;">-<span id="LC575" class="line" lang="diff"> }</span>
</pre>
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576
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<pre style="margin: 0;">-<span id="LC576" class="line" lang="diff"> if ( (fout=fopen(outfile, "w")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
577
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<pre style="margin: 0;">-<span id="LC577" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
578
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<pre style="margin: 0;">-<span id="LC578" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/find_biassed_blocks.c</span></span>
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579
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<pre style="margin: 0;">-<span id="LC579" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/find_biassed_blocks.c</span></span>
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580
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<pre style="margin: 0;">-<span id="LC580" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -290,7 +290,7 @@ int *min_cols;</span></span>
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581
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<pre style="margin: 0;">-<span id="LC581" class="line" lang="diff"> else /* get input file interactively */</span>
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582
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<pre style="margin: 0;">-<span id="LC582" class="line" lang="diff"> {</span>
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583
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<pre style="margin: 0;">-<span id="LC583" class="line" lang="diff"> printf("\nEnter name of a file with blocks or block matrices: ");</span>
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584
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<pre style="margin: 0;">-<span id="LC584" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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585
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<pre style="margin: 0;">-<span id="LC585" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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586
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<pre style="margin: 0;">-<span id="LC586" class="line" lang="diff"> }</span>
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587
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<pre style="margin: 0;">-<span id="LC587" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC588" class="line" lang="diff"> if ( (*bfp=fopen(bdbname, "r")) == NULL)</span>
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589
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<pre style="margin: 0;">-<span id="LC589" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/format_block.c</span></span>
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590
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<pre style="margin: 0;">-<span id="LC590" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/format_block.c</span></span>
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591
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<pre style="margin: 0;">-<span id="LC591" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -242,14 +242,14 @@ void clean_temp_files()</span></span>
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<pre style="margin: 0;">-<span id="LC592" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="diff"> </span>
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594
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="diff"> /* </span>
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595
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<pre style="margin: 0;">-<span id="LC595" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- * resize_block_sequences</span></span>
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596
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<pre style="margin: 0;">-<span id="LC596" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ * fb_resize_block_sequences</span></span>
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597
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<pre style="margin: 0;">-<span id="LC597" class="line" lang="diff"> * Increases the memory for the storage of the sequences of a block.</span>
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598
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<pre style="margin: 0;">-<span id="LC598" class="line" lang="diff"> * Parameter:</span>
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599
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<pre style="margin: 0;">-<span id="LC599" class="line" lang="diff"> * Block *block: the block to resize</span>
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600
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<pre style="margin: 0;">-<span id="LC600" class="line" lang="diff"> * Error codes: none</span>
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601
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<pre style="margin: 0;">-<span id="LC601" class="line" lang="diff"> */</span>
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602
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<pre style="margin: 0;">-<span id="LC602" class="line" lang="diff"> </span>
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603
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<pre style="margin: 0;">-<span id="LC603" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-static void resize_block_sequences(block)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
604
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<pre style="margin: 0;">-<span id="LC604" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+static void fb_resize_block_sequences(block)</span></span>
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<pre style="margin: 0;">-<span id="LC605" class="line" lang="diff"> Block *block;</span>
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<pre style="margin: 0;">-<span id="LC606" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC607" class="line" lang="diff"> int i;</span>
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<pre style="margin: 0;">-<span id="LC608" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -315,13 +315,13 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC609" class="line" lang="diff"> /* check that obligatory fields have something */</span>
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610
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<pre style="margin: 0;">-<span id="LC610" class="line" lang="diff"> </span>
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611
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<pre style="margin: 0;">-<span id="LC611" class="line" lang="diff"> /* Note if sequence names and start positions not supplied */</span>
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612
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<pre style="margin: 0;">-<span id="LC612" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQ_NAMES_Ptr->val[0] == NULL) no_seq_names = 1 ;</span></span>
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<pre style="margin: 0;">-<span id="LC613" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQ_NAMES_Ptr->val[0] == 0) no_seq_names = 1 ;</span></span>
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614
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<pre style="margin: 0;">-<span id="LC614" class="line" lang="diff"> else no_seq_names = 0 ; </span>
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<pre style="margin: 0;">-<span id="LC615" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC616" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQ_POS_Ptr->val[0] == NULL) no_seq_pos = 1 ;</span></span>
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<pre style="margin: 0;">-<span id="LC617" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQ_POS_Ptr->val[0] == 0) no_seq_pos = 1 ;</span></span>
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<pre style="margin: 0;">-<span id="LC618" class="line" lang="diff"> else no_seq_pos = 0 ; </span>
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<pre style="margin: 0;">-<span id="LC619" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC620" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQS_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">-<span id="LC621" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQS_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">-<span id="LC622" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC623" class="line" lang="diff"> printf("<H1>Error</H1>\n");</span>
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<pre style="margin: 0;">-<span id="LC624" class="line" lang="diff"> printf("No sequences specified.<P>\n");</span>
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625
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<pre style="margin: 0;">-<span id="LC625" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -403,7 +403,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC626" class="line" lang="diff"> exit(0);</span>
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<pre style="margin: 0;">-<span id="LC627" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC628" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC629" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MA_WIDTH_Ptr->val[0] != NULL && </span></span>
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<pre style="margin: 0;">-<span id="LC630" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MA_WIDTH_Ptr->val[0] != 0 &&</span></span>
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<pre style="margin: 0;">-<span id="LC631" class="line" lang="diff"> block->width != atoi (MA_WIDTH_Ptr->val))</span>
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<pre style="margin: 0;">-<span id="LC632" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC633" class="line" lang="diff"> printf("<H2>Warning</H2>\n");</span>
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<pre style="margin: 0;">-<span id="LC634" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -470,15 +470,15 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC635" class="line" lang="diff"> if (seq_header)</span>
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<pre style="margin: 0;">-<span id="LC636" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC637" class="line" lang="diff"> /* skip blanks */</span>
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<pre style="margin: 0;">-<span id="LC638" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for(; isspace(SEQS_Ptr->val[i]) && SEQS_Ptr->val[i] != '/n' && </span></span>
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<pre style="margin: 0;">-<span id="LC639" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- SEQS_Ptr->val[i] != '/0'; i++) ;</span></span>
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<pre style="margin: 0;">-<span id="LC640" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (SEQS_Ptr->val[i] == '/n') /* no name is found in line */</span></span>
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<pre style="margin: 0;">-<span id="LC641" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for(; isspace(SEQS_Ptr->val[i]) && SEQS_Ptr->val[i] != '\n' &&</span></span>
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<pre style="margin: 0;">-<span id="LC642" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ SEQS_Ptr->val[i] != '\0'; i++) ;</span></span>
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<pre style="margin: 0;">-<span id="LC643" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (SEQS_Ptr->val[i] == '\n') /* no name is found in line */</span></span>
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<pre style="margin: 0;">-<span id="LC644" class="line" lang="diff"> sprintf(block->sequences[block->num_sequences].name, </span>
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<pre style="margin: 0;">-<span id="LC645" class="line" lang="diff"> "%s%d", UNKNOWN_SEQ_NAME, block->num_sequences+1) ;</span>
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<pre style="margin: 0;">-<span id="LC646" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">-<span id="LC647" class="line" lang="diff"> /* copy first 20 chars or until a space is reached */</span>
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<pre style="margin: 0;">-<span id="LC648" class="line" lang="diff"> for(k=0; !(isspace(SEQS_Ptr->val[i])) && k<20 &&</span>
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<pre style="margin: 0;">-<span id="LC649" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- SEQS_Ptr->val[i] != '/n' ; i++, k++) </span></span>
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<pre style="margin: 0;">-<span id="LC650" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ SEQS_Ptr->val[i] != '\n' ; i++, k++)</span></span>
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<pre style="margin: 0;">-<span id="LC651" class="line" lang="diff"> block->sequences[block->num_sequences].name[k] = SEQS_Ptr->val[i];</span>
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<pre style="margin: 0;">-<span id="LC652" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC653" class="line" lang="diff"> /* end string */</span>
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<pre style="margin: 0;">-<span id="LC654" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -520,7 +520,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC655" class="line" lang="diff"> string[j] = '\0' ;</span>
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<pre style="margin: 0;">-<span id="LC656" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC657" class="line" lang="diff"> if (block->max_sequences <= block->num_sequences+1) </span>
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<pre style="margin: 0;">-<span id="LC658" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">-<span id="LC659" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fb_resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">-<span id="LC660" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC661" class="line" lang="diff"> /* process the sequence */</span>
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<pre style="margin: 0;">-<span id="LC662" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC663" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -623,7 +623,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC664" class="line" lang="diff"> string[j] = '\0' ;</span>
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<pre style="margin: 0;">-<span id="LC665" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC666" class="line" lang="diff"> if (block->max_sequences <= k) </span>
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<pre style="margin: 0;">-<span id="LC667" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">-<span id="LC668" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fb_resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">-<span id="LC669" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC670" class="line" lang="diff"> /* copy up to first 20 chars of name */</span>
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<pre style="margin: 0;">-<span id="LC671" class="line" lang="diff"> strncpy(block->sequences[k].name,string,20) ;</span>
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<pre style="margin: 0;">-<span id="LC672" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -681,7 +681,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC673" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC674" class="line" lang="diff"> string[j] = '\0' ;</span>
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<pre style="margin: 0;">-<span id="LC675" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC676" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (block->max_sequences <= k+1) resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">-<span id="LC677" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (block->max_sequences <= k+1) fb_resize_block_sequences(block) ;</span></span>
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<pre style="margin: 0;">-<span id="LC678" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC679" class="line" lang="diff"> block->sequences[k].position = atoi(string) ;</span>
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<pre style="margin: 0;">-<span id="LC680" class="line" lang="diff"> </span>
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681
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<pre style="margin: 0;">-<span id="LC681" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -703,7 +703,7 @@ void make_block()</span></span>
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682
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<pre style="margin: 0;">-<span id="LC682" class="line" lang="diff"> </span>
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683
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<pre style="margin: 0;">-<span id="LC683" class="line" lang="diff"> /* check that actual number of sequences is equal to </span>
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684
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<pre style="margin: 0;">-<span id="LC684" class="line" lang="diff"> what the user gave */</span>
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685
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<pre style="margin: 0;">-<span id="LC685" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MA_SEQS_Ptr->val[0] != NULL && </span></span>
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686
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<pre style="margin: 0;">-<span id="LC686" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MA_SEQS_Ptr->val[0] != 0 &&</span></span>
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687
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<pre style="margin: 0;">-<span id="LC687" class="line" lang="diff"> block->num_sequences != atoi (MA_SEQS_Ptr->val))</span>
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688
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<pre style="margin: 0;">-<span id="LC688" class="line" lang="diff"> {</span>
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689
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<pre style="margin: 0;">-<span id="LC689" class="line" lang="diff"> printf("<H2>Warning</H2>\n");</span>
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690
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<pre style="margin: 0;">-<span id="LC690" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -719,7 +719,7 @@ void make_block()</span></span>
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691
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<pre style="margin: 0;">-<span id="LC691" class="line" lang="diff"> </span>
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692
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<pre style="margin: 0;">-<span id="LC692" class="line" lang="diff"> /* get block header data */</span>
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693
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<pre style="margin: 0;">-<span id="LC693" class="line" lang="diff"> </span>
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694
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<pre style="margin: 0;">-<span id="LC694" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (ID_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">-<span id="LC695" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (ID_Ptr->val[0] == 0)</span></span>
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696
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<pre style="margin: 0;">-<span id="LC696" class="line" lang="diff"> strcpy(block->id, "None") ;</span>
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697
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<pre style="margin: 0;">-<span id="LC697" class="line" lang="diff"> else</span>
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698
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<pre style="margin: 0;">-<span id="LC698" class="line" lang="diff"> strncpy(block->id,ID_Ptr->val, SMALL_BUFF_LENGTH) ;</span>
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699
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<pre style="margin: 0;">-<span id="LC699" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -727,7 +727,7 @@ void make_block()</span></span>
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700
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<pre style="margin: 0;">-<span id="LC700" class="line" lang="diff"> strcat(block->id, "; BLOCK") ;</span>
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701
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<pre style="margin: 0;">-<span id="LC701" class="line" lang="diff"> </span>
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702
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<pre style="margin: 0;">-<span id="LC702" class="line" lang="diff"> </span>
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703
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<pre style="margin: 0;">-<span id="LC703" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (AC_Ptr->val[0] == NULL) </span></span>
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704
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<pre style="margin: 0;">-<span id="LC704" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (AC_Ptr->val[0] == 0)</span></span>
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705
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<pre style="margin: 0;">-<span id="LC705" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC706" class="line" lang="diff"> strncpy(block->number, block->sequences[0].name, MAXAC) ;</span>
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<pre style="margin: 0;">-<span id="LC707" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC708" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -746,7 +746,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC709" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC710" class="line" lang="diff"> strcpy(block->ac,block->number) ;</span>
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<pre style="margin: 0;">-<span id="LC711" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC712" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MIN_DIST_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">-<span id="LC713" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MIN_DIST_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">-<span id="LC714" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC715" class="line" lang="diff"> j = 10000 ;</span>
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<pre style="margin: 0;">-<span id="LC716" class="line" lang="diff"> for(i=0; i<block->num_sequences; i++) </span>
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<pre style="margin: 0;">-<span id="LC717" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -758,7 +758,7 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC718" class="line" lang="diff"> block->ac, j) ;</span>
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<pre style="margin: 0;">-<span id="LC719" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC720" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC721" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MAX_DIST_Ptr->val[0] == NULL) </span></span>
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<pre style="margin: 0;">-<span id="LC722" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MAX_DIST_Ptr->val[0] == 0)</span></span>
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<pre style="margin: 0;">-<span id="LC723" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">-<span id="LC724" class="line" lang="diff"> j = 0 ;</span>
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<pre style="margin: 0;">-<span id="LC725" class="line" lang="diff"> for(i=0; i<block->num_sequences; i++) </span>
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<pre style="margin: 0;">-<span id="LC726" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -769,12 +769,12 @@ void make_block()</span></span>
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<pre style="margin: 0;">-<span id="LC727" class="line" lang="diff"> sprintf(block->ac, "%s,%d)",</span>
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<pre style="margin: 0;">-<span id="LC728" class="line" lang="diff"> block->ac, j) ;</span>
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<pre style="margin: 0;">-<span id="LC729" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC730" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (DE_Ptr->val[0] == NULL) </span></span>
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731
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<pre style="margin: 0;">-<span id="LC731" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (DE_Ptr->val[0] == 0)</span></span>
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732
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<pre style="margin: 0;">-<span id="LC732" class="line" lang="diff"> strcpy(block->de, "None") ;</span>
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<td class="diff-line-num old old_line" data-linenumber="733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
733
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<pre style="margin: 0;">-<span id="LC733" class="line" lang="diff"> else</span>
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734
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<pre style="margin: 0;">-<span id="LC734" class="line" lang="diff"> strncpy(block->de,DE_Ptr->val, SMALL_BUFF_LENGTH) ;</span>
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735
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<pre style="margin: 0;">-<span id="LC735" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="736" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
736
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<pre style="margin: 0;">-<span id="LC736" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (MA_METH_Ptr->val[0] != NULL) </span></span>
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737
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<pre style="margin: 0;">-<span id="LC737" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (MA_METH_Ptr->val[0] != 0)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="738" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
738
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<pre style="margin: 0;">-<span id="LC738" class="line" lang="diff"> strncpy(block->bl,MA_METH_Ptr->val, SMALL_BUFF_LENGTH-25) ;</span>
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<td class="diff-line-num old old_line" data-linenumber="739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
739
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC739" class="line" lang="diff"> else</span>
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740
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<pre style="margin: 0;">-<span id="LC740" class="line" lang="diff"> strcpy(block->bl,"Method unspecified") ;</span>
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<td class="diff-line-num old old_line" data-linenumber="741" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
741
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<pre style="margin: 0;">-<span id="LC741" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -881,7 +881,7 @@ void display_output()</span></span>
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<td class="diff-line-num old old_line" data-linenumber="742" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
742
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<pre style="margin: 0;">-<span id="LC742" class="line" lang="diff"> }</span>
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743
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<pre style="margin: 0;">-<span id="LC743" class="line" lang="diff"> </span>
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744
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<pre style="margin: 0;">-<span id="LC744" class="line" lang="diff"> </span>
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745
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<pre style="margin: 0;">-<span id="LC745" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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746
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<pre style="margin: 0;">-<span id="LC746" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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747
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<pre style="margin: 0;">-<span id="LC747" class="line" lang="diff"> </span>
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748
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<pre style="margin: 0;">-<span id="LC748" class="line" lang="diff"> printf("Content-type: text/html\n\n\n");</span>
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<td class="diff-line-num old old_line" data-linenumber="749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
749
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<pre style="margin: 0;">-<span id="LC749" class="line" lang="diff"> </span>
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750
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<pre style="margin: 0;">-<span id="LC750" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -918,6 +918,6 @@ void main(int argc, char *argv[]) {</span></span>
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751
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<pre style="margin: 0;">-<span id="LC751" class="line" lang="diff"> </span>
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752
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<pre style="margin: 0;">-<span id="LC752" class="line" lang="diff"> clean_temp_files() ;</span>
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753
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<pre style="margin: 0;">-<span id="LC753" class="line" lang="diff"> </span>
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754
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<pre style="margin: 0;">-<span id="LC754" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0) ;</span></span>
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755
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<pre style="margin: 0;">-<span id="LC755" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0) ;</span></span>
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756
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<pre style="margin: 0;">-<span id="LC756" class="line" lang="diff"> }</span>
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757
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<pre style="margin: 0;">-<span id="LC757" class="line" lang="diff"> </span>
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758
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<pre style="margin: 0;">-<span id="LC758" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/htmlize-codehop.c</span></span>
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759
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<pre style="margin: 0;">-<span id="LC759" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/htmlize-codehop.c</span></span>
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760
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<pre style="margin: 0;">-<span id="LC760" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -47,7 +47,7 @@ void insert_ohead();</span></span>
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761
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<pre style="margin: 0;">-<span id="LC761" class="line" lang="diff"> void condense();</span>
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762
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<pre style="margin: 0;">-<span id="LC762" class="line" lang="diff"> </span>
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763
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<pre style="margin: 0;">-<span id="LC763" class="line" lang="diff"> /*======================================================================*/</span>
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764
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<pre style="margin: 0;">-<span id="LC764" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(argc, argv)</span></span>
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765
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<pre style="margin: 0;">-<span id="LC765" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(argc, argv)</span></span>
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766
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<pre style="margin: 0;">-<span id="LC766" class="line" lang="diff"> int argc;</span>
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767
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<pre style="margin: 0;">-<span id="LC767" class="line" lang="diff"> char *argv[];</span>
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768
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<pre style="margin: 0;">-<span id="LC768" class="line" lang="diff"> {</span>
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769
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<pre style="margin: 0;">-<span id="LC769" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -250,7 +250,7 @@ char *argv[];</span></span>
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770
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<pre style="margin: 0;">-<span id="LC770" class="line" lang="diff"> printf("\n%d blocks, %d oligos processed\n", nblock, noligo);</span>
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771
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<pre style="margin: 0;">-<span id="LC771" class="line" lang="diff"> */</span>
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772
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<pre style="margin: 0;">-<span id="LC772" class="line" lang="diff"> </span>
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773
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<pre style="margin: 0;">-<span id="LC773" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
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774
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<pre style="margin: 0;">-<span id="LC774" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
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775
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<pre style="margin: 0;">-<span id="LC775" class="line" lang="diff"> } /* end of main */</span>
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776
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<pre style="margin: 0;">-<span id="LC776" class="line" lang="diff"> /*=========================================================================*/</span>
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777
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<pre style="margin: 0;">-<span id="LC777" class="line" lang="diff"> struct olist *make_olist()</span>
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778
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<pre style="margin: 0;">-<span id="LC778" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/htmlize-LAMA.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="779" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
779
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<pre style="margin: 0;">-<span id="LC779" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/htmlize-LAMA.c</span></span>
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780
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<pre style="margin: 0;">-<span id="LC780" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -13,6 +13,7 @@</span></span>
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781
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<pre style="margin: 0;">-<span id="LC781" class="line" lang="diff"> </span>
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782
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<pre style="margin: 0;">-<span id="LC782" class="line" lang="diff"> #include <stdlib.h></span>
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783
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<pre style="margin: 0;">-<span id="LC783" class="line" lang="diff"> #include <stdio.h></span>
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784
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<pre style="margin: 0;">-<span id="LC784" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <string.h></span></span>
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785
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<pre style="margin: 0;">-<span id="LC785" class="line" lang="diff"> </span>
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786
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<pre style="margin: 0;">-<span id="LC786" class="line" lang="diff"> </span>
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787
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<pre style="margin: 0;">-<span id="LC787" class="line" lang="diff"> #define TRUE 1</span>
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788
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<pre style="margin: 0;">-<span id="LC788" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/interpro.c</span></span>
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789
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<pre style="margin: 0;">-<span id="LC789" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/interpro.c</span></span>
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790
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<pre style="margin: 0;">-<span id="LC790" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -94,7 +94,7 @@ int main(argc, argv)</span></span>
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791
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<pre style="margin: 0;">-<span id="LC791" class="line" lang="diff"> else</span>
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792
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<pre style="margin: 0;">-<span id="LC792" class="line" lang="diff"> {</span>
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793
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<pre style="margin: 0;">-<span id="LC793" class="line" lang="diff"> printf("\nEnter name of interpro xml file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="794" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
794
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<pre style="margin: 0;">-<span id="LC794" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(iprfile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="795" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
795
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<pre style="margin: 0;">-<span id="LC795" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(iprfile, MAXNAME, stdin);</span></span>
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796
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<pre style="margin: 0;">-<span id="LC796" class="line" lang="diff"> }</span>
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797
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<pre style="margin: 0;">-<span id="LC797" class="line" lang="diff"> if ( (fip=fopen(iprfile, "r")) == NULL)</span>
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798
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<pre style="margin: 0;">-<span id="LC798" class="line" lang="diff"> {</span>
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799
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<pre style="margin: 0;">-<span id="LC799" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -108,7 +108,7 @@ int main(argc, argv)</span></span>
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800
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<pre style="margin: 0;">-<span id="LC800" class="line" lang="diff"> else</span>
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801
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<pre style="margin: 0;">-<span id="LC801" class="line" lang="diff"> {</span>
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802
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<pre style="margin: 0;">-<span id="LC802" class="line" lang="diff"> printf("\nEnter name of interpro entry or all : ");</span>
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803
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<pre style="margin: 0;">-<span id="LC803" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(iprname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="804" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
804
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<pre style="margin: 0;">-<span id="LC804" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(iprname, MAXAC, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="805" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
805
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<pre style="margin: 0;">-<span id="LC805" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="806" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
806
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<pre style="margin: 0;">-<span id="LC806" class="line" lang="diff"> if (!strlen(iprname)) strcpy(iprname, "all");</span>
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807
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<pre style="margin: 0;">-<span id="LC807" class="line" lang="diff"> All = NO;</span>
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808
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<pre style="margin: 0;">-<span id="LC808" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/LAMA.c</span></span>
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809
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<pre style="margin: 0;">-<span id="LC809" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/LAMA.c</span></span>
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810
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<pre style="margin: 0;">-<span id="LC810" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -400,12 +400,12 @@ double *Z_cutoff ;</span></span>
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811
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<pre style="margin: 0;">-<span id="LC811" class="line" lang="diff"> else /* get input file(s) interactively */</span>
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<td class="diff-line-num old old_line" data-linenumber="812" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
812
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<pre style="margin: 0;">-<span id="LC812" class="line" lang="diff"> {</span>
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813
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<pre style="margin: 0;">-<span id="LC813" class="line" lang="diff"> printf("\nEnter name of a file with blocks or block matrices: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="814" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
814
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<pre style="margin: 0;">-<span id="LC814" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname[0]);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="815" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
815
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<pre style="margin: 0;">-<span id="LC815" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname[0], MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="816" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
816
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<pre style="margin: 0;">-<span id="LC816" class="line" lang="diff"> </span>
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817
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<pre style="margin: 0;">-<span id="LC817" class="line" lang="diff"> printf("\nThe blocks/matrices in this file will be intercompared.\n");</span>
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818
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<pre style="margin: 0;">-<span id="LC818" class="line" lang="diff"> printf("If you wish to compare them against blocks/matrices in\n");</span>
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<td class="diff-line-num old old_line" data-linenumber="819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
819
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<pre style="margin: 0;">-<span id="LC819" class="line" lang="diff"> printf("another file enter that file name (else just hit <ENTER>).\n");</span>
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<td class="diff-line-num old old_line" data-linenumber="820" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
820
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<pre style="margin: 0;">-<span id="LC820" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname[1]);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="821" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
821
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<pre style="margin: 0;">-<span id="LC821" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname[1], MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="822" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
822
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<pre style="margin: 0;">-<span id="LC822" class="line" lang="diff"> </span>
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823
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<pre style="margin: 0;">-<span id="LC823" class="line" lang="diff"> if (bdbname[1][0] == '\0') *inpfiles = 1 ;</span>
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<td class="diff-line-num old old_line" data-linenumber="824" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
824
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC824" class="line" lang="diff"> else *inpfiles = 2 ;</span>
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<td class="diff-line-num old old_line" data-linenumber="825" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
825
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<pre style="margin: 0;">-<span id="LC825" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -426,7 +426,7 @@ double *Z_cutoff ;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="826" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
826
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<pre style="margin: 0;">-<span id="LC826" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="827" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
827
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC827" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="828" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
828
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC828" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
829
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC829" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="830" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
830
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC830" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="831" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
831
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<pre style="margin: 0;">-<span id="LC831" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC832" class="line" lang="diff"> </span>
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833
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<pre style="margin: 0;">-<span id="LC833" class="line" lang="diff"> if ( (*out=fopen(outname, "w")) == NULL)</span>
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834
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<pre style="margin: 0;">-<span id="LC834" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/LAMA_search.c</span></span>
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835
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<pre style="margin: 0;">-<span id="LC835" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/LAMA_search.c</span></span>
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836
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<pre style="margin: 0;">-<span id="LC836" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -281,7 +281,7 @@ void write_Qblock()</span></span>
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837
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<pre style="margin: 0;">-<span id="LC837" class="line" lang="diff"> </span>
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838
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<pre style="margin: 0;">-<span id="LC838" class="line" lang="diff"> </span>
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839
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<pre style="margin: 0;">-<span id="LC839" class="line" lang="diff"> /* check that a block was specified */</span>
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840
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<pre style="margin: 0;">-<span id="LC840" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Qblock_Ptr->val[0] == NULL) </span></span>
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841
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<pre style="margin: 0;">-<span id="LC841" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (Qblock_Ptr->val[0] == 0)</span></span>
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842
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<pre style="margin: 0;">-<span id="LC842" class="line" lang="diff"> {</span>
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843
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<pre style="margin: 0;">-<span id="LC843" class="line" lang="diff"> printf("<H1>Search Error</H1>\n");</span>
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844
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<pre style="margin: 0;">-<span id="LC844" class="line" lang="diff"> printf("You need to enter a block to search with by writing or pasting a block in the query block window.<P>\n");</span>
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845
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<pre style="margin: 0;">-<span id="LC845" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -296,7 +296,7 @@ void write_Qblock()</span></span>
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846
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<pre style="margin: 0;">-<span id="LC846" class="line" lang="diff"> </span>
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847
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<pre style="margin: 0;">-<span id="LC847" class="line" lang="diff"> </span>
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848
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<pre style="margin: 0;">-<span id="LC848" class="line" lang="diff"> /* if block was pasted/written - */</span>
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849
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<pre style="margin: 0;">-<span id="LC849" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (Qblock_Ptr->val[0] != NULL)</span></span>
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850
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<pre style="margin: 0;">-<span id="LC850" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (Qblock_Ptr->val[0] != 0)</span></span>
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851
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<pre style="margin: 0;">-<span id="LC851" class="line" lang="diff"> {</span>
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852
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<pre style="margin: 0;">-<span id="LC852" class="line" lang="diff"> </span>
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853
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<pre style="margin: 0;">-<span id="LC853" class="line" lang="diff"> /* open up the block file to write to */</span>
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<td class="diff-line-num old old_line" data-linenumber="854" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
854
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<pre style="margin: 0;">-<span id="LC854" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -579,7 +579,7 @@ void queue_to_mail()</span></span>
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855
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<pre style="margin: 0;">-<span id="LC855" class="line" lang="diff"> /* mail the person the results */</span>
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<td class="diff-line-num old old_line" data-linenumber="856" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
856
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<pre style="margin: 0;">-<span id="LC856" class="line" lang="diff"> /* NOTE: need to echo the header lines for the LAMA output :P */</span>
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857
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<pre style="margin: 0;">-<span id="LC857" class="line" lang="diff"> /* NOTE: all this should need to do is to cat the ouput file. */</span>
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<td class="diff-line-num old old_line" data-linenumber="858" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
858
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<pre style="margin: 0;">-<span id="LC858" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sprintf(buf, "%s %s '(cat %s) | /usr/bin/mailx -s \"LAMA Results\" -r \"blocks\@fhcrc.org\" %s'", add_queue_entry, LAMA_queue, LAMA_output, Address_Ptr->val);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="859" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
859
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<pre style="margin: 0;">-<span id="LC859" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sprintf(buf, "%s %s '(cat %s) | /usr/bin/mailx -s \"LAMA Results\" -r \"blocks@fhcrc.org\" %s'", add_queue_entry, LAMA_queue, LAMA_output, Address_Ptr->val);</span></span>
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860
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<pre style="margin: 0;">-<span id="LC860" class="line" lang="diff"> system(buf);</span>
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<td class="diff-line-num old old_line" data-linenumber="861" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
861
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<pre style="margin: 0;">-<span id="LC861" class="line" lang="diff"> </span>
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862
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<pre style="margin: 0;">-<span id="LC862" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="863" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
863
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<pre style="margin: 0;">-<span id="LC863" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -666,7 +666,7 @@ printf("%s=%d\n", buf, returnCode);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="864" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
864
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<pre style="margin: 0;">-<span id="LC864" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="865" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
865
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<pre style="margin: 0;">-<span id="LC865" class="line" lang="diff"> } /* end of run Cyrca */</span>
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866
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<pre style="margin: 0;">-<span id="LC866" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="867" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
867
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<pre style="margin: 0;">-<span id="LC867" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(int argc, char *argv[]) {</span></span>
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<td class="diff-line-num old old_line" data-linenumber="868" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
868
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<pre style="margin: 0;">-<span id="LC868" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(int argc, char *argv[]) {</span></span>
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869
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<pre style="margin: 0;">-<span id="LC869" class="line" lang="diff"> </span>
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870
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<pre style="margin: 0;">-<span id="LC870" class="line" lang="diff"> printf("Content-type: text/html\n\n\n");</span>
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<td class="diff-line-num old old_line" data-linenumber="871" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
871
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<pre style="margin: 0;">-<span id="LC871" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="872" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
872
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<pre style="margin: 0;">-<span id="LC872" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -715,5 +715,5 @@ void main(int argc, char *argv[]) {</span></span>
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873
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<pre style="margin: 0;">-<span id="LC873" class="line" lang="diff"> </span>
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874
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<pre style="margin: 0;">-<span id="LC874" class="line" lang="diff"> clean_temp_files() ;</span>
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875
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<pre style="margin: 0;">-<span id="LC875" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="876" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
876
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<pre style="margin: 0;">-<span id="LC876" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0) ;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="877" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
877
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<pre style="margin: 0;">-<span id="LC877" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0) ;</span></span>
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878
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<pre style="margin: 0;">-<span id="LC878" class="line" lang="diff"> }</span>
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879
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<pre style="margin: 0;">-<span id="LC879" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/lisblk.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="880" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
880
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<pre style="margin: 0;">-<span id="LC880" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/lisblk.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="881" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
881
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<pre style="margin: 0;">-<span id="LC881" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -33,7 +33,7 @@ char Pros[FNAMELEN];</span></span>
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882
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<pre style="margin: 0;">-<span id="LC882" class="line" lang="diff"> char Title[MAXLINE];</span>
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<td class="diff-line-num old old_line" data-linenumber="883" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
883
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<pre style="margin: 0;">-<span id="LC883" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="884" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
884
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<pre style="margin: 0;">-<span id="LC884" class="line" lang="diff"> /*======================================================================*/</span>
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<td class="diff-line-num old old_line" data-linenumber="885" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
885
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<pre style="margin: 0;">-<span id="LC885" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-void main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="886" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
886
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<pre style="margin: 0;">-<span id="LC886" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="887" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
887
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<pre style="margin: 0;">-<span id="LC887" class="line" lang="diff"> int argc;</span>
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<td class="diff-line-num old old_line" data-linenumber="888" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
888
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC888" class="line" lang="diff"> char *argv[];</span>
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<td class="diff-line-num old old_line" data-linenumber="889" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
889
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<pre style="margin: 0;">-<span id="LC889" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="890" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
890
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<pre style="margin: 0;">-<span id="LC890" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -53,7 +53,7 @@ char *argv[];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="891" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
891
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<pre style="margin: 0;">-<span id="LC891" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="892" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
892
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<pre style="margin: 0;">-<span id="LC892" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="893" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
893
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<pre style="margin: 0;">-<span id="LC893" class="line" lang="diff"> printf("\nEnter name of file containing list of sequences: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="894" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
894
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<pre style="margin: 0;">-<span id="LC894" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(lisfile);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="895" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
895
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<pre style="margin: 0;">-<span id="LC895" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(lisfile, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="896" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
896
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<pre style="margin: 0;">-<span id="LC896" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="897" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
897
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<pre style="margin: 0;">-<span id="LC897" class="line" lang="diff"> if ( (flis=fopen(lisfile, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="898" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
898
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC898" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="899" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
899
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC899" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -69,7 +69,7 @@ char *argv[];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="900" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
900
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<pre style="margin: 0;">-<span id="LC900" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="901" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
901
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC901" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="902" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
902
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC902" class="line" lang="diff"> printf("\nEnter name of block file: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="903" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
903
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC903" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blkfile);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="904" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
904
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC904" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blkfile, FNAMELEN, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="905" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
905
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC905" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="906" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
906
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC906" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="907" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
907
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC907" class="line" lang="diff"> if ((fblk=fopen(blkfile, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="908" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
908
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC908" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -85,7 +85,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="909" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
909
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC909" class="line" lang="diff"> if ((fblk=fopen(blkfile, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="910" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
910
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC910" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="911" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
911
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC911" class="line" lang="diff"> printf("\nEnter name of block file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="912" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
912
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC912" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blkfile);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="913" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
913
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC913" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blkfile, FNAMELEN, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="914" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
914
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC914" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="915" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
915
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC915" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="916" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
916
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC916" class="line" lang="diff"> if (fblk == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
917
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC917" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -147,7 +147,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
918
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC918" class="line" lang="diff"> fclose(fout);</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="919" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
919
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC919" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
920
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC920" class="line" lang="diff"> printf("\n");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="921" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
921
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC921" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- exit(0);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="922" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
922
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC922" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return(0);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="923" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
923
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC923" class="line" lang="diff"> } /* end of main */</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="924" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
924
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC924" class="line" lang="diff"> /*================================================================*/</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="925" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
925
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC925" class="line" lang="diff"> int flag_ids(block, ids)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="926" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
926
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC926" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/mablock.c</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="927" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
927
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC927" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/mablock.c</span></span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="928" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
928
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC928" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -102,7 +102,8 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="929" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
929
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC929" class="line" lang="diff"> {</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="930" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
930
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC930" class="line" lang="diff"> FILE *ifp, *bfp, *sfp;</span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="931" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
931
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC931" class="line" lang="diff"> Sequence *seqs[MAXSEQ];</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="932" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
932
</td>
<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC932" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char ctemp[MAXNAME], bdbname[MAXNAME], outtype[10], *ptr;</span></span>
</pre>
</td>
</tr>
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<td class="diff-line-num old old_line" data-linenumber="933" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
933
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<pre style="margin: 0;">-<span id="LC933" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define MABLOCK_OUTTYPELEN 10</span></span>
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934
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<pre style="margin: 0;">-<span id="LC934" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char ctemp[MAXNAME], bdbname[MAXNAME], outtype[MABLOCK_OUTTYPELEN], *ptr;</span></span>
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935
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<pre style="margin: 0;">-<span id="LC935" class="line" lang="diff"> int db_type, seq_type, nseq, i, bflag, ftype;</span>
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<td class="diff-line-num old old_line" data-linenumber="936" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
936
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<pre style="margin: 0;">-<span id="LC936" class="line" lang="diff"> struct blocks_list *blocks;</span>
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<td class="diff-line-num old old_line" data-linenumber="937" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
937
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<pre style="margin: 0;">-<span id="LC937" class="line" lang="diff"> Block *block;</span>
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<td class="diff-line-num old old_line" data-linenumber="938" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
938
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC938" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -127,7 +128,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="939" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
939
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC939" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="940" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
940
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<pre style="margin: 0;">-<span id="LC940" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="941" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
941
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC941" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="942" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
942
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC942" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="943" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
943
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC943" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( bdbname, MAXNAME, stdin );</span></span>
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<td class="diff-line-num old old_line" data-linenumber="944" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
944
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<pre style="margin: 0;">-<span id="LC944" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="945" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
945
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<pre style="margin: 0;">-<span id="LC945" class="line" lang="diff"> if ( (ifp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="946" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
946
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<pre style="margin: 0;">-<span id="LC946" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="947" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
947
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<pre style="margin: 0;">-<span id="LC947" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -157,7 +158,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="948" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
948
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<pre style="margin: 0;">-<span id="LC948" class="line" lang="diff"> else</span>
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949
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<pre style="margin: 0;">-<span id="LC949" class="line" lang="diff"> {</span>
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950
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<pre style="margin: 0;">-<span id="LC950" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="951" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
951
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<pre style="margin: 0;">-<span id="LC951" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(OutName);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="952" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
952
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<pre style="margin: 0;">-<span id="LC952" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( OutName, MAXNAME, stdin );</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="953" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
953
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<pre style="margin: 0;">-<span id="LC953" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="954" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
954
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<pre style="margin: 0;">-<span id="LC954" class="line" lang="diff"> strcpy(ctemp, OutName); strcat(ctemp, ".blks");</span>
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<td class="diff-line-num old old_line" data-linenumber="955" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
955
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<pre style="margin: 0;">-<span id="LC955" class="line" lang="diff"> if ( (bfp=fopen(ctemp, "w")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="956" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
956
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC956" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -177,7 +178,7 @@ int main(argc, argv)</span></span>
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957
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<pre style="margin: 0;">-<span id="LC957" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">-<span id="LC958" class="line" lang="diff"> {</span>
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959
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<pre style="margin: 0;">-<span id="LC959" class="line" lang="diff"> printf("\nEnter type of output file [B=blocks|F=fasta]: ");</span>
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960
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<pre style="margin: 0;">-<span id="LC960" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outtype);</span></span>
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961
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<pre style="margin: 0;">-<span id="LC961" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets( outtype, MABLOCK_OUTTYPELEN, stdin );</span></span>
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962
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<pre style="margin: 0;">-<span id="LC962" class="line" lang="diff"> }</span>
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963
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<pre style="margin: 0;">-<span id="LC963" class="line" lang="diff"> if (outtype[0] == 'F' || outtype[0] == 'f') ftype = 1;</span>
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964
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<pre style="margin: 0;">-<span id="LC964" class="line" lang="diff"> /* ------------4th arg = optional min trimming size--------------------*/</span>
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965
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/Makefile.Linux</span></span>
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966
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/Makefile.Linux</span></span>
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967
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -44,19 +44,25 @@</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2481,410 +1521,6 @@ Description: * replaced gets() with fgets()</td>
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2481
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1521
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<pre style="margin: 0;"> <span id="LC1521" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-blk2mot.o: ../include/sequences.h ../include/matrix.h ../include/pattern.h</span></span>
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2482
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1522
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<pre style="margin: 0;"> <span id="LC1522" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-blk2mot.o: ../include/convert.h ../include/frequency.h ../include/files.h</span></span>
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2483
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1523
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<pre style="margin: 0;"> <span id="LC1523" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-blk2mot.o: ../include/protomat.h</span></span>
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2484
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<pre style="margin: 0;">-<span id="LC2484" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/makelogob.c</span></span>
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2485
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<pre style="margin: 0;">-<span id="LC2485" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/makelogob.c</span></span>
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2486
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<pre style="margin: 0;">-<span id="LC2486" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -797,7 +797,7 @@ waveparam **w;</span></span>
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2487
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<pre style="margin: 0;">-<span id="LC2487" class="line" lang="diff"> *w = NULL;</span>
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2488
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<pre style="margin: 0;">-<span id="LC2488" class="line" lang="diff"> return;</span>
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2489
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<pre style="margin: 0;">-<span id="LC2489" class="line" lang="diff"> }</span>
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2490
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<pre style="margin: 0;">-<span id="LC2490" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- *w = (waveparam *)Malloc(sizeof(waveparam));</span></span>
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2491
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<pre style="margin: 0;">-<span id="LC2491" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *w = (waveparam *)malloc(sizeof(waveparam));</span></span>
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2492
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<pre style="margin: 0;">-<span id="LC2492" class="line" lang="diff"> p = *w;</span>
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2493
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<pre style="margin: 0;">-<span id="LC2493" class="line" lang="diff"> while (!BUFEOF(afile->f)) {</span>
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2494
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<pre style="margin: 0;">-<span id="LC2494" class="line" lang="diff"> fscanf(afile->f, "%c%*[^\n]", &p->extreme);</span>
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2495
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<pre style="margin: 0;">-<span id="LC2495" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -831,7 +831,7 @@ waveparam **w;</span></span>
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2496
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<pre style="margin: 0;">-<span id="LC2496" class="line" lang="diff"> }</span>
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2497
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<pre style="margin: 0;">-<span id="LC2497" class="line" lang="diff"> }</span>
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2498
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<pre style="margin: 0;">-<span id="LC2498" class="line" lang="diff"> if (!BUFEOF(afile->f)) {</span>
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2499
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<pre style="margin: 0;">-<span id="LC2499" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- p->next = (waveparam *)Malloc(sizeof(waveparam));</span></span>
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2500
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<pre style="margin: 0;">-<span id="LC2500" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ p->next = (waveparam *)malloc(sizeof(waveparam));</span></span>
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2501
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<pre style="margin: 0;">-<span id="LC2501" class="line" lang="diff"> p = p->next;</span>
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2502
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<pre style="margin: 0;">-<span id="LC2502" class="line" lang="diff"> } else</span>
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2503
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<pre style="margin: 0;">-<span id="LC2503" class="line" lang="diff"> p->next = NULL;</span>
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2504
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<pre style="margin: 0;">-<span id="LC2504" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2007,7 +2007,7 @@ strings **thestrings;</span></span>
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2505
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<pre style="margin: 0;">-<span id="LC2505" class="line" lang="diff"> return;</span>
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2506
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<pre style="margin: 0;">-<span id="LC2506" class="line" lang="diff"> }</span>
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2507
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<pre style="margin: 0;">-<span id="LC2507" class="line" lang="diff"> </span>
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2508
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<pre style="margin: 0;">-<span id="LC2508" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- *thestrings = (strings *)Malloc(sizeof(strings));</span></span>
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2509
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<pre style="margin: 0;">-<span id="LC2509" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ *thestrings = (strings *)malloc(sizeof(strings));</span></span>
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2510
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<pre style="margin: 0;">-<span id="LC2510" class="line" lang="diff"> stringspot = *thestrings;</span>
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2511
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<pre style="margin: 0;">-<span id="LC2511" class="line" lang="diff"> for (n = 1; n <= numberstrings; n++) {</span>
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2512
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<pre style="margin: 0;">-<span id="LC2512" class="line" lang="diff"> if (BUFEOF(theplace->f)) {</span>
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2513
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<pre style="margin: 0;">-<span id="LC2513" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2023,7 +2023,7 @@ strings **thestrings;</span></span>
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2514
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<pre style="margin: 0;">-<span id="LC2514" class="line" lang="diff"> halt();</span>
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2515
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<pre style="margin: 0;">-<span id="LC2515" class="line" lang="diff"> }</span>
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2516
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<pre style="margin: 0;">-<span id="LC2516" class="line" lang="diff"> if (n < numberstrings) {</span>
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2517
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<pre style="margin: 0;">-<span id="LC2517" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- stringspot->next = (strings *)Malloc(sizeof(strings));</span></span>
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2518
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<pre style="margin: 0;">-<span id="LC2518" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ stringspot->next = (strings *)malloc(sizeof(strings));</span></span>
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2519
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<pre style="margin: 0;">-<span id="LC2519" class="line" lang="diff"> stringspot = stringspot->next;</span>
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<td class="diff-line-num old old_line" data-linenumber="2520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2520
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2520" class="line" lang="diff"> } else</span>
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2521
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2521" class="line" lang="diff"> stringspot->next = NULL;</span>
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<td class="diff-line-num old old_line" data-linenumber="2522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2522
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2522" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/matrix_logob.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2523
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2523" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/matrix_logob.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2524
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2524" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -331,7 +331,7 @@ FILE **bfp ;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2525" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2525
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2525" class="line" lang="diff"> else </span>
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<td class="diff-line-num old old_line" data-linenumber="2526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2526
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2526" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2527
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2527" class="line" lang="diff"> printf("\nEnter name of BLOCK or MATRIX file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2528
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2528" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2529
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2529" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2530
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2530" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2531
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2531" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="2532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2532
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2532" class="line" lang="diff"> /* Read stdin if the filename starts with '-' */</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2533
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2533" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -347,7 +347,7 @@ FILE **bfp ;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2534
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2534" class="line" lang="diff"> else /* get input file(s) interactively */</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2535
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2535" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2536
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2536" class="line" lang="diff"> printf("\nEnter AC in %s or - to make logos for all: ", bdbname);</span>
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<td class="diff-line-num old old_line" data-linenumber="2537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2537
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2537" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(blockAC);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2538" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2538
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2538" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(blockAC, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2539
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2539" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2540" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2540
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2540" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2541" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2541
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2541" class="line" lang="diff"> /* ------------3rd arg = file name suffix ------------------------------JGH*/</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2542" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2542
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2542" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -356,7 +356,7 @@ FILE **bfp ;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2543" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2543
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2543" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2544
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2544" class="line" lang="diff"> {</span>
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2545
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2545" class="line" lang="diff"> printf("\nEnter file name suffix: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2546" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2546
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2546" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(suffix);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2547
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2547" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(suffix, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2548" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2548
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2548" class="line" lang="diff"> printf("Logos will be written to logo.%s\n", suffix);</span>
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<td class="diff-line-num old old_line" data-linenumber="2549" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2549
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2549" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2550" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2550
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2550" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="2551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2551
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2551" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -588,7 +588,7 @@ char *outname;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2552" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2552
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2552" class="line" lang="diff"> printf(" after viewing you can also choose to print,\n") ;</span>
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<td class="diff-line-num old old_line" data-linenumber="2553" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2553
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2553" class="line" lang="diff"> printf(" P to print logo (%s %s).)\n", PSprint, outname) ;</span>
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<td class="diff-line-num old old_line" data-linenumber="2554" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2554
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2554" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2555" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2555
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2555" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ans) ;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2556
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2556" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ans, 2, stdin) ;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2557" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2557
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2557" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2558" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2558
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2558" class="line" lang="diff"> switch (toupper(ans[0]))</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2559
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2559" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2560
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2560" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/narrow.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2561
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2561" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/narrow.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2562" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2562
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2562" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -93,7 +93,7 @@ char *argv[];</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2563" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2563
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2563" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2564
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2564" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2565
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2565" class="line" lang="diff"> printf("\nEnter type of input file (Block|Frequencies|Weights): ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2566
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2566" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2567
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2567" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, 80, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2568" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2568
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2568" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2569
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2569" class="line" lang="diff"> if (ctemp[0] == 'F' || ctemp[0] == 'f') type = 1; </span>
</pre>
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2570
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<pre style="margin: 0;">-<span id="LC2570" class="line" lang="diff"> else if (ctemp[0] == 'W' || ctemp[0] == 'w') type = 2; </span>
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2571
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<pre style="margin: 0;">-<span id="LC2571" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -104,7 +104,7 @@ char *argv[];</span></span>
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2572
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<pre style="margin: 0;">-<span id="LC2572" class="line" lang="diff"> else</span>
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2573
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2573" class="line" lang="diff"> {</span>
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2574
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2574" class="line" lang="diff"> printf("\nEnter name of input file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2575" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2575
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2575" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(chkname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2576
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2576" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(chkname, 80, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2577
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2577" class="line" lang="diff"> }</span>
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2578
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<pre style="margin: 0;">-<span id="LC2578" class="line" lang="diff"> if ( (chk=fopen(chkname, "r")) == NULL)</span>
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2579
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<pre style="margin: 0;">-<span id="LC2579" class="line" lang="diff"> {</span>
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2580
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<pre style="margin: 0;">-<span id="LC2580" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/oligo_melt.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2581
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2581" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/oligo_melt.c</span></span>
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2582
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<pre style="margin: 0;">-<span id="LC2582" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -75,7 +75,7 @@ int main(argc, argv)</span></span>
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2583
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<pre style="margin: 0;">-<span id="LC2583" class="line" lang="diff"> else</span>
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2584
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<pre style="margin: 0;">-<span id="LC2584" class="line" lang="diff"> {</span>
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2585
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2585" class="line" lang="diff"> printf("Enter name of file containing oligos: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2586
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<pre style="margin: 0;">-<span id="LC2586" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(fname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2587
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<pre style="margin: 0;">-<span id="LC2587" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(fname, 80, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2588" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2588
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<pre style="margin: 0;">-<span id="LC2588" class="line" lang="diff"> }</span>
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2589
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<pre style="margin: 0;">-<span id="LC2589" class="line" lang="diff"> if (!strlen(fname) ) inpf = stdin;</span>
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<td class="diff-line-num old old_line" data-linenumber="2590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2590
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<pre style="margin: 0;">-<span id="LC2590" class="line" lang="diff"> else if ((inpf=fopen(fname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="2591" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2591
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<pre style="margin: 0;">-<span id="LC2591" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/papssm.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2592" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2592
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<pre style="margin: 0;">-<span id="LC2592" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/papssm.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2593" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2593
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<pre style="margin: 0;">-<span id="LC2593" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -163,7 +163,7 @@ struct steve {</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2594
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<pre style="margin: 0;">-<span id="LC2594" class="line" lang="diff"> </span>
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2595
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2595" class="line" lang="diff"> int read_cf();</span>
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2596
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2596" class="line" lang="diff"> int load_frequencies();</span>
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<td class="diff-line-num old old_line" data-linenumber="2597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2597
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2597" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-double read_freq();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2598
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2598" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+static double read_freq();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2599" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2599
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2599" class="line" lang="diff"> void load_subst();</span>
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<td class="diff-line-num old old_line" data-linenumber="2600" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2600
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2600" class="line" lang="diff"> double nrgamma();</span>
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<td class="diff-line-num old old_line" data-linenumber="2601" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2601
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2601" class="line" lang="diff"> double addlogs();</span>
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<td class="diff-line-num old old_line" data-linenumber="2602" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2602
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2602" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -250,7 +250,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2603" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2603
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2603" class="line" lang="diff"> else</span>
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<td class="diff-line-num old old_line" data-linenumber="2604" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2604
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2604" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2605" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2605
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2605" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2606" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2606
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2606" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(cfname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2607" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2607
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2607" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(cfname, FNAMELEN, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2608" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2608
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2608" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2609
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2609" class="line" lang="diff"> if ( (cfp=fopen(cfname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2610" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2610
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2610" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2611" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2611
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2611" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/prints2blocks.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2612" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2612
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2612" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/prints2blocks.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2613" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2613
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2613" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -63,7 +63,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2614" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2614
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2614" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2615" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2615
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2615" class="line" lang="diff"> printf(</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2616" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2616
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2616" class="line" lang="diff"> "\nEnter name of input file (Prints protein motifs database): ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2617" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2617
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2617" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(inpfname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2618
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2618" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(inpfname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2619
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2619" class="line" lang="diff"> }</span>
</pre>
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2620
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<pre style="margin: 0;">-<span id="LC2620" class="line" lang="diff"> </span>
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2621
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<pre style="margin: 0;">-<span id="LC2621" class="line" lang="diff"> if ( (inpf=fopen(inpfname, "r")) == NULL)</span>
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2622
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<pre style="margin: 0;">-<span id="LC2622" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/protomat.c</span></span>
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2623
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2623" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/protomat.c</span></span>
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2624
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2624" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -438,7 +438,8 @@ char *line;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2625" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2625
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2625" class="line" lang="diff"> char *dir_unix(line)</span>
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<td class="diff-line-num old old_line" data-linenumber="2626" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2626
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2626" class="line" lang="diff"> char *line;</span>
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<td class="diff-line-num old old_line" data-linenumber="2627" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2627
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2627" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="2628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2628
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2628" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char tname[FNAMELEN], mem[MAXLINE], pros[FNAMELEN], *ptr;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2629" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2629
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2629" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char tname[FNAMELEN], mem[MAXLINE], *ptr;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2630" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2630
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2630" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ static char pros[FNAMELEN];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2631" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2631
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2631" class="line" lang="diff"> int test;</span>
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2632
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<pre style="margin: 0;">-<span id="LC2632" class="line" lang="diff"> DIR *dp;</span>
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<td class="diff-line-num old old_line" data-linenumber="2633" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2633
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<pre style="margin: 0;">-<span id="LC2633" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="2634" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2634
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<pre style="margin: 0;">-<span id="LC2634" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/protxblk.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2635" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2635
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2635" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/protxblk.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2636" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2636
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2636" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -37,7 +37,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2637" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2637
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2637" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2638" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2638
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2638" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2639" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2639
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2639" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2640
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<pre style="margin: 0;">-<span id="LC2640" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2641" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2641
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2641" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2642" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2642
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2642" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2643" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2643
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2643" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="2644" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2644
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<pre style="margin: 0;">-<span id="LC2644" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2645" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2645
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2645" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -50,7 +50,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2646" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2646
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2646" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2647" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2647
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2647" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2648" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2648
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2648" class="line" lang="diff"> printf("\nEnter name of output file: ");</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2649" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2649
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2649" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2650" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2650
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2650" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2651" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2651
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2651" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2652" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2652
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2652" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2653" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2653
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2653" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2654" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2654
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2654" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/pssmBL.c</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2655" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2655
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2655" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/pssmBL.c</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2656" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2656
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2656" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -29,7 +29,7 @@ int main(argc, argv)</span></span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2657" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2657
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2657" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2658" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2658
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2658" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2659" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2659
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2659" class="line" lang="diff"> printf("\nEnter name of pssmdist.dat file: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2660" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2660
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2660" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(pssmname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2661" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2661
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2661" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(pssmname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2662" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2662
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2662" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2663" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2663
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2663" class="line" lang="diff"> if ( (pfp=fopen(pssmname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2664" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2664
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2664" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2665" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2665
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2665" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -42,7 +42,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2666" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2666
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2666" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2667" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2667
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2667" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2668" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2668
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2668" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2669" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2669
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2669" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
</td>
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2670
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2670" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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2671
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2671" class="line" lang="diff"> }</span>
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2672
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2672" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
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2673
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2673" class="line" lang="diff"> {</span>
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2674
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2674" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -55,7 +55,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2675" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2675
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2675" class="line" lang="diff"> else</span>
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2676
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2676" class="line" lang="diff"> {</span>
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<td class="diff-line-num old old_line" data-linenumber="2677" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2677
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2677" class="line" lang="diff"> printf("\nEnter name of new blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2678" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2678
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2678" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2679" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2679
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2679" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2680" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2680
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2680" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="2681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2681
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2681" class="line" lang="diff"> if ( (ofp=fopen(conname, "a")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="2682" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2682
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<pre style="margin: 0;">-<span id="LC2682" class="line" lang="diff"> {</span>
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2683
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<pre style="margin: 0;">-<span id="LC2683" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/pssmdist.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2684" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2684
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2684" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/pssmdist.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2685" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2685
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2685" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -81,7 +81,7 @@ struct score_struct {</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2686" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2686
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2686" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2687" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2687
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2687" class="line" lang="diff"> int compute();</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2688" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2688
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2688" class="line" lang="diff"> int load_freqs();</span>
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<td class="diff-line-num old old_line" data-linenumber="2689" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2689
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2689" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-double read_a_freq();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2690" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2690
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2690" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+static double read_a_freq();</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2691" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2691
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2691" class="line" lang="diff"> void fix_freqs();</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2692" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2692
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2692" class="line" lang="diff"> int count_tps();</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2693" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2693
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2693" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="2694" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2694
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2694" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -113,7 +113,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2695" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2695
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2695" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2696" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2696
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2696" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2697
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2697" class="line" lang="diff"> printf("\nEnter name of matrix database: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2698" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2698
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2698" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(mname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2699" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2699
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2699" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(mname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2700" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2700
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2700" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2701" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2701
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2701" class="line" lang="diff"> if ( (mfp=fopen(mname, "r")) == NULL)</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2702" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2702
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2702" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2703" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2703
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2703" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -126,7 +126,7 @@ int main(argc, argv)</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2704" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2704
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2704" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2705" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2705
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2705" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2706" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2706
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2706" class="line" lang="diff"> printf("\nEnter name of observed frequencies database: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2707" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2707
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2707" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(oname);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2708" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2708
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2708" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(oname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2709" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2709
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2709" class="line" lang="diff"> }</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2710" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2710
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2710" class="line" lang="diff"> if ( (ofp=fopen(oname, "r")) == NULL)</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2711" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2711
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2711" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2712
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2712" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -138,7 +138,7 @@ int main(argc, argv)</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2713" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2713
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2713" class="line" lang="diff"> else</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2714
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2714" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2715" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2715
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2715" class="line" lang="diff"> printf("\nEnter name of frequency file: ");</span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2716
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2716" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(fname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2717
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2717" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(fname, MAXNAME,stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2718" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2718
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2718" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2719
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2719" class="line" lang="diff"> if ( (ffp=fopen(fname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2720" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2720
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2720" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2721
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2721" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -155,7 +155,7 @@ int main(argc, argv)</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2722
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2722" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2723" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2723
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2723" class="line" lang="diff"> printf("\nEnter number of sequences in a typical search [%.0f]: ",</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2724
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2724" class="line" lang="diff"> Search);</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2725
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2725" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2726
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2726" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2727" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2727
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2727" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2728" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2728
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2728" class="line" lang="diff"> if (strlen(ctemp)) Search = atof(ctemp);</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2729
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2729" class="line" lang="diff"> /* ------------5th arg = #aas in a search--------------------*/</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2730" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2730
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2730" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -166,7 +166,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2731" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2731
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2731" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2732
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2732" class="line" lang="diff"> printf("\nEnter number of amino acids in a typical database [%.0f]: ",</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2733
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2733" class="line" lang="diff"> SearchAA);</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2734
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2734" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2735" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2735
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2735" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2736" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2736
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2736" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2737" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2737
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2737" class="line" lang="diff"> if (strlen(ctemp)) SearchAA = atof(ctemp);</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2738" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2738
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2738" class="line" lang="diff"> printf ("Assuming %.0f sequences, %.0f amino acids in a search\n",</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2739
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2739" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/rank_matrix.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2740" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2740
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2740" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/rank_matrix.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2741" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2741
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2741" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -39,7 +39,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2742" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2742
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2742" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2743" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2743
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2743" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2744" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2744
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2744" class="line" lang="diff"> printf("\nEnter name of scoring matrix: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2745" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2745
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2745" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(matname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2746" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2746
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2746" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(matname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2747" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2747
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2747" class="line" lang="diff"> }</span>
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<td class="diff-line-num old old_line" data-linenumber="2748" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2748
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2748" class="line" lang="diff"> if ( (fmat=fopen(matname, "r")) == NULL)</span>
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<td class="diff-line-num old old_line" data-linenumber="2749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2749
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2749" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2750" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2750
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2750" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/readchk.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2751" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2751
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2751" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/readchk.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2752" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2752
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2752" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -20,7 +20,7 @@ char *argv[];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2753" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2753
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2753" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2754" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2754
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2754" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2755" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2755
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2755" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2756" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2756
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2756" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(chkname);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2757" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2757
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2757" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(chkname, 80, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2758" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2758
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2758" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2759" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2759
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2759" class="line" lang="diff"> if ( (chk=fopen(chkname, "r")) == NULL)</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2760" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2760
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2760" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2761" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2761
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2761" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/readmast.c</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2762" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2762
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2762" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/readmast.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2763" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2763
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2763" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -26,7 +26,7 @@ char *argv[];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2764" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2764
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2764" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2765" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2765
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2765" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2766" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2766
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2766" class="line" lang="diff"> printf("\nEnter name of configuration file: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2767" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2767
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2767" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(chkname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2768" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2768
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2768" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(chkname, 80, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2769" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2769
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2769" class="line" lang="diff"> }</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2770" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2770
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2770" class="line" lang="diff"> if ( (chk=fopen(chkname, "r")) == NULL)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2771" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2771
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2771" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2772" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2772
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2772" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/retblock.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2773" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2773
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2773" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/retblock.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2774" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2774
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2774" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -50,7 +50,7 @@ int main(argc, argv)</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2775" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2775
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2775" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2776" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2776
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2776" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2777" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2777
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2777" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2778" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2778
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2778" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2779" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2779
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2779" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2780" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2780
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2780" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2781" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2781
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2781" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2782" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2782
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2782" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2783" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2783
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2783" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -66,7 +66,7 @@ int main(argc, argv)</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2784" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2784
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2784" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2785" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2785
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2785" class="line" lang="diff"> strcpy(acname, "all");</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2786" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2786
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2786" class="line" lang="diff"> printf("\nEnter AC of blocks to extract, or all [%s]: ", acname);</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2787" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2787
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2787" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(acname);</span></span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2788" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2788
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2788" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(acname, MAXNAME, stdin);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2789" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2789
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2789" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2790" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2790
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2790" class="line" lang="diff"> if (strcasecmp(acname, "all") == 0) allflag = TRUE;</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2791" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2791
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2791" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2792" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2792
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2792" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/sequences.c</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2793" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2793
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2793" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/sequences.c</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2794" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2794
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2794" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -665,7 +665,7 @@ int read_sequence(seq, seq_type, start_p</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2795" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2795
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<pre style="margin: 0;">-<span id="LC2795" class="line" lang="diff"> stemp is a huge negative number ...</span>
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2796
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<pre style="margin: 0;">-<span id="LC2796" class="line" lang="diff"> */</span>
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2797
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<pre style="margin: 0;">-<span id="LC2797" class="line" lang="diff"> if (seq_type == AA_SEQ) {</span>
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2798
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<pre style="margin: 0;">-<span id="LC2798" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- while ( (c != NULL) && (c != '\0') && (num_seen < room_left) ) {</span></span>
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2799
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<pre style="margin: 0;">-<span id="LC2799" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ while ( (c != 0) && (c != '\0') && (num_seen < room_left) ) {</span></span>
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2800
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<pre style="margin: 0;">-<span id="LC2800" class="line" lang="diff"> stemp = aa_atob[c];</span>
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2801
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2801" class="line" lang="diff"> if (stemp < 0 || stemp > AAID_MAX) stemp = AAID_MAX + 1;</span>
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2802
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<pre style="margin: 0;">-<span id="LC2802" class="line" lang="diff"> if ( stemp <= AAID_MAX ) {</span>
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2803
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<pre style="margin: 0;">-<span id="LC2803" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1201,7 +1201,7 @@ printf("\n");</span></span>
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2804
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<pre style="margin: 0;">-<span id="LC2804" class="line" lang="diff"> }</span>
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2805
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2805" class="line" lang="diff"> } </span>
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2806
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2806" class="line" lang="diff"> else {</span>
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2807
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2807" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- printf("??) \t");</span></span>
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2808
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<pre style="margin: 0;">-<span id="LC2808" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ printf("??"") \t");</span></span>
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2809
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<pre style="margin: 0;">-<span id="LC2809" class="line" lang="diff"> printf("\n");</span>
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2810
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<pre style="margin: 0;">-<span id="LC2810" class="line" lang="diff"> for(k=0; k<seq->length; k++) {</span>
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<td class="diff-line-num old old_line" data-linenumber="2811" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2811
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<pre style="margin: 0;">-<span id="LC2811" class="line" lang="diff"> printf("%c", aa_btoa[seq->sequence[k]]);</span>
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<td class="diff-line-num old old_line" data-linenumber="2812" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2812
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<pre style="margin: 0;">-<span id="LC2812" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/sortblk.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2813" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2813
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2813" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/sortblk.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2814" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2814
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<pre style="margin: 0;">-<span id="LC2814" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -58,7 +58,7 @@ int main(argc, argv)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2815" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2815
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2815" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2816" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2816
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<pre style="margin: 0;">-<span id="LC2816" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2817" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2817
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<pre style="margin: 0;">-<span id="LC2817" class="line" lang="diff"> printf("\nEnter name of blocks database: ");</span>
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<td class="diff-line-num old old_line" data-linenumber="2818" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2818
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2818" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(bdbname);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2819
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2819" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(bdbname, MAXNAME, stdin);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2820" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2820
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2820" class="line" lang="diff"> }</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2821" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2821
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2821" class="line" lang="diff"> if ( (bfp=fopen(bdbname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2822" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2822
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2822" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2823" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2823
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2823" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -71,7 +71,7 @@ int main(argc, argv)</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2824" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2824
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2824" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2825" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2825
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2825" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2826" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2826
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2826" class="line" lang="diff"> printf("\nEnter name of new sorted blocks database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2827" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2827
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2827" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(conname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2828" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2828
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2828" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(conname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2829
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2829" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2830" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2830
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2830" class="line" lang="diff"> if ( (ofp=fopen(conname, "w")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2831" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2831
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2831" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2832" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2832
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2832" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/translate.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2833" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2833
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2833" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/translate.c</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2834" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2834
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2834" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -29,7 +29,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2835" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2835
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2835" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2836" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2836
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2836" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2837" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2837
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2837" class="line" lang="diff"> printf("\nEnter name of sequence database: ");</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2838" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2838
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2838" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(sname);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2839" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2839
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2839" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(sname, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2840" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2840
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2840" class="line" lang="diff"> }</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2841" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2841
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2841" class="line" lang="diff"> if ( (bfp=fopen(sname, "r")) == NULL)</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2842" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2842
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2842" class="line" lang="diff"> {</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2843" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2843
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2843" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -50,7 +50,7 @@ int main(argc, argv)</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2844" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2844
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2844" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2845" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2845
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2845" class="line" lang="diff"> {</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2846" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2846
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2846" class="line" lang="diff"> printf("\nEnter name of new translated sequence database: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2847" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2847
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2847" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(outname);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2848" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2848
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2848" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(outname, MAXNAME, stdin);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2849" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2849
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2849" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2850" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2850
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<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2850" class="line" lang="diff"> if ( (ofp=fopen(outname, "w")) == NULL)</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2851" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2851
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2851" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2852" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2852
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2852" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -62,7 +62,7 @@ int main(argc, argv)</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2853" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2853
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2853" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2854" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2854
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2854" class="line" lang="diff"> {</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2855" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2855
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2855" class="line" lang="diff"> printf("\nEnter translation frame: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2856" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2856
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2856" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2857" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2857
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2857" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2858" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2858
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2858" class="line" lang="diff"> frame = atoi(ctemp);</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2859" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2859
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2859" class="line" lang="diff"> }</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2860" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2860
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2860" class="line" lang="diff"> if (frame == 0 || frame < -3 || frame > 3) frame = 1;</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2861" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2861
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2861" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -74,7 +74,7 @@ int main(argc, argv)</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2862" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2862
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2862" class="line" lang="diff"> for (code = 0; code < NUMBER_OF_GENETIC_CODES; code++)</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2863" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2863
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2863" class="line" lang="diff"> printf("\n %d %s", code, gcodes[code].name);</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2864" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2864
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2864" class="line" lang="diff"> printf("\nEnter genetic code: ");</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2865" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2865
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2865" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- gets(ctemp);</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2866" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2866
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2866" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fgets(ctemp, MAXNAME, stdin);</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2867" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2867
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2867" class="line" lang="diff"> code = atoi(ctemp);</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2868" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2868
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2868" class="line" lang="diff"> }</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2869" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2869
</td>
<td class="diff-line-num new_line old" data-linenumber="1524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2869" class="line" lang="diff"> if (code < 0 || code > 8) code = 0;</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2870
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<pre style="margin: 0;">-<span id="LC2870" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/blimps/util.c</span></span>
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<pre style="margin: 0;">-<span id="LC2871" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/blimps/util.c</span></span>
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2872
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<pre style="margin: 0;">-<span id="LC2872" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,5 +1,6 @@</span></span>
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2873
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<pre style="margin: 0;">-<span id="LC2873" class="line" lang="diff"> #include <stdlib.h></span>
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2874
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<pre style="margin: 0;">-<span id="LC2874" class="line" lang="diff"> #include <stdio.h></span>
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2875
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<pre style="margin: 0;">-<span id="LC2875" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <string.h></span></span>
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2876
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<pre style="margin: 0;">-<span id="LC2876" class="line" lang="diff"> </span>
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2877
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<pre style="margin: 0;">-<span id="LC2877" class="line" lang="diff"> #define LF 10</span>
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2878
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<pre style="margin: 0;">-<span id="LC2878" class="line" lang="diff"> #define CR 13</span>
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2879
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<pre style="margin: 0;">-<span id="LC2879" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -92,7 +93,7 @@ int rind(char *s, char c) {</span></span>
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2880
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<pre style="margin: 0;">-<span id="LC2880" class="line" lang="diff"> return -1;</span>
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2881
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<pre style="margin: 0;">-<span id="LC2881" class="line" lang="diff"> }</span>
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2882
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<pre style="margin: 0;">-<span id="LC2882" class="line" lang="diff"> </span>
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2883
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<pre style="margin: 0;">-<span id="LC2883" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-int getline(char *s, int n, FILE *f) {</span></span>
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2884
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<pre style="margin: 0;">-<span id="LC2884" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+int blimps_getline(char *s, int n, FILE *f) {</span></span>
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2885
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<pre style="margin: 0;">-<span id="LC2885" class="line" lang="diff"> register int i=0;</span>
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2886
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<pre style="margin: 0;">-<span id="LC2886" class="line" lang="diff"> </span>
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2887
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<pre style="margin: 0;">-<span id="LC2887" class="line" lang="diff"> while(1) {</span>
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2888
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1524
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<pre style="margin: 0;"> <span id="LC1524" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/protomat/Makefile.Linux</span></span>
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2889
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1525
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<pre style="margin: 0;"> <span id="LC1525" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/protomat/Makefile.Linux</span></span>
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2890
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<td class="diff-line-num new_line" data-linenumber="1526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1526
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<pre style="margin: 0;"> <span id="LC1526" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -3,52 +3,65 @@</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2979" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1615" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2979,7 +1615,7 @@ Description: * replaced gets() with fgets()</td>
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2979
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1615
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<pre style="margin: 0;"> <span id="LC1615" class="line" lang="diff"> $(CC) $(CFLAGS) blksort.c</span>
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2980
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1616
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<pre style="margin: 0;"> <span id="LC1616" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- /dev/null</span></span>
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2981
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1617
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<pre style="margin: 0;"> <span id="LC1617" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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2982
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<pre style="margin: 0;">-<span id="LC2982" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -0,0 +1,1<span class="idiff left right">17</span> @@</span></span>
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1618
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<pre style="margin: 0;">+<span id="LC1618" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -0,0 +1,1<span class="idiff left right">06</span> @@</span></span>
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2983
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<td class="diff-line-num new_line" data-linenumber="1619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1619
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<pre style="margin: 0;"> <span id="LC1619" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+PACKAGE := blimps</span></span>
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2984
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<td class="diff-line-num new_line" data-linenumber="1620" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1620
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<pre style="margin: 0;"> <span id="LC1620" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+VERSION := 3.9</span></span>
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2985
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<td class="diff-line-num new_line" data-linenumber="1621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1621
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<pre style="margin: 0;"> <span id="LC1621" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+DISTDIR := $(PACKAGE)-$(VERSION)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2989" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1625" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2989,14 +1625,11 @@ Description: * replaced gets() with fgets()</td>
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2989
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1625
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<pre style="margin: 0;"> <span id="LC1625" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INCLUDEDIR := include</span></span>
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2990
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<td class="diff-line-num new_line" data-linenumber="1626" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1626
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<pre style="margin: 0;"> <span id="LC1626" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+PROTOMATDIR := protomat</span></span>
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2991
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<td class="diff-line-num new_line" data-linenumber="1627" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1627
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<pre style="margin: 0;"> <span id="LC1627" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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2992
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<td class="diff-line-num new_line old" data-linenumber="1628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2992" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+MAN1POD := fastaseqs.pod</span></span>
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2993
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<td class="diff-line-num new_line old" data-linenumber="1628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2993" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+MAN1GZ := $(MAN1POD:%.pod=%.1.gz)</span></span>
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2994
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<pre style="margin: 0;">-<span id="LC2994" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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2995
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<td class="diff-line-num new_line" data-linenumber="1628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1628
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<pre style="margin: 0;"> <span id="LC1628" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libdir ?= $(prefix)/lib</span></span>
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2996
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1629
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<pre style="margin: 0;"> <span id="LC1629" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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2997
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1630
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<pre style="margin: 0;"> <span id="LC1630" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# export LD_LIBRARY_PATH=/mnt/home/lkajan/project/rostlab/blimps/blimps-3.9/blimps</span></span>
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2998
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1631
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<pre style="margin: 0;"> <span id="LC1631" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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2999
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<td class="diff-line-num new_line old" data-linenumber="1632" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2999" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+all: blimps protomat<span class="idiff left right"> man</span></span></span>
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1632
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<pre style="margin: 0;">+<span id="LC1632" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+all: blimps protomat</span></span>
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3000
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<td class="diff-line-num new_line" data-linenumber="1633" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1633
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<pre style="margin: 0;"> <span id="LC1633" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3001
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<td class="diff-line-num new_line" data-linenumber="1634" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1634
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<pre style="margin: 0;"> <span id="LC1634" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+blimps:</span></span>
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3002
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1635
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<pre style="margin: 0;"> <span id="LC1635" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(MAKE) -C $(BLIMPSDIR) -f Makefile.Linux VERSION=$(VERSION)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3004" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1637" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3004,11 +1637,6 @@ Description: * replaced gets() with fgets()</td>
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3004
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1637
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<pre style="margin: 0;"> <span id="LC1637" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+protomat:</span></span>
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3005
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<td class="diff-line-num new_line" data-linenumber="1638" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1638
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<pre style="margin: 0;"> <span id="LC1638" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(MAKE) -C $(PROTOMATDIR) -f Makefile.Linux VERSION=$(VERSION)</span></span>
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3006
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1639
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<pre style="margin: 0;"> <span id="LC1639" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3007
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<td class="diff-line-num new_line old" data-linenumber="1640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3007" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+man: $(MAN1GZ)</span></span>
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3008
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<pre style="margin: 0;">-<span id="LC3008" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3009
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<td class="diff-line-num new_line old" data-linenumber="1640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3009" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+$(MAN1GZ) : %.1.gz : %.pod</span></span>
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3010
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<td class="diff-line-num new_line old" data-linenumber="1640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3010" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ pod2man -c 'User Commands' -r "$(VERSION)" $< | gzip -c > $@</span></span>
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3011
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<td class="diff-line-num new_line old" data-linenumber="1640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3011" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3012
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1640
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<pre style="margin: 0;"> <span id="LC1640" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# The sift package does not provide fastaseqs but expects it to exist. Fortunately this package provides it.</span></span>
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<td class="diff-line-num old_line" data-linenumber="3013" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3013
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<td class="diff-line-num new_line" data-linenumber="1641" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1641
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<pre style="margin: 0;"> <span id="LC1641" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+install: install-utils install-lib-dev install-lib install-data install-doc</span></span>
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3014
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<td class="diff-line-num new_line" data-linenumber="1642" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1642
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<pre style="margin: 0;"> <span id="LC1642" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1649" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3021,7 +1649,6 @@ Description: * replaced gets() with fgets()</td>
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3021
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<td class="diff-line-num new_line" data-linenumber="1649" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1649
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<pre style="margin: 0;"> <span id="LC1649" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mkdir -p $(DESTDIR)$(prefix)/bin && \</span></span>
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<td class="diff-line-num old_line" data-linenumber="3022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3022
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<td class="diff-line-num new_line" data-linenumber="1650" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1650
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<pre style="margin: 0;"> <span id="LC1650" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ cp -a $(BLIMPSDIR)/fastaseqs \</span></span>
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<td class="diff-line-num old_line" data-linenumber="3023" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3023
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<td class="diff-line-num new_line" data-linenumber="1651" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1651
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<pre style="margin: 0;"> <span id="LC1651" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(DESTDIR)$(prefix)/bin/</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3024" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3024
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<td class="diff-line-num new_line old" data-linenumber="1652" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3024" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mkdir -p $(DESTDIR)$(prefix)/share/man/man1 && cp $(MAN1GZ) $(DESTDIR)$(prefix)/share/man/man1/</span></span>
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<td class="diff-line-num old_line" data-linenumber="3025" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3025
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1652
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<pre style="margin: 0;"> <span id="LC1652" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="diff-line-num old_line" data-linenumber="3026" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3026
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<td class="diff-line-num new_line" data-linenumber="1653" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1653
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<pre style="margin: 0;"> <span id="LC1653" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+install-lib-dev:</span></span>
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3027
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1654
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<pre style="margin: 0;"> <span id="LC1654" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mkdir -p $(DESTDIR)$(prefix)/include/$(PACKAGE) && \</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3069" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1696" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3069,7 +1696,6 @@ Description: * replaced gets() with fgets()</td>
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3069
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1696
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<pre style="margin: 0;"> <span id="LC1696" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ChangeLog \</span></span>
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3070
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<td class="diff-line-num new_line" data-linenumber="1697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1697
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<pre style="margin: 0;"> <span id="LC1697" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Makefile \</span></span>
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<td class="diff-line-num old_line" data-linenumber="3071" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3071
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<td class="diff-line-num new_line" data-linenumber="1698" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1698
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<pre style="margin: 0;"> <span id="LC1698" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(PACKAGE).spec \</span></span>
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3072
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<td class="diff-line-num new_line old" data-linenumber="1699" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3072" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(MAN1POD) \</span></span>
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3073
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<td class="diff-line-num new_line" data-linenumber="1699" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1699
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<pre style="margin: 0;"> <span id="LC1699" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(DISTDIR)/;</span></span>
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<td class="diff-line-num old_line" data-linenumber="3074" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3074
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1700
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<pre style="margin: 0;"> <span id="LC1700" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3075
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<td class="diff-line-num new_line" data-linenumber="1701" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1701
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<pre style="margin: 0;"> <span id="LC1701" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+help:</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3085" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1711" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3085,7 +1711,6 @@ Description: * replaced gets() with fgets()</td>
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3085
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<td class="diff-line-num new_line" data-linenumber="1711" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1711
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1711" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo "distclean"</span></span>
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<td class="diff-line-num old_line" data-linenumber="3086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3086
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<td class="diff-line-num new_line" data-linenumber="1712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1712
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1712" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo "dist"</span></span>
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<td class="diff-line-num old_line" data-linenumber="3087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3087
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<td class="diff-line-num new_line" data-linenumber="1713" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1713
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<pre style="margin: 0;"> <span id="LC1713" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo "help"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3088" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3088
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<td class="diff-line-num new_line old" data-linenumber="1714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3088" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo "*man"</span></span>
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<td class="diff-line-num old_line" data-linenumber="3089" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3089
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<td class="diff-line-num new_line" data-linenumber="1714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1714
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<pre style="margin: 0;"> <span id="LC1714" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo "*protomat"</span></span>
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<td class="diff-line-num old_line" data-linenumber="3090" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3090
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<td class="diff-line-num new_line" data-linenumber="1715" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1715
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1715" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo</span></span>
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<td class="diff-line-num old_line" data-linenumber="3091" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3091
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<td class="diff-line-num new_line" data-linenumber="1716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1716
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<pre style="margin: 0;"> <span id="LC1716" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo "Variables:"</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3094,34 +1719,6 @@ Description: * replaced gets() with fgets()</td>
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3094
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<td class="diff-line-num new_line" data-linenumber="1719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1719
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<pre style="margin: 0;"> <span id="LC1719" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo "libdir - install libraries here, default: /$$(prefix)/lib"</span></span>
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<td class="diff-line-num old_line" data-linenumber="3095" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3095
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<td class="diff-line-num new_line" data-linenumber="1720" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1720
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<pre style="margin: 0;"> <span id="LC1720" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @echo " use prefix=$$HOME to build for personal use"</span></span>
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<td class="diff-line-num old_line" data-linenumber="3096" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3096
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<td class="diff-line-num new_line" data-linenumber="1721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1721
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<pre style="margin: 0;"> <span id="LC1721" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="3097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3097
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<td class="diff-line-num new_line old" data-linenumber="1722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3097" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.PHONY: all bin clean-blimps clean diff dist distclean distdir help install install-data install-lib install-lib-dev install-utils <span class="idiff left right">man </span>untar blimps protomat clean-protomat</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1722
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<pre style="margin: 0;">+<span id="LC1722" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.PHONY: all bin clean-blimps clean diff dist distclean distdir help install install-data install-lib install-lib-dev install-utils untar blimps protomat clean-protomat</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3098
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<td class="diff-line-num new_line" data-linenumber="1723" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1723
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<pre style="margin: 0;"> <span id="LC1723" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3099
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<td class="diff-line-num new_line" data-linenumber="1724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1724
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<pre style="margin: 0;"> <span id="LC1724" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# vim:ai:</span></span></pre>
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<td class="diff-line-num old old_line" data-linenumber="3100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3100
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3100" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- /dev/null</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3101
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3101" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/fastaseqs.pod</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3102
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3102" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -0,0 +1,25 @@</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3103
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3103" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+=head1 NAME</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3104
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3104" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3105
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3105" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+fastaseqs - converts a file of sequences to FASTA format</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="3106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3106
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3106" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3107
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<td class="diff-line-num new_line old" data-linenumber="1725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3107" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+=head1 SYNOPSIS</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3108
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<pre style="margin: 0;">-<span id="LC3108" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3109
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<pre style="margin: 0;">-<span id="LC3109" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+fastaseqs <INPUTFILE> <OUTPUTFILE></span></span>
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3110
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<pre style="margin: 0;">-<span id="LC3110" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3111
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<pre style="margin: 0;">-<span id="LC3111" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+=head1 DESCRIPTION</span></span>
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3112
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<pre style="margin: 0;">-<span id="LC3112" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3113
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<pre style="margin: 0;">-<span id="LC3113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+fastaseqs converts a file of sequences to FASTA format.</span></span>
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3114
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<pre style="margin: 0;">-<span id="LC3114" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3115
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<pre style="margin: 0;">-<span id="LC3115" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+=head1 AUTHOR</span></span>
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3116
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<pre style="margin: 0;">-<span id="LC3116" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3117
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<pre style="margin: 0;">-<span id="LC3117" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+J. Henikoff</span></span>
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3118
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<pre style="margin: 0;">-<span id="LC3118" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3119
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<pre style="margin: 0;">-<span id="LC3119" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+=head1 COPYRIGHT AND LICENSE</span></span>
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3120
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<pre style="margin: 0;">-<span id="LC3120" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3121
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<pre style="margin: 0;">-<span id="LC3121" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Copyright 1998, Fred Hutchinson Cancer Research Center</span></span>
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3122
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<pre style="margin: 0;">-<span id="LC3122" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3123
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<pre style="margin: 0;">-<span id="LC3123" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Please refer to /usr/share/doc/*blimps*/copyright for the license.</span></span>
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3124
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<pre style="margin: 0;">-<span id="LC3124" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3125
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<pre style="margin: 0;">-<span id="LC3125" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+=head1 SEE ALSO</span></span>
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3126
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<pre style="margin: 0;">-<span id="LC3126" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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3127
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<pre style="margin: 0;">-<span id="LC3127" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+L<http://blocks.fhcrc.org/blocks/uploads/blimps/></span></span></pre>
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<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">patch001</span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">gets.patch</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">makefile.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">hardening.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/blimps/compare/7839e5d98a0f842bb15c953189b6958a2c7b1ee8...c2b943620baa785ce8b67efaca68f3aff0ab5457#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,10 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"># In order to make dh verbose set this to 1:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"># export DH_VERBOSE=1</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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6
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">%:</span>
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7
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dh $@</span>
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8
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,8 +14,11 @@ override_dh_auto_install:</td>
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10
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> dh_auto_install -- prefix=/usr</span>
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11
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> find debian/tmp -name LICENSE -delete</span>
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12
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">override_dh_dwz:</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> echo "Optimization of DWARF debug information in ELF binaries via dwz does not work"</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"><span class="idiff left right">#</span>override_dh_dwz:</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"><span class="idiff left right">#</span> echo "Optimization of DWARF debug information in ELF binaries via dwz does not work"</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">override_dh_clean:</span>
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17
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dh_clean blimps/deps.mk</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">manpage:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> pod2man -c 'User Commands' -r "$(DEB_VERSION_UPSTREAM)" debian/fastaseqs.pod > debian/fastaseqs.1</span></pre>
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