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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/hmmer2">Debian Med / hmmer2</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/hmmer2/commit/60ca6f1a26e348b0d52949c46367ea159f54f080">60ca6f1a</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-01-11T15:50:04Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix typo
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<h4>2 changed files:</h4>
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debian/patches/fix_typo.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="949fa9a238d5c92bb57ffe947023f29d70070e9d">
<a href="https://salsa.debian.org/med-team/hmmer2/commit/60ca6f1a26e348b0d52949c46367ea159f54f080#949fa9a238d5c92bb57ffe947023f29d70070e9d"><strong>debian/patches/fix_typo.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: Fri, 11 Jan 2019 15:43:07 +0100</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Description: Typo in referencing biosquid function</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/histogram.c</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/histogram.c</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -470,7 +470,7 @@ EVDBasicFit(struct histogram_s *h) {</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> d[sc - h->lowscore] = log(-1. * log(d[sc - h->lowscore]));</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> // do the linear regression</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- FLinefit(x, d, hsize-1, &intercept, &slope, &corr);</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ Linefit(x, d, hsize-1, &intercept, &slope, &corr);</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> // calc mu, lambda</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> lambda = -1. * slope;</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> mu = intercept / lambda;</span></pre>
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<a href="https://salsa.debian.org/med-team/hmmer2/commit/60ca6f1a26e348b0d52949c46367ea159f54f080#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_debian_packaged_biosquid.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">build_libhmmer.a_with-fPIC.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">fix_typo.patch</span></pre>
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