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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/vsearch">Debian Med / vsearch</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/vsearch/commit/a2403d5aba6ecbe496bac99fe161c62ec44224bb">a2403d5a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:54:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.10.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vsearch/commit/baba9c99222bfe91bb5bc3cc2fc5df7322bf2b74">baba9c99</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:54:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.10.4'
Update to upstream version '2.10.4'
with Debian dir 3bd1892beea2fd7bf28f0378691eb9f94e3a6efd</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vsearch/commit/f2859ca7d3829fa1af180f6c9a6ea0f1dbb27125">f2859ca7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:54:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vsearch/commit/9975266b75df7fed76dd4071bc0494c3aa01910e">9975266b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:54:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vsearch/commit/ea6ece503748eedfe061a55a5ae04c58a71a62c1">ea6ece50</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:54:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.3.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vsearch/commit/e46ae41869ca435c1de75c35bc7be7885be8fd0d">e46ae418</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:54:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vsearch/commit/03a0889a8328c78e2a9c45ec67db539e3bee1268">03a0889a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T21:55:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>17 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#79b82ce9b64a924266619555502f890dd80c83b9">
LICENSE.txt
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#b7ca4efea9812be2ea989e558de10e419bd9cf39">
man/vsearch.1
</a>
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<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
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<li class="file-stats">
<a href="#7bd744d1aedb1ee59d808225be45752dcae8e259">
src/align_simd.cc
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<li class="file-stats">
<a href="#0fd044a04525b2a4ea0a87be7b2912b8f1ba6256">
src/cpu.cc
</a>
</li>
<li class="file-stats">
<a href="#595c098032bba671a3a3083cb47f44475ed94a83">
src/cpu.h
</a>
</li>
<li class="file-stats">
<a href="#6f963d02896322eab19500836bca3f9a22619a35">
src/fastqops.cc
</a>
</li>
<li class="file-stats">
<a href="#17ad714a10ccf09e56488834d28f0f3bf318d429">
src/results.cc
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</li>
<li class="file-stats">
<a href="#35fe4ade1b8de990f60c06f5d33f909fef22ba51">
src/searchcore.cc
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</li>
<li class="file-stats">
<a href="#b0109d980457466d1deec0f79c45e2b54114fdd5">
src/vsearch.cc
</a>
</li>
<li class="file-stats">
<a href="#d5c50f833cab4828d6d2b3f54dda35a42237db09">
src/vsearch.h
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="79b82ce9b64a924266619555502f890dd80c83b9">
<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#79b82ce9b64a924266619555502f890dd80c83b9"><strong>LICENSE.txt</strong></a>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"> VSEARCH: a versatile open source tool for metagenomics</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> Copyright (C) 2014-201<span class="idiff left right">7</span>, Torbjorn Rognes, Frederic Mahe and Tomas Flouri</span>
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<td class="diff-line-num new old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Copyright (C) 2014-201<span class="idiff left right">9</span>, Torbjorn Rognes, Frederic Mahe and Tomas Flouri</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> All rights reserved.</span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> Contact: Torbjorn Rognes <torognes@ifi.uio.no>,</span>
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<br>
</li>
<li id="8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d"><strong>README.md</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +16,7 @@ We have implemented a tool called VSEARCH which supports *de novo* and reference</td>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="markdown">VSEARCH stands for vectorized search, as the tool takes advantage of parallelism in the form of SIMD vectorization as well as multiple threads to perform accurate alignments at high speed. VSEARCH uses an optimal global aligner (full dynamic programming Needleman-Wunsch), in contrast to USEARCH which by default uses a heuristic seed and extend aligner. This usually results in more accurate alignments and overall improved sensitivity (recall) with VSEARCH, especially for alignments with gaps.</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="markdown">VSEARCH binaries are provided for x86-64 systems running GNU/Linux, macOS (version 10.7 or higher) and Windows (64-bit, version 7 or higher), as well as <span class="idiff left right">ppc64le systems running GNU/Linux</span>.</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="markdown">VSEARCH binaries are provided for x86-64 systems running GNU/Linux, macOS (version 10.7 or higher) and Windows (64-bit, version 7 or higher), as well as <span class="idiff left right">for 64-bit little-endian POWER8 (ppc64le) and 64-bit ARMv8 systems (aarch64) running GNU/Linux. VSEARCH contains dedicated SIMD code for these three processors architectures (SSE2, AltiVec/VMX/VSX, Neon)</span>.</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="markdown">VSEARCH can directly read input query and database files that are compressed using gzip and bzip2 (.gz and .bz2) if the zlib and bzip2 libraries are available.</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="markdown"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,7 +24,7 @@ Most of the nucleotide based commands and options in USEARCH version 7 are suppo</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Getting Help</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="markdown">If you can't find an answer in the <span class="p">[</span><span class="nv" style="color: teal;">VSEARCH documentation</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">2</span>/vsearch_manual.pdf</span><span class="p">)</span>, please visit the <span class="p">[</span><span class="nv" style="color: teal;">VSEARCH Web Forum</span><span class="p">](</span><span class="sx" style="color: #d14;">https://groups.google.com/forum/#!forum/vsearch-forum</span><span class="p">)</span> to post a question or start a discussion.</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="markdown">If you can't find an answer in the <span class="p">[</span><span class="nv" style="color: teal;">VSEARCH documentation</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">4</span>/vsearch_manual.pdf</span><span class="p">)</span>, please visit the <span class="p">[</span><span class="nv" style="color: teal;">VSEARCH Web Forum</span><span class="p">](</span><span class="sx" style="color: #d14;">https://groups.google.com/forum/#!forum/vsearch-forum</span><span class="p">)</span> to post a question or start a discussion.</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Example</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,9 +37,9 @@ In the example below, VSEARCH will identify sequences in the file database.fsa t</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Source distribution**</span> To download the source distribution from a <span class="p">[</span><span class="nv" style="color: teal;">release</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases</span><span class="p">)</span> and build the executable and the documentation, use the following commands:</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="markdown"></span>
</pre>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="markdown"><span class="p">```</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="markdown"><span class="sb" style="color: #d14;">wget https://github.com/torognes/vsearch/archive/v2.10.<span class="idiff left right">2</span>.tar.gz</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="markdown"><span class="sb" style="color: #d14;">tar xzf v2.10.<span class="idiff left right">2</span>.tar.gz</span></span>
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<td class="diff-line-num old old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="markdown"><span class="sb" style="color: #d14;">cd vsearch-2.10.<span class="idiff left right">2</span></span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="markdown"><span class="sb" style="color: #d14;">wget https://github.com/torognes/vsearch/archive/v2.10.<span class="idiff left right">4</span>.tar.gz</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="markdown"><span class="sb" style="color: #d14;">tar xzf v2.10.<span class="idiff left right">4</span>.tar.gz</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="markdown"><span class="sb" style="color: #d14;">cd vsearch-2.10.<span class="idiff left right">4</span></span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="markdown"><span class="sb" style="color: #d14;">./autogen.sh</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="markdown"><span class="sb" style="color: #d14;">./configure</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="markdown"><span class="sb" style="color: #d14;">make</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,8 +48,6 @@ make install # as root or sudo make install</td>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="markdown"></span>
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49
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="markdown">You may customize the installation directory using the <span class="sb" style="color: #d14;">`--prefix=DIR`</span> option to <span class="sb" style="color: #d14;">`configure`</span>. If the compression libraries <span class="p">[</span><span class="nv" style="color: teal;">zlib</span><span class="p">](</span><span class="sx" style="color: #d14;">http://www.zlib.net</span><span class="p">)</span> and/or <span class="p">[</span><span class="nv" style="color: teal;">bzip2</span><span class="p">](</span><span class="sx" style="color: #d14;">http://www.bzip.org</span><span class="p">)</span> are installed on the system, they will be detected automatically and support for compressed files will be included in vsearch. Support for compressed files may be disabled using the <span class="sb" style="color: #d14;">`--disable-zlib`</span> and <span class="sb" style="color: #d14;">`--disable-bzip2`</span> options to <span class="sb" style="color: #d14;">`configure`</span>. A PDF version of the manual will be created from the <span class="sb" style="color: #d14;">`vsearch.1`</span> manual file if <span class="sb" style="color: #d14;">`ps2pdf`</span> is available, unless disabled using the <span class="sb" style="color: #d14;">`--disable-pdfman`</span> option to <span class="sb" style="color: #d14;">`configure`</span>. Other options may also be applied to <span class="sb" style="color: #d14;">`configure`</span>, please run <span class="sb" style="color: #d14;">`configure -h`</span> to see them all. GNU autotools (version 2.63 or later) and the gcc compiler is required to build vsearch.</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="markdown">The IBM XL C++ compiler is recommended on ppc64le systems.</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="markdown">The Windows binary was compiled using the <span class="p">[</span><span class="nv" style="color: teal;">Mingw-w64</span><span class="p">](</span><span class="sx" style="color: #d14;">https://mingw-w64.org/</span><span class="p">)</span> C++ cross-compiler.</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Cloning the repo**</span> Instead of downloading the source distribution as a compressed archive, you could clone the repo and build it as shown below. The options to <span class="sb" style="color: #d14;">`configure`</span> as described above are still valid.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,47 +63,56 @@ make install # as root or sudo make install</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Binary distribution**</span> Starting with version 1.4.0, binary distribution files containing pre-compiled binaries as well as the documentation will be made available as part of each <span class="p">[</span><span class="nv" style="color: teal;">release</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases</span><span class="p">)</span>. The included executables include support for input files compressed by zlib and bzip2 (with files usually ending in <span class="sb" style="color: #d14;">`.gz`</span> or <span class="sb" style="color: #d14;">`.bz2`</span>).</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="markdown">Binary distributions are provided for x86-64 systems running GNU/Linux, macOS (version 10.7 or higher) and Windows (64-bit, version 7 or higher), as well as <span class="idiff left right">ppc64le</span> systems running GNU/Linux.</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="markdown">Binary distributions are provided for x86-64 systems running GNU/Linux, macOS (version 10.7 or higher) and Windows (64-bit, version 7 or higher), as well as <span class="idiff left right">POWER8 (ppc64le) and 64-bit AMDv8 (aarch64)</span> systems running GNU/Linux.</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="markdown">Download the appropriate executable for your system using the following commands if you are using a Linux x86_64 system:</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="markdown"><span class="p">```</span><span class="nl">sh</span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="markdown">wget https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">2/vsearch-2.10.2</span>-linux-x86_64.tar.gz</span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="markdown"><span class="nb" style="color: #0086b3;">tar </span>xzf vsearch-2.10.<span class="idiff left right">2</span>-linux-x86_64.tar.gz</span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="markdown">wget https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">4/vsearch-2.10.4</span>-linux-x86_64.tar.gz</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="markdown"><span class="nb" style="color: #0086b3;">tar </span>xzf vsearch-2.10.<span class="idiff left right">4</span>-linux-x86_64.tar.gz</span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="markdown"><span class="p">```</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="markdown">Or these commands if you are using a Linux ppc64le system:</span>
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="markdown"></span>
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79
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="markdown"><span class="p">```</span><span class="nl">sh</span></span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="markdown">wget https://github.com/torognes/vsearch/releases/download/v2.10.2/vsearch-2.10.2-linux-ppc64le.tar.gz</span>
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81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="markdown"><span class="nb" style="color: #0086b3;">tar </span>xzf vsearch-2.10.2-linux-ppc64le.tar.gz</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="markdown">wget https://github.com/torognes/vsearch/releases/download/v2.10.4/vsearch-2.10.4-linux-ppc64le.tar.gz</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="markdown"><span class="nb" style="color: #0086b3;">tar </span>xzf vsearch-2.10.4-linux-ppc64le.tar.gz</span>
</pre>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="markdown"><span class="p">```</span></span>
</pre>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="markdown"></span>
</pre>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="markdown">Or these commands if you are using a Linux aarch64 system:</span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="markdown"></span>
</pre>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="markdown"><span class="p">```</span><span class="nl">sh</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="markdown">wget https://github.com/torognes/vsearch/releases/download/v2.10.4/vsearch-2.10.4-linux-aarch64.tar.gz</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="markdown"><span class="nb" style="color: #0086b3;">tar </span>xzf vsearch-2.10.4-linux-aarch64.tar.gz</span>
</pre>
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82
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="markdown"><span class="p">```</span></span>
</pre>
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83
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88
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC88" class="line" lang="markdown"></span>
</pre>
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84
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="markdown">Or these commands if you are using a Mac:</span>
</pre>
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85
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90
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC90" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
86
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<td class="diff-line-num new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC91" class="line" lang="markdown"><span class="p">```</span><span class="nl">sh</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="markdown">wget https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">2/vsearch-2.10.2</span>-macos-x86_64.tar.gz</span>
</pre>
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88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="markdown"><span class="nb" style="color: #0086b3;">tar </span>xzf vsearch-2.10.<span class="idiff left right">2</span>-macos-x86_64.tar.gz</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="markdown">wget https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">4/vsearch-2.10.4</span>-macos-x86_64.tar.gz</span>
</pre>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="markdown"><span class="nb" style="color: #0086b3;">tar </span>xzf vsearch-2.10.<span class="idiff left right">4</span>-macos-x86_64.tar.gz</span>
</pre>
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89
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94
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC94" class="line" lang="markdown"><span class="p">```</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
90
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<td class="diff-line-num new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
95
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC95" class="line" lang="markdown"></span>
</pre>
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96
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="markdown">Or if you are using Windows, download and extract (unzip) the contents of this file:</span>
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92
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="markdown"></span>
</pre>
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93
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="markdown"><span class="p">```</span></span>
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94
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="markdown"><span class="sb" style="color: #d14;">https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">2/vsearch-2.10.2</span>-win-x86_64.zip</span></span>
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="markdown"><span class="sb" style="color: #d14;">https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left right">4/vsearch-2.10.4</span>-win-x86_64.zip</span></span>
</pre>
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95
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="markdown"><span class="p">```</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
96
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<td class="diff-line-num new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
97
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="markdown">Linux and Mac: You will now have the binary distribution in a folder called <span class="sb" style="color: #d14;">`vsearch-2.10.<span class="idiff left">2-linux-x86_64`</span></span><span class="idiff"> or </span><span class="sb" style="color: #d14;"><span class="idiff right">`vsearch-2.10.2</span>-macos-x86_64`</span> in which you will find three subfolders <span class="sb" style="color: #d14;">`bin`</span>, <span class="sb" style="color: #d14;">`man`</span> and <span class="sb" style="color: #d14;">`doc`</span>. We recommend making a copy or a symbolic link to the vsearch binary <span class="sb" style="color: #d14;">`bin/vsearch`</span> in a folder included in your <span class="sb" style="color: #d14;">`$PATH`</span>, and a copy or a symbolic link to the vsearch man page <span class="sb" style="color: #d14;">`man/vsearch.1`</span> in a folder included in your <span class="sb" style="color: #d14;">`$MANPATH`</span>. The PDF version of the manual is available in <span class="sb" style="color: #d14;">`doc/vsearch_manual.pdf`</span>.</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="markdown">Linux and Mac: You will now have the binary distribution in a folder called <span class="sb" style="color: #d14;">`vsearch-2.10.<span class="idiff left">4-linux-x86_64`</span></span><span class="idiff"> or </span><span class="sb" style="color: #d14;"><span class="idiff right">`vsearch-2.10.4</span>-macos-x86_64`</span> in which you will find three subfolders <span class="sb" style="color: #d14;">`bin`</span>, <span class="sb" style="color: #d14;">`man`</span> and <span class="sb" style="color: #d14;">`doc`</span>. We recommend making a copy or a symbolic link to the vsearch binary <span class="sb" style="color: #d14;">`bin/vsearch`</span> in a folder included in your <span class="sb" style="color: #d14;">`$PATH`</span>, and a copy or a symbolic link to the vsearch man page <span class="sb" style="color: #d14;">`man/vsearch.1`</span> in a folder included in your <span class="sb" style="color: #d14;">`$MANPATH`</span>. The PDF version of the manual is available in <span class="sb" style="color: #d14;">`doc/vsearch_manual.pdf`</span>.</span>
</pre>
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98
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="markdown">Windows: You will now have the binary distribution in a folder called <span class="sb" style="color: #d14;">`vsearch-2.10.<span class="idiff left right">2</span>-win-x86_64`</span>. The vsearch executable is called <span class="sb" style="color: #d14;">`vsearch.exe`</span>. The manual in PDF format is called <span class="sb" style="color: #d14;">`vsearch_manual.pdf`</span>.</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="markdown">Windows: You will now have the binary distribution in a folder called <span class="sb" style="color: #d14;">`vsearch-2.10.<span class="idiff left right">4</span>-win-x86_64`</span>. The vsearch executable is called <span class="sb" style="color: #d14;">`vsearch.exe`</span>. The manual in PDF format is called <span class="sb" style="color: #d14;">`vsearch_manual.pdf`</span>.</span>
</pre>
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100
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="markdown"></span>
</pre>
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101
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
102
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<td class="diff-line-num new_line old" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Documentation**</span> The VSEARCH user's manual is available in the <span class="sb" style="color: #d14;">`man`</span> folder in the form of a <span class="p">[</span><span class="nv" style="color: teal;">man page</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/blob/master/man/vsearch.1</span><span class="p">)</span>. A pdf version (<span class="p">[</span><span class="nv" style="color: teal;">vsearch_manual.pdf</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left">2/vsearch_manual.pdf</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff">) will be generated by </span><span class="sb" style="color: #d14;"><span class="idiff">`make`</span></span><span class="idiff">. To install the manpage manually, copy the </span><span class="sb" style="color: #d14;"><span class="idiff">`vsearch.1`</span></span><span class="idiff"> file or a create a symbolic link to </span><span class="sb" style="color: #d14;"><span class="idiff">`vsearch.1`</span></span><span class="idiff"> in a folder included in your </span><span class="sb" style="color: #d14;"><span class="idiff">`$MANPATH`</span></span><span class="idiff">. The manual in both formats is also available with the binary distribution. The manual in PDF form (</span><span class="p"><span class="idiff">[</span></span><span class="nv" style="color: teal;"><span class="idiff">vsearch_manual.pdf</span></span><span class="p"><span class="idiff">](</span></span><span class="sx" style="color: #d14;"><span class="idiff right">https://github.com/torognes/vsearch/releases/download/v2.10.2</span>/vsearch_manual.pdf</span><span class="p">)</span>) is also attached to the latest <span class="p">[</span><span class="nv" style="color: teal;">release</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases</span><span class="p">)</span>.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Documentation**</span> The VSEARCH user's manual is available in the <span class="sb" style="color: #d14;">`man`</span> folder in the form of a <span class="p">[</span><span class="nv" style="color: teal;">man page</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/blob/master/man/vsearch.1</span><span class="p">)</span>. A pdf version (<span class="p">[</span><span class="nv" style="color: teal;">vsearch_manual.pdf</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases/download/v2.10.<span class="idiff left">4/vsearch_manual.pdf</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff">) will be generated by </span><span class="sb" style="color: #d14;"><span class="idiff">`make`</span></span><span class="idiff">. To install the manpage manually, copy the </span><span class="sb" style="color: #d14;"><span class="idiff">`vsearch.1`</span></span><span class="idiff"> file or a create a symbolic link to </span><span class="sb" style="color: #d14;"><span class="idiff">`vsearch.1`</span></span><span class="idiff"> in a folder included in your </span><span class="sb" style="color: #d14;"><span class="idiff">`$MANPATH`</span></span><span class="idiff">. The manual in both formats is also available with the binary distribution. The manual in PDF form (</span><span class="p"><span class="idiff">[</span></span><span class="nv" style="color: teal;"><span class="idiff">vsearch_manual.pdf</span></span><span class="p"><span class="idiff">](</span></span><span class="sx" style="color: #d14;"><span class="idiff right">https://github.com/torognes/vsearch/releases/download/v2.10.4</span>/vsearch_manual.pdf</span><span class="p">)</span>) is also attached to the latest <span class="p">[</span><span class="nv" style="color: teal;">release</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/torognes/vsearch/releases</span><span class="p">)</span>.</span>
</pre>
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103
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<td class="diff-line-num new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<td class="diff-line-num new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
105
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<td class="diff-line-num new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Plugins, packages, and wrappers</span></span>
</pre>
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106
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
107
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<td class="diff-line-num new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**QIIME 2 plugin**</span> Thanks to the <span class="p">[</span><span class="nv" style="color: teal;">QIIME 2</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/qiime2</span><span class="p">)</span> team, there is now a plugin called <span class="p">[</span><span class="nv" style="color: teal;">q2-vsearch</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/qiime2/q2-vsearch</span><span class="p">)</span> for <span class="p">[</span><span class="nv" style="color: teal;">QIIME 2</span><span class="p">](</span><span class="sx" style="color: #d14;">https://qiime2.org</span><span class="p">)</span>.</span>
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<td class="diff-line-num old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<td class="diff-line-num new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Conda package**</span> Thanks to the <span class="p">[</span><span class="nv" style="color: teal;">BioConda</span><span class="p">](</span><span class="sx" style="color: #d14;">https://bioconda.github.io/</span><span class="p">)</span> team, there is now a <span class="p">[</span><span class="nv" style="color: teal;">vsearch package</span><span class="p">](</span><span class="sx" style="color: #d14;">https://anaconda.org/bioconda/vsearch</span><span class="p">)</span> in <span class="p">[</span><span class="nv" style="color: teal;">Conda</span><span class="p">](</span><span class="sx" style="color: #d14;">https://conda.io/</span><span class="p">)</span>.</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="diff-line-num new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Homebrew package**</span> Thanks to <span class="p">[</span><span class="nv" style="color: teal;">Torsten Seeman</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/tseemann</span><span class="p">)</span>, a <span class="p">[</span><span class="nv" style="color: teal;">vsearch package</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/Homebrew/homebrew-science/pull/2409</span><span class="p">)</span> for <span class="p">[</span><span class="nv" style="color: teal;">Homebrew</span><span class="p">](</span><span class="sx" style="color: #d14;">http://brew.sh/</span><span class="p">)</span> has been made.</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<td class="diff-line-num new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="markdown"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<td class="diff-line-num new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
118
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**Debian package**</span> Thanks to the <span class="p">[</span><span class="nv" style="color: teal;">Debian Med</span><span class="p">](</span><span class="sx" style="color: #d14;">https://www.debian.org/devel/debian-med/</span><span class="p">)</span> team, there is now a <span class="p">[</span><span class="nv" style="color: teal;">vsearch</span><span class="p">](</span><span class="sx" style="color: #d14;">https://packages.debian.org/sid/vsearch</span><span class="p">)</span> package in <span class="p">[</span><span class="nv" style="color: teal;">Debian</span><span class="p">](</span><span class="sx" style="color: #d14;">https://www.debian.org/</span><span class="p">)</span>.</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -187,6 +194,7 @@ File | Description</td>
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<td class="diff-line-num old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
187
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<td class="diff-line-num new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**eestats.cc**</span> | Produce statistics for fastq_eestats command</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
188
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<td class="diff-line-num new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**fasta.cc**</span> | FASTA file parser</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**fastq.cc**</span> | FASTQ file parser</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**fastqjoin.cc**</span> | FASTQ paired-end reads joining</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
190
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<td class="diff-line-num new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**fastqops.cc**</span> | FASTQ file statistics etc</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
191
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<td class="diff-line-num new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**fastx.cc**</span> | Detection of FASTA and FASTQ files, wrapper for FASTA and FASTQ parsers</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**kmerhash.cc**</span> | Hash for kmers used by paired-end read merger</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -203,6 +211,7 @@ File | Description</td>
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<td class="diff-line-num old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
203
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<td class="diff-line-num new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**search.cc**</span> | Implements search using global alignment</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
204
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<td class="diff-line-num new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**searchcore.cc**</span> | Core search functions for searching, clustering and chimera detection</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
205
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<td class="diff-line-num new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**searchexact.cc**</span> | Exact search functions</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**sffconvert.cc**</span> | SFF to FASTQ file conversion</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**sha1.c**</span> | SHA1 message digest</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**showalign.cc**</span> | Output an alignment in a human-readable way given a CIGAR-string and the sequences</span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="markdown"><span class="gs" style="font-weight: 600;">**shuffle.cc**</span> | Shuffle sequences</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -232,14 +241,6 @@ or you could send an email to [torognes@ifi.uio.no](mailto:torognes@ifi.uio.no?s</td>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="markdown">VSEARCH is designed for rather short sequences, and will be slow when sequences are longer than about 5,000 bp. This is because it always performs optimal global alignment on selected sequences.</span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Future work</span></span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="markdown">Some issues to work on:</span>
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="markdown"><span class="p">*</span> testing and debugging</span>
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240
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="markdown"><span class="p">*</span> heuristics for alignment of long sequences (e.g. banded alignment around selected diagonals)?</span>
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## The VSEARCH team</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="markdown">The main contributors to VSEARCH:</span>
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<li id="87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># Process this file with autoconf to produce a configure script.</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">AC_PREREQ([2.63])</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">AC_INIT([vsearch], [2.10.<span class="idiff left right">2</span>], [torognes@ifi.uio.no])</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">AC_INIT([vsearch], [2.10.<span class="idiff left right">4</span>], [torognes@ifi.uio.no])</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">AC_CANONICAL_TARGET</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">AM_INIT_AUTOMAKE([subdir-objects])</span>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">AC_LANG([C++])</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,6 +86,7 @@ if test "x${have_zlib}" = "xyes"; then</td>
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86
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext">fi</span>
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext">case $target in</span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> aarch64*) target_aarch64="yes" ;;</span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> powerpc64*) target_ppc="yes" ;;</span>
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext">esac</span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,6 +97,7 @@ AM_CONDITIONAL(HAVE_ZLIB, test "x${have_zlib}" = "xyes")</td>
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96
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext">AM_CONDITIONAL(HAVE_PTHREADS, test "x${have_pthreads}" = "xyes")</span>
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97
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext">AM_CONDITIONAL(HAVE_PS2PDF, test "x${have_ps2pdf}" = "xyes")</span>
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98
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext">AM_CONDITIONAL(TARGET_PPC, test "x${target_ppc}" = "xyes")</span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext">AM_CONDITIONAL(TARGET_AARCH64, test "x${target_aarch64}" = "xyes")</span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext">AM_PROG_CC_C_O</span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext">AC_CONFIG_FILES([Makefile</span>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">vsearch (2.10.4-1) unstable; urgency=medium</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debhelper 12</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.3.0</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Secure URI in copyright format</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 11 Jan 2019 22:54:35 +0100</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">vsearch (2.10.2-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * New upstream version</span>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">2</span></span></pre>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,13 +4,13 @@ Uploaders: Tim Booth <tbooth@ceh.ac.uk>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1</span>~),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">2</span>~),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> zlib1g-dev,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libbz2-dev,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python-markdown,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> ghostscript,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> time</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3.0</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/vsearch</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/vsearch.git</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Homepage: https://github.com/torognes/vsearch/</span>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: VSEARCH</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Contact: Torbjørn Rognes <torognes@ifi.uio.no></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: https://github.com/torognes/vsearch/</span>
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<li id="b7ca4efea9812be2ea989e558de10e419bd9cf39">
<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#b7ca4efea9812be2ea989e558de10e419bd9cf39"><strong>man/vsearch.1</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">.\" ============================================================================</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">.TH vsearch 1 "<span class="idiff left right">December 10, 2018" "version 2.10.2</span>" "USER COMMANDS"</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">.TH vsearch 1 "<span class="idiff left right">January 4, 2019" "version 2.10.4</span>" "USER COMMANDS"</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">.\" ============================================================================</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">vsearch \(em chimera detection, clustering, dereplication and</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1430,7 +1430,7 @@ file containing containing the reverse reads.</td>
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<pre style="margin: 0;"> <span id="LC1430" class="line" lang="plaintext">.BI \-\-sff_convert \0filename</span>
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<td class="diff-line-num old_line" data-linenumber="1431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1431" class="line" lang="plaintext">Convert the given SFF file to FASTQ. The FASTQ output file is</span>
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<td class="diff-line-num old_line" data-linenumber="1432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1432" class="line" lang="plaintext">specified with the \-\-fastqout option. The sequence may be clipped as</span>
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<pre style="margin: 0;">-<span id="LC1433" class="line" lang="plaintext">specied in the SFF file if the option \-\-sff_clip is specified,</span>
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<pre style="margin: 0;">+<span id="LC1433" class="line" lang="plaintext">speci<span class="idiff left right">fi</span>ed in the SFF file if the option \-\-sff_clip is specified,</span>
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<pre style="margin: 0;"> <span id="LC1434" class="line" lang="plaintext">otherwise no clipping occurs. Bases that would have been clipped are</span>
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<td class="diff-line-num old_line" data-linenumber="1435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC1435" class="line" lang="plaintext">converted to lower case, while the rest is in upper case. The output</span>
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<pre style="margin: 0;"> <span id="LC1436" class="line" lang="plaintext">quality encoding may be specified with the \-\-fastq_asciiout option</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3496,6 +3496,16 @@ speed and memory usage improvements.</td>
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3496
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3496
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<pre style="margin: 0;"> <span id="LC3496" class="line" lang="plaintext">.TP</span>
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3497
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<pre style="margin: 0;"> <span id="LC3497" class="line" lang="plaintext">.BR v2.10.2\~ "released December 10th, 2018"</span>
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3498
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3498
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<pre style="margin: 0;"> <span id="LC3498" class="line" lang="plaintext">Fixed bug in sintax with reversed order of domain and kingdom.</span>
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3499
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<pre style="margin: 0;">+<span id="LC3499" class="line" lang="plaintext">.TP</span>
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<pre style="margin: 0;">+<span id="LC3500" class="line" lang="plaintext">.BR v2.10.3\~ "released December 19th, 2018"</span>
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3501
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<pre style="margin: 0;">+<span id="LC3501" class="line" lang="plaintext">Ported to Linux on ARMv8 (aarch64). Fixed compilation warning with gcc</span>
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3502
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<pre style="margin: 0;">+<span id="LC3502" class="line" lang="plaintext">version 8.1.0 and 8.2.0.</span>
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3503
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<pre style="margin: 0;">+<span id="LC3503" class="line" lang="plaintext">.TP</span>
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3504
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<pre style="margin: 0;">+<span id="LC3504" class="line" lang="plaintext">.BR v2.10.4\~ "released January 4th, 2019"</span>
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3505
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<pre style="margin: 0;">+<span id="LC3505" class="line" lang="plaintext">Fixed serious bug in x86_64 SIMD alignment code introduced in version</span>
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3506
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<pre style="margin: 0;">+<span id="LC3506" class="line" lang="plaintext">2.10.3. Added link to BioConda in README. Fixed bug in fastq_stats</span>
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3507
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<pre style="margin: 0;">+<span id="LC3507" class="line" lang="plaintext">with sequence length 1. Fixed use of equals symbol in UC files for</span>
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<pre style="margin: 0;">+<span id="LC3508" class="line" lang="plaintext">identical sequences with cluster_fast.</span>
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3509
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<pre style="margin: 0;"> <span id="LC3509" class="line" lang="plaintext">.RE</span>
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3510
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<pre style="margin: 0;"> <span id="LC3510" class="line" lang="plaintext">.LP</span>
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3501
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3511
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<pre style="margin: 0;"> <span id="LC3511" class="line" lang="plaintext">.\" ============================================================================</span>
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<li id="67e794015a01b8816bd16290e5f8538236da8245">
<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#67e794015a01b8816bd16290e5f8538236da8245"><strong>src/Makefile.am</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,8 +3,12 @@ bin_PROGRAMS = $(top_builddir)/bin/vsearch</td>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">if</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">TARGET_PPC</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="make"><span class="nv" style="color: teal;">AM_CXXFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: navy;">-Wall</span> <span class="nt" style="color: navy;">-Wsign-compare</span> <span class="nt" style="color: navy;">-O3</span> <span class="nt" style="color: navy;">-g</span> <span class="nt" style="color: navy;">-mcpu</span><span class="o" style="font-weight: 600;">=</span>power8</span>
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5
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5
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">else</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">if</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">TARGET_AARCH64</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="make"><span class="nv" style="color: teal;">AM_CXXFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: navy;">-Wall</span> <span class="nt" style="color: navy;">-Wsign-compare</span> <span class="nt" style="color: navy;">-O3</span> <span class="nt" style="color: navy;">-g</span> <span class="nt" style="color: navy;">-march</span><span class="o" style="font-weight: 600;">=</span>armv8-a+simd <span class="nt" style="color: navy;">-mtune</span><span class="o" style="font-weight: 600;">=</span>generic</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">else</span></span>
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6
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="make"><span class="nv" style="color: teal;">AM_CXXFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nt" style="color: navy;">-Wall</span> <span class="nt" style="color: navy;">-Wsign-compare</span> <span class="nt" style="color: navy;">-O3</span> <span class="nt" style="color: navy;">-g</span> <span class="nt" style="color: navy;">-march</span><span class="o" style="font-weight: 600;">=</span>x86-64 <span class="nt" style="color: navy;">-mtune</span><span class="o" style="font-weight: 600;">=</span>generic</span>
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7
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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8
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="make"></span>
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9
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="make"><span class="nv" style="color: teal;">AM_CFLAGS</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$(AM_CXXFLAGS)</span></span>
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10
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="make"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,12 +70,17 @@ if TARGET_PPC</td>
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66
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="make"><span class="nv" style="color: teal;">libcpu_a_SOURCES</span> <span class="o" style="font-weight: 600;">=</span> cpu.cc <span class="nv" style="color: teal;">$(VSEARCHHEADERS)</span></span>
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67
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71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="make"><span class="nv" style="color: teal;">noinst_LIBRARIES</span> <span class="o" style="font-weight: 600;">=</span> libcpu.a libcityhash.a</span>
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68
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">if</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">TARGET_AARCH64</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="make"><span class="nv" style="color: teal;">libcpu_a_SOURCES</span> <span class="o" style="font-weight: 600;">=</span> cpu.cc <span class="nv" style="color: teal;">$(VSEARCHHEADERS)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="make"><span class="nv" style="color: teal;">noinst_LIBRARIES</span> <span class="o" style="font-weight: 600;">=</span> libcpu.a libcityhash.a</span>
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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">else</span></span>
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69
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="make"><span class="nv" style="color: teal;">libcpu_sse2_a_SOURCES</span> <span class="o" style="font-weight: 600;">=</span> cpu.cc <span class="nv" style="color: teal;">$(VSEARCHHEADERS)</span></span>
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70
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="make"><span class="nv" style="color: teal;">libcpu_sse2_a_CXXFLAGS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">$(AM_CXXFLAGS)</span> <span class="nt" style="color: navy;">-msse2</span></span>
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71
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="make"><span class="nv" style="color: teal;">libcpu_ssse3_a_SOURCES</span> <span class="o" style="font-weight: 600;">=</span> cpu.cc <span class="nv" style="color: teal;">$(VSEARCHHEADERS)</span></span>
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72
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="make"><span class="nv" style="color: teal;">libcpu_ssse3_a_CXXFLAGS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">$(AM_CXXFLAGS)</span> <span class="nt" style="color: navy;">-mssse3</span> <span class="nt" style="color: navy;">-DSSSE3</span></span>
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73
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="make"><span class="nv" style="color: teal;">noinst_LIBRARIES</span> <span class="o" style="font-weight: 600;">=</span> libcpu_sse2.a libcpu_ssse3.a libcityhash.a</span>
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74
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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75
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="make"></span>
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76
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="make"><span class="nv" style="color: teal;">libcityhash_a_SOURCES</span> <span class="o" style="font-weight: 600;">=</span> city.cc city.h</span>
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77
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="make"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,8 +97,12 @@ libcityhash_a_CXXFLAGS = $(AM_CXXFLAGS) -Wno-sign-compare</td>
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88
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">if</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">TARGET_PPC</span></span>
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89
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<td class="diff-line-num new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="make"><span class="nv" style="color: teal;">__top_builddir__bin_vsearch_LDADD</span> <span class="o" style="font-weight: 600;">=</span> libcityhash.a libcpu.a</span>
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90
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<td class="diff-line-num new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">else</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">if</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">TARGET_AARCH64</span></span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="make"><span class="nv" style="color: teal;">__top_builddir__bin_vsearch_LDADD</span> <span class="o" style="font-weight: 600;">=</span> libcityhash.a libcpu.a</span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">else</span></span>
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="make"><span class="nv" style="color: teal;">__top_builddir__bin_vsearch_LDADD</span> <span class="o" style="font-weight: 600;">=</span> libcityhash.a libcpu_ssse3.a libcpu_sse2.a</span>
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="make"></span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="make"></span>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#7bd744d1aedb1ee59d808225be45752dcae8e259"><strong>src/align_simd.cc</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="cpp"></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> VSEARCH: a versatile open source tool for metagenomics</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cpp"></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2014-201<span class="idiff left right">8</span>, Torbjorn Rognes, Frederic Mahe and Tomas Flouri</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2014-201<span class="idiff left right">9</span>, Torbjorn Rognes, Frederic Mahe and Tomas Flouri</span></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> All rights reserved.</span></span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="cpp"></span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Contact: Torbjorn Rognes <torognes@ifi.uio.no>,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,8 +69,6 @@</td>
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69
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> maximize score</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">//#define DEBUG</span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="cpp"></span>
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74
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define CHANNELS 8</span></span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define CDEPTH 4</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -89,14 +87,105 @@</td>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define MAXSEQLENPRODUCT 25000000</span></span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">//#define MAXSEQLENPRODUCT 160000</span></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="cpp"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">scorematrix</span><span class="p">[</span><span class="mi" style="color: #099;">16</span><span class="p">][</span><span class="mi" style="color: #099;">16</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/*</span></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> The macros below usually operate on 128-bit vectors of 8 signed</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> short 16-bit integers. Additions and subtractions should be</span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> saturated. The shift operation should shift left by 2 bytes (one</span></span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> short int) and shift in zeros. The v_mask_gt operation should</span></span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> compare two vectors of signed shorts and return a 16-bit bitmask</span></span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> with pairs of 2 bits set for each element greater in the first than</span></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> in the second argument.</span></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="cpp"><span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="cpp"><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">perm_merge_long_low</span> <span class="o" style="font-weight: 600;">=</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="cpp"> <span class="p">{</span><span class="mh" style="color: #099;">0x00</span><span class="p">,</span> <span class="mh" style="color: #099;">0x01</span><span class="p">,</span> <span class="mh" style="color: #099;">0x02</span><span class="p">,</span> <span class="mh" style="color: #099;">0x03</span><span class="p">,</span> <span class="mh" style="color: #099;">0x04</span><span class="p">,</span> <span class="mh" style="color: #099;">0x05</span><span class="p">,</span> <span class="mh" style="color: #099;">0x06</span><span class="p">,</span> <span class="mh" style="color: #099;">0x07</span><span class="p">,</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="cpp"> <span class="mh" style="color: #099;">0x10</span><span class="p">,</span> <span class="mh" style="color: #099;">0x11</span><span class="p">,</span> <span class="mh" style="color: #099;">0x12</span><span class="p">,</span> <span class="mh" style="color: #099;">0x13</span><span class="p">,</span> <span class="mh" style="color: #099;">0x14</span><span class="p">,</span> <span class="mh" style="color: #099;">0x15</span><span class="p">,</span> <span class="mh" style="color: #099;">0x16</span><span class="p">,</span> <span class="mh" style="color: #099;">0x17</span><span class="p">};</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="cpp"></span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="cpp"><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">perm_merge_long_high</span> <span class="o" style="font-weight: 600;">=</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="cpp"> <span class="p">{</span><span class="mh" style="color: #099;">0x08</span><span class="p">,</span> <span class="mh" style="color: #099;">0x09</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0a</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0b</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0c</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0d</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0e</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0f</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cpp"> <span class="mh" style="color: #099;">0x18</span><span class="p">,</span> <span class="mh" style="color: #099;">0x19</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1a</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1b</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1c</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1d</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1e</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1f</span><span class="p">};</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="cpp"></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_init(a,b,c,d,e,f,g,h) (const VECTOR_SHORT){a,b,c,d,e,f,g,h}</span></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_load(a) vec_ld(0, (VECTOR_SHORT *)(a))</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_store(a, b) vec_st((vector unsigned char)(b), 0, \</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> (vector unsigned char *)(a))</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_add(a, b) vec_adds((a), (b))</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_sub(a, b) vec_subs((a), (b))</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_sub_unsigned(a, b) ((VECTOR_SHORT) \</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> vec_subs((vector unsigned short) (a), \</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> (vector unsigned short) (b)))</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_max(a, b) vec_max((a), (b))</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_min(a, b) vec_min((a), (b))</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_dup(a) vec_splat((VECTOR_SHORT){(short)(a), 0, 0, 0, 0, 0, 0, 0}, 0);</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_zero vec_splat_s16(0)</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_and(a, b) vec_and((a), (b))</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_xor(a, b) vec_xor((a), (b))</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_shift_left(a) vec_sld((a), v_zero, 2)</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="cpp"></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#elif __aarch64__</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="cpp"></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="cpp"><span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">int16x8_t</span> <span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">;</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="cpp"></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="cpp"><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">uint16x8_t</span> <span class="n" style="color: #333;">neon_mask</span> <span class="o" style="font-weight: 600;">=</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="cpp"> <span class="p">{</span><span class="mh" style="color: #099;">0x0003</span><span class="p">,</span> <span class="mh" style="color: #099;">0x000c</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0030</span><span class="p">,</span> <span class="mh" style="color: #099;">0x00c0</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0300</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0c00</span><span class="p">,</span> <span class="mh" style="color: #099;">0x3000</span><span class="p">,</span> <span class="mh" style="color: #099;">0xc000</span><span class="p">};</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="cpp"></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_init(a,b,c,d,e,f,g,h) (const VECTOR_SHORT){a,b,c,d,e,f,g,h}</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_load(a) vld1q_s16((const int16_t *)(a))</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_store(a, b) vst1q_s16((int16_t *)(a), (b))</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_lo_16(a, b) vzip1q_s16((a),(b))</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_hi_16(a, b) vzip2q_s16((a),(b))</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_lo_32(a, b) vreinterpretq_s16_s32(vzip1q_s32(vreinterpretq_s32_s16(a), vreinterpretq_s32_s16(b)))</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_hi_32(a, b) vreinterpretq_s16_s32(vzip2q_s32(vreinterpretq_s32_s16(a), vreinterpretq_s32_s16(b)))</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_lo_64(a, b) vreinterpretq_s16_s64(vcombine_s64(vget_low_s64(vreinterpretq_s64_s16(a)), vget_low_s64(vreinterpretq_s64_s16(b))))</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_hi_64(a, b) vreinterpretq_s16_s64(vcombine_s64(vget_high_s64(vreinterpretq_s64_s16(a)), vget_high_s64(vreinterpretq_s64_s16(b))))</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_add(a, b) vqaddq_s16((a), (b))</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_sub(a, b) vqsubq_s16((a), (b))</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_sub_unsigned(a, b) vreinterpretq_s16_u16(vqsubq_u16(vreinterpretq_u16_s16(a), vreinterpretq_u16_s16(b)))</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_max(a, b) vmaxq_s16((a), (b))</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_min(a, b) vminq_s16((a), (b))</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_dup(a) vdupq_n_s16(a)</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_zero v_dup(0)</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_and(a, b) vandq_s16((a), (b))</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_xor(a, b) veorq_s16((a), (b))</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_shift_left(a) vextq_s16((v_zero), (a), 7)</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_mask_gt(a, b) vaddvq_u16(vandq_u16((vcgtq_s16((a), (b))), neon_mask))</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="cpp"></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#elif __x86_64__</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="cpp"></span>
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99
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="cpp"><span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">__m128i</span> <span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">;</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="cpp"></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_init(a,b,c,d,e,f,g,h) _mm_set_epi16(h,g,f,e,d,c,b,a)</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_load(a) _mm_load_si128((VECTOR_SHORT *)(a))</span></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_store(a, b) _mm_store_si128((VECTOR_SHORT *)(a), (b))</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_lo_16(a, b) _mm_unpacklo_epi16((a),(b))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_hi_16(a, b) _mm_unpackhi_epi16((a),(b))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_lo_32(a, b) _mm_unpacklo_epi32((a),(b))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_hi_32(a, b) _mm_unpackhi_epi32((a),(b))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_lo_64(a, b) _mm_unpacklo_epi64((a),(b))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_merge_hi_64(a, b) _mm_unpackhi_epi64((a),(b))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_add(a, b) _mm_adds_epi16((a), (b))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_sub(a, b) _mm_subs_epi16((a), (b))</span></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_sub_unsigned(a, b) _mm_subs_epu16((a), (b))</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_max(a, b) _mm_max_epi16((a), (b))</span></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_min(a, b) _mm_min_epi16((a), (b))</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_dup(a) _mm_set1_epi16(a)</span></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_zero v_dup(0)</span></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_and(a, b) _mm_and_si128((a), (b))</span></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_xor(a, b) _mm_xor_si128((a), (b))</span></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_shift_left(a) _mm_slli_si128((a), 2)</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define v_mask_gt(a, b) _mm_movemask_epi8(_mm_cmpgt_epi16((a), (b)))</span></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="cpp"></span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="cpp"></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#error Unknown Architecture</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="cpp"></span>
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100
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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101
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="cpp"></span>
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102
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="cpp"><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">s16info_s</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,35 +263,10 @@ void dumpscorematrix(CELL * m)</td>
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174
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263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="cpp"> <span class="p">}</span></span>
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175
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264
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="cpp"><span class="p">}</span></span>
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176
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265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="cpp"></span>
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177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">perm_merge_long_low</span> <span class="o" style="font-weight: 600;">=</span></span>
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179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="cpp"> <span class="p">{</span> <span class="mh" style="color: #099;">0x00</span><span class="p">,</span> <span class="mh" style="color: #099;">0x01</span><span class="p">,</span> <span class="mh" style="color: #099;">0x02</span><span class="p">,</span> <span class="mh" style="color: #099;">0x03</span><span class="p">,</span> <span class="mh" style="color: #099;">0x04</span><span class="p">,</span> <span class="mh" style="color: #099;">0x05</span><span class="p">,</span> <span class="mh" style="color: #099;">0x06</span><span class="p">,</span> <span class="mh" style="color: #099;">0x07</span><span class="p">,</span></span>
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180
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="cpp"> <span class="mh" style="color: #099;">0x10</span><span class="p">,</span> <span class="mh" style="color: #099;">0x11</span><span class="p">,</span> <span class="mh" style="color: #099;">0x12</span><span class="p">,</span> <span class="mh" style="color: #099;">0x13</span><span class="p">,</span> <span class="mh" style="color: #099;">0x14</span><span class="p">,</span> <span class="mh" style="color: #099;">0x15</span><span class="p">,</span> <span class="mh" style="color: #099;">0x16</span><span class="p">,</span> <span class="mh" style="color: #099;">0x17</span> <span class="p">};</span></span>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">perm_merge_long_high</span> <span class="o" style="font-weight: 600;">=</span></span>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="cpp"> <span class="p">{</span> <span class="mh" style="color: #099;">0x08</span><span class="p">,</span> <span class="mh" style="color: #099;">0x09</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0a</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0b</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0c</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0d</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0e</span><span class="p">,</span> <span class="mh" style="color: #099;">0x0f</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="cpp"> <span class="mh" style="color: #099;">0x18</span><span class="p">,</span> <span class="mh" style="color: #099;">0x19</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1a</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1b</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1c</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1d</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1e</span><span class="p">,</span> <span class="mh" style="color: #099;">0x1f</span> <span class="p">};</span></span>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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186
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="cpp"></span>
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187
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266
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">dprofile_fill16</span><span class="p">(</span><span class="n" style="color: #333;">CELL</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">dprofile_word</span><span class="p">,</span></span>
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188
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="cpp"> <span class="n" style="color: #333;">CELL</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">score_matrix_word</span><span class="p">,</span></span>
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189
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="cpp"> <span class="n" style="color: #333;">BYTE</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">dseq</span><span class="p">)</span></span>
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190
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="cpp"><span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">,</span> <span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">,</span> <span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">,</span> <span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<td class="diff-line-num new_line old" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">,</span><span class="n" style="color: #333;">reg11</span><span class="p">,</span><span class="n" style="color: #333;">reg12</span><span class="p">,</span><span class="n" style="color: #333;">reg13</span><span class="p">,</span><span class="n" style="color: #333;">reg14</span><span class="p">,</span><span class="n" style="color: #333;">reg15</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<td class="diff-line-num new_line old" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">reg16</span><span class="p">,</span><span class="n" style="color: #333;">reg17</span><span class="p">,</span><span class="n" style="color: #333;">reg18</span><span class="p">,</span><span class="n" style="color: #333;">reg19</span><span class="p">,</span><span class="n" style="color: #333;">reg20</span><span class="p">,</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span><span class="n" style="color: #333;">reg22</span><span class="p">,</span><span class="n" style="color: #333;">reg23</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<td class="diff-line-num new_line old" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">reg24</span><span class="p">,</span><span class="n" style="color: #333;">reg25</span><span class="p">,</span><span class="n" style="color: #333;">reg26</span><span class="p">,</span><span class="n" style="color: #333;">reg27</span><span class="p">,</span><span class="n" style="color: #333;">reg28</span><span class="p">,</span><span class="n" style="color: #333;">reg29</span><span class="p">,</span><span class="n" style="color: #333;">reg30</span><span class="p">,</span><span class="n" style="color: #333;">reg31</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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197
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">,</span> <span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">,</span> <span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">,</span> <span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">,</span> <span class="n" style="color: #333;">reg11</span><span class="p">,</span> <span class="n" style="color: #333;">reg12</span><span class="p">,</span> <span class="n" style="color: #333;">reg13</span><span class="p">,</span> <span class="n" style="color: #333;">reg14</span><span class="p">,</span> <span class="n" style="color: #333;">reg15</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg16</span><span class="p">,</span> <span class="n" style="color: #333;">reg17</span><span class="p">,</span> <span class="n" style="color: #333;">reg18</span><span class="p">,</span> <span class="n" style="color: #333;">reg19</span><span class="p">,</span> <span class="n" style="color: #333;">reg20</span><span class="p">,</span> <span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg22</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg24</span><span class="p">,</span> <span class="n" style="color: #333;">reg25</span><span class="p">,</span> <span class="n" style="color: #333;">reg26</span><span class="p">,</span> <span class="n" style="color: #333;">reg27</span><span class="p">,</span> <span class="n" style="color: #333;">reg28</span><span class="p">,</span> <span class="n" style="color: #333;">reg29</span><span class="p">,</span> <span class="n" style="color: #333;">reg30</span><span class="p">,</span> <span class="n" style="color: #333;">reg31</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* does not require ssse3 */</span></span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* approx 4*(5*8+2*40)=480 instructions */</span></span>
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;">#if 0</span></span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> dumpscorematrix(score_matrix_word);</span></span>
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,16 +286,29 @@ void dprofile_fill16(CELL * dprofile_word,</td>
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;"><</span><span class="mi" style="color: #099;">16</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">8</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="cpp"> <span class="n" style="color: #333;">reg0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="cpp"> <span class="n" style="color: #333;">reg1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="cpp"> <span class="n" style="color: #333;">reg2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="cpp"> <span class="n" style="color: #333;">reg3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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230
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="cpp"> <span class="n" style="color: #333;">reg4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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231
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="cpp"> <span class="n" style="color: #333;">reg5</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">5</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="cpp"> <span class="n" style="color: #333;">reg6</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">6</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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233
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="cpp"> <span class="n" style="color: #333;">reg7</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_ld</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">7</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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<td class="diff-line-num new new_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">,</span> <span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">,</span> <span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">,</span> <span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">,</span><span class="n" style="color: #333;">reg11</span><span class="p">,</span><span class="n" style="color: #333;">reg12</span><span class="p">,</span><span class="n" style="color: #333;">reg13</span><span class="p">,</span><span class="n" style="color: #333;">reg14</span><span class="p">,</span><span class="n" style="color: #333;">reg15</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">reg16</span><span class="p">,</span><span class="n" style="color: #333;">reg17</span><span class="p">,</span><span class="n" style="color: #333;">reg18</span><span class="p">,</span><span class="n" style="color: #333;">reg19</span><span class="p">,</span><span class="n" style="color: #333;">reg20</span><span class="p">,</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span><span class="n" style="color: #333;">reg22</span><span class="p">,</span><span class="n" style="color: #333;">reg23</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">reg24</span><span class="p">,</span><span class="n" style="color: #333;">reg25</span><span class="p">,</span><span class="n" style="color: #333;">reg26</span><span class="p">,</span><span class="n" style="color: #333;">reg27</span><span class="p">,</span><span class="n" style="color: #333;">reg28</span><span class="p">,</span><span class="n" style="color: #333;">reg29</span><span class="p">,</span><span class="n" style="color: #333;">reg30</span><span class="p">,</span><span class="n" style="color: #333;">reg31</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">,</span> <span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">,</span> <span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">,</span> <span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">,</span> <span class="n" style="color: #333;">reg11</span><span class="p">,</span> <span class="n" style="color: #333;">reg12</span><span class="p">,</span> <span class="n" style="color: #333;">reg13</span><span class="p">,</span> <span class="n" style="color: #333;">reg14</span><span class="p">,</span> <span class="n" style="color: #333;">reg15</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg16</span><span class="p">,</span> <span class="n" style="color: #333;">reg17</span><span class="p">,</span> <span class="n" style="color: #333;">reg18</span><span class="p">,</span> <span class="n" style="color: #333;">reg19</span><span class="p">,</span> <span class="n" style="color: #333;">reg20</span><span class="p">,</span> <span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg22</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">reg24</span><span class="p">,</span> <span class="n" style="color: #333;">reg25</span><span class="p">,</span> <span class="n" style="color: #333;">reg26</span><span class="p">,</span> <span class="n" style="color: #333;">reg27</span><span class="p">,</span> <span class="n" style="color: #333;">reg28</span><span class="p">,</span> <span class="n" style="color: #333;">reg29</span><span class="p">,</span> <span class="n" style="color: #333;">reg30</span><span class="p">,</span> <span class="n" style="color: #333;">reg31</span><span class="p">;</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="cpp"></span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="cpp"> <span class="n" style="color: #333;">reg0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="cpp"> <span class="n" style="color: #333;">reg1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="cpp"> <span class="n" style="color: #333;">reg2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="cpp"> <span class="n" style="color: #333;">reg3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="cpp"> <span class="n" style="color: #333;">reg4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="cpp"> <span class="n" style="color: #333;">reg5</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">5</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="cpp"> <span class="n" style="color: #333;">reg6</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">6</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="cpp"> <span class="n" style="color: #333;">reg7</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_load</span><span class="p">(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">7</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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235
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="cpp"> <span class="n" style="color: #333;">reg8</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">vec_mergeh</span><span class="p">(</span><span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">);</span></span>
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236
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313
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="cpp"> <span class="n" style="color: #333;">reg9</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">vec_mergel</span><span class="p">(</span><span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">);</span></span>
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237
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="cpp"> <span class="n" style="color: #333;">reg10</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">)</span> <span class="n" style="color: #333;">vec_mergeh</span><span class="p">(</span><span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -266,79 +343,43 @@ void dprofile_fill16(CELL * dprofile_word,</td>
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266
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343
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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267
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344
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="cpp"> <span class="n" style="color: #333;">reg31</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span><span class="p">)</span> <span class="n" style="color: #333;">vec_perm</span></span>
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268
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345
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_high</span><span class="p">);</span></span>
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269
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="cpp"></span>
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270
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg24</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
271
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
272
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg25</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
273
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
274
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg26</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
275
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">2</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg27</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
277
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
278
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg28</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
279
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">4</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
280
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg29</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
281
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">5</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
282
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg30</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
283
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<td class="diff-line-num new_line old" data-linenumber="346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">6</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span><span class="n" style="color: #333;">reg31</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">7</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="cpp"> <span class="n" style="color: #333;">reg0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="cpp"> <span class="n" style="color: #333;">reg1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="cpp"> <span class="n" style="color: #333;">reg2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="cpp"> <span class="n" style="color: #333;">reg3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="cpp"> <span class="n" style="color: #333;">reg4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="cpp"> <span class="n" style="color: #333;">reg5</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">5</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="cpp"> <span class="n" style="color: #333;">reg6</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">6</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="cpp"> <span class="n" style="color: #333;">reg7</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_load_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">score_matrix_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">d</span><span class="p">[</span><span class="mi" style="color: #099;">7</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="cpp"></span>
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298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="cpp"> <span class="n" style="color: #333;">reg8</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">);</span></span>
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299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="cpp"> <span class="n" style="color: #333;">reg9</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">);</span></span>
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300
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="cpp"> <span class="n" style="color: #333;">reg10</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
301
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="cpp"> <span class="n" style="color: #333;">reg11</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
302
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="cpp"> <span class="n" style="color: #333;">reg12</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
303
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="cpp"> <span class="n" style="color: #333;">reg13</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
304
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="cpp"> <span class="n" style="color: #333;">reg14</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
305
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="cpp"> <span class="n" style="color: #333;">reg15</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi16</span><span class="p">(</span><span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
306
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
307
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="cpp"> <span class="n" style="color: #333;">reg16</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
308
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="cpp"> <span class="n" style="color: #333;">reg17</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
309
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="cpp"> <span class="n" style="color: #333;">reg18</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg12</span><span class="p">,</span> <span class="n" style="color: #333;">reg14</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
310
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="cpp"> <span class="n" style="color: #333;">reg19</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg12</span><span class="p">,</span> <span class="n" style="color: #333;">reg14</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
311
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC311" class="line" lang="cpp"> <span class="n" style="color: #333;">reg20</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg11</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
312
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="cpp"> <span class="n" style="color: #333;">reg21</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg11</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
313
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="cpp"> <span class="n" style="color: #333;">reg22</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg13</span><span class="p">,</span> <span class="n" style="color: #333;">reg15</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
314
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="cpp"> <span class="n" style="color: #333;">reg23</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi32</span><span class="p">(</span><span class="n" style="color: #333;">reg13</span><span class="p">,</span> <span class="n" style="color: #333;">reg15</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
315
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
316
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="cpp"> <span class="n" style="color: #333;">reg24</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg16</span><span class="p">,</span> <span class="n" style="color: #333;">reg18</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
317
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="cpp"> <span class="n" style="color: #333;">reg25</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg16</span><span class="p">,</span> <span class="n" style="color: #333;">reg18</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
318
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="cpp"> <span class="n" style="color: #333;">reg26</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg17</span><span class="p">,</span> <span class="n" style="color: #333;">reg19</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
319
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<td class="diff-line-num new_line old" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC319" class="line" lang="cpp"> <span class="n" style="color: #333;">reg27</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg17</span><span class="p">,</span> <span class="n" style="color: #333;">reg19</span><span class="p">);</span></span>
</pre>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="cpp"> <span class="n" style="color: #333;">reg28</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg20</span><span class="p">,</span> <span class="n" style="color: #333;">reg22</span><span class="p">);</span></span>
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321
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<pre style="margin: 0;">-<span id="LC321" class="line" lang="cpp"> <span class="n" style="color: #333;">reg29</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg20</span><span class="p">,</span> <span class="n" style="color: #333;">reg22</span><span class="p">);</span></span>
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322
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<pre style="margin: 0;">-<span id="LC322" class="line" lang="cpp"> <span class="n" style="color: #333;">reg30</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpacklo_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">);</span></span>
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323
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<pre style="margin: 0;">-<span id="LC323" class="line" lang="cpp"> <span class="n" style="color: #333;">reg31</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_unpackhi_epi64</span><span class="p">(</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">);</span></span>
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324
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<pre style="margin: 0;">-<span id="LC324" class="line" lang="cpp"></span>
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325
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<pre style="margin: 0;">-<span id="LC325" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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326
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<pre style="margin: 0;">-<span id="LC326" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg24</span><span class="p">);</span></span>
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327
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<pre style="margin: 0;">-<span id="LC327" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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328
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<pre style="margin: 0;">-<span id="LC328" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg25</span><span class="p">);</span></span>
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329
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<pre style="margin: 0;">-<span id="LC329" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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330
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<pre style="margin: 0;">-<span id="LC330" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">2</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg26</span><span class="p">);</span></span>
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331
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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332
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<pre style="margin: 0;">-<span id="LC332" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg27</span><span class="p">);</span></span>
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333
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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334
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">4</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg28</span><span class="p">);</span></span>
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335
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<pre style="margin: 0;">-<span id="LC335" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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336
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<pre style="margin: 0;">-<span id="LC336" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">5</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg29</span><span class="p">);</span></span>
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337
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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338
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">6</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg30</span><span class="p">);</span></span>
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339
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_store_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span></span>
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340
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="cpp"> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">7</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">),</span> <span class="n" style="color: #333;">reg31</span><span class="p">);</span></span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="cpp"> <span class="n" style="color: #333;">reg8</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_16</span><span class="p">(</span><span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">);</span></span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="cpp"> <span class="n" style="color: #333;">reg9</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_16</span><span class="p">(</span><span class="n" style="color: #333;">reg0</span><span class="p">,</span> <span class="n" style="color: #333;">reg1</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="cpp"> <span class="n" style="color: #333;">reg10</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_16</span><span class="p">(</span><span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">);</span></span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="cpp"> <span class="n" style="color: #333;">reg11</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_16</span><span class="p">(</span><span class="n" style="color: #333;">reg2</span><span class="p">,</span> <span class="n" style="color: #333;">reg3</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="cpp"> <span class="n" style="color: #333;">reg12</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_16</span><span class="p">(</span><span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">);</span></span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="cpp"> <span class="n" style="color: #333;">reg13</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_16</span><span class="p">(</span><span class="n" style="color: #333;">reg4</span><span class="p">,</span> <span class="n" style="color: #333;">reg5</span><span class="p">);</span></span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="cpp"> <span class="n" style="color: #333;">reg14</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_16</span><span class="p">(</span><span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">);</span></span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="cpp"> <span class="n" style="color: #333;">reg15</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_16</span><span class="p">(</span><span class="n" style="color: #333;">reg6</span><span class="p">,</span> <span class="n" style="color: #333;">reg7</span><span class="p">);</span></span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="cpp"></span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="cpp"> <span class="n" style="color: #333;">reg16</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_32</span><span class="p">(</span><span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">);</span></span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="cpp"> <span class="n" style="color: #333;">reg17</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_32</span><span class="p">(</span><span class="n" style="color: #333;">reg8</span><span class="p">,</span> <span class="n" style="color: #333;">reg10</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="cpp"> <span class="n" style="color: #333;">reg18</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_32</span><span class="p">(</span><span class="n" style="color: #333;">reg12</span><span class="p">,</span> <span class="n" style="color: #333;">reg14</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="cpp"> <span class="n" style="color: #333;">reg19</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_32</span><span class="p">(</span><span class="n" style="color: #333;">reg12</span><span class="p">,</span> <span class="n" style="color: #333;">reg14</span><span class="p">);</span></span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="cpp"> <span class="n" style="color: #333;">reg20</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_32</span><span class="p">(</span><span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg11</span><span class="p">);</span></span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="cpp"> <span class="n" style="color: #333;">reg21</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_32</span><span class="p">(</span><span class="n" style="color: #333;">reg9</span><span class="p">,</span> <span class="n" style="color: #333;">reg11</span><span class="p">);</span></span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="cpp"> <span class="n" style="color: #333;">reg22</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_32</span><span class="p">(</span><span class="n" style="color: #333;">reg13</span><span class="p">,</span> <span class="n" style="color: #333;">reg15</span><span class="p">);</span></span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="cpp"> <span class="n" style="color: #333;">reg23</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_32</span><span class="p">(</span><span class="n" style="color: #333;">reg13</span><span class="p">,</span> <span class="n" style="color: #333;">reg15</span><span class="p">);</span></span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="cpp"></span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="cpp"> <span class="n" style="color: #333;">reg24</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_64</span><span class="p">(</span><span class="n" style="color: #333;">reg16</span><span class="p">,</span> <span class="n" style="color: #333;">reg18</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="366" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="cpp"> <span class="n" style="color: #333;">reg25</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_64</span><span class="p">(</span><span class="n" style="color: #333;">reg16</span><span class="p">,</span> <span class="n" style="color: #333;">reg18</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="cpp"> <span class="n" style="color: #333;">reg26</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_64</span><span class="p">(</span><span class="n" style="color: #333;">reg17</span><span class="p">,</span> <span class="n" style="color: #333;">reg19</span><span class="p">);</span></span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="cpp"> <span class="n" style="color: #333;">reg27</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_64</span><span class="p">(</span><span class="n" style="color: #333;">reg17</span><span class="p">,</span> <span class="n" style="color: #333;">reg19</span><span class="p">);</span></span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="cpp"> <span class="n" style="color: #333;">reg28</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_64</span><span class="p">(</span><span class="n" style="color: #333;">reg20</span><span class="p">,</span> <span class="n" style="color: #333;">reg22</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="cpp"> <span class="n" style="color: #333;">reg29</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_64</span><span class="p">(</span><span class="n" style="color: #333;">reg20</span><span class="p">,</span> <span class="n" style="color: #333;">reg22</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="cpp"> <span class="n" style="color: #333;">reg30</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_lo_64</span><span class="p">(</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="cpp"> <span class="n" style="color: #333;">reg31</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_merge_hi_64</span><span class="p">(</span><span class="n" style="color: #333;">reg21</span><span class="p">,</span> <span class="n" style="color: #333;">reg23</span><span class="p">);</span></span>
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341
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373
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<pre style="margin: 0;"> <span id="LC373" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="cpp"></span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg24</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg25</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">2</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg26</span><span class="p">);</span></span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg27</span><span class="p">);</span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">4</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg28</span><span class="p">);</span></span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">5</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg29</span><span class="p">);</span></span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">6</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg30</span><span class="p">);</span></span>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="n" style="color: #333;">dprofile_word</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CDEPTH</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">7</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="p">,</span> <span class="n" style="color: #333;">reg31</span><span class="p">);</span></span>
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342
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383
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="cpp"> <span class="p">}</span></span>
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343
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384
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="cpp"> <span class="p">}</span></span>
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344
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385
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;">#if 0</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -370,6 +411,9 @@ void dprofile_fill16(CELL * dprofile_word,</td>
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370
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411
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define VECTORBYTEPERMUTE vec_vbpermq</span></span>
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371
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412
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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372
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413
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<pre style="margin: 0;"> <span id="LC413" class="line" lang="cpp"></span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/* The VSX vec_bperm instruction puts the 16 selected bits of the first</span></span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> source into bits 48-63 of the destination. */</span></span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="cpp"></span>
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373
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417
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="cpp"><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">perm</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span> <span class="mi" style="color: #099;">120</span><span class="p">,</span> <span class="mi" style="color: #099;">112</span><span class="p">,</span> <span class="mi" style="color: #099;">104</span><span class="p">,</span> <span class="mi" style="color: #099;">96</span><span class="p">,</span> <span class="mi" style="color: #099;">88</span><span class="p">,</span> <span class="mi" style="color: #099;">80</span><span class="p">,</span> <span class="mi" style="color: #099;">72</span><span class="p">,</span> <span class="mi" style="color: #099;">64</span><span class="p">,</span></span>
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374
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418
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<pre style="margin: 0;"> <span id="LC418" class="line" lang="cpp"> <span class="mi" style="color: #099;">56</span><span class="p">,</span> <span class="mi" style="color: #099;">48</span><span class="p">,</span> <span class="mi" style="color: #099;">40</span><span class="p">,</span> <span class="mi" style="color: #099;">32</span><span class="p">,</span> <span class="mi" style="color: #099;">24</span><span class="p">,</span> <span class="mi" style="color: #099;">16</span><span class="p">,</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span> <span class="p">};</span></span>
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375
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419
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<pre style="margin: 0;"> <span id="LC419" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="378" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -378,27 +422,27 @@ const vector unsigned char perm = { 120, 112, 104, 96, 88, 80, 72, 64,</td>
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378
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422
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> vector unsigned short W, X, Y, Z; \</span></span>
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379
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423
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<pre style="margin: 0;"> <span id="LC423" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> vector unsigned int WX, YZ; \</span></span>
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380
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424
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<pre style="margin: 0;"> <span id="LC424" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> vector short VV; \</span></span>
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381
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> VV = v<span class="idiff left right">ec_ld(0, &(V));</span> \</span></span>
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382
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = v<span class="idiff left right">ec_adds(H, VV);</span> \</span></span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> VV = v<span class="idiff left right">_load(&V); </span> \</span></span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = v<span class="idiff left right">_add(H, VV); </span> \</span></span>
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383
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427
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<pre style="margin: 0;"> <span id="LC427" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> W = (vector unsigned short) VECTORBYTEPERMUTE \</span></span>
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384
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428
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<pre style="margin: 0;"> <span id="LC428" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> ((vector unsigned char) vec_cmpgt(F, H), perm); \</span></span>
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385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = v<span class="idiff left right">ec_max(H, F);</span> \</span></span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = v<span class="idiff left right">_max(H, F); </span> \</span></span>
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386
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430
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<pre style="margin: 0;"> <span id="LC430" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> X = (vector unsigned short) VECTORBYTEPERMUTE \</span></span>
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387
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431
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<pre style="margin: 0;"> <span id="LC431" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> ((vector unsigned char) vec_cmpgt(E, H), perm); \</span></span>
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388
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<pre style="margin: 0;">-<span id="LC388" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = v<span class="idiff left right">ec_max(H, E);</span> \</span></span>
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389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MIN = v<span class="idiff left right">ec_min(H_MIN, H);</span> \</span></span>
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390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MAX = v<span class="idiff left right">ec_max(H_MAX, H);</span> \</span></span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = v<span class="idiff left right">_max(H, E); </span> \</span></span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MIN = v<span class="idiff left right">_min(H_MIN, H); </span> \</span></span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MAX = v<span class="idiff left right">_max(H_MAX, H); </span> \</span></span>
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391
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435
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> N = H; \</span></span>
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392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HF = v<span class="idiff left right">ec_subs(H, QR_t);</span> \</span></span>
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393
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = v<span class="idiff left right">ec_subs(F, R_t);</span> \</span></span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HF = v<span class="idiff left right">_sub(H, QR_t); </span> \</span></span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = v<span class="idiff left right">_sub(F, R_t); </span> \</span></span>
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394
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438
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<pre style="margin: 0;"> <span id="LC438" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> Y = (vector unsigned short) VECTORBYTEPERMUTE \</span></span>
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395
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439
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<pre style="margin: 0;"> <span id="LC439" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> ((vector unsigned char) vec_cmpgt(F, HF), perm); \</span></span>
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396
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = v<span class="idiff left right">ec_max(F, HF);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HE = v<span class="idiff left right">ec_subs(H, QR_q);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = v<span class="idiff left right">ec_subs(E, R_q);</span> \</span></span>
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = v<span class="idiff left right">_max(F, HF); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HE = v<span class="idiff left right">_sub(H, QR_q); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = v<span class="idiff left right">_sub(E, R_q); </span> \</span></span>
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<pre style="margin: 0;"> <span id="LC443" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> Z = (vector unsigned short) VECTORBYTEPERMUTE \</span></span>
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> ((vector unsigned char) vec_cmpgt(E, HE), perm); \</span></span>
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = v<span class="idiff left right">ec_max(E, HE);</span> \</span></span>
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = v<span class="idiff left right">_max(E, HE); </span> \</span></span>
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<pre style="margin: 0;"> <span id="LC446" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> WX = (vector unsigned int) vec_mergel(W, X); \</span></span>
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<pre style="margin: 0;"> <span id="LC447" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> YZ = (vector unsigned int) vec_mergel(Y, Z); \</span></span>
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<pre style="margin: 0;"> <span id="LC448" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> RES = (vector unsigned long long) vec_mergeh(WX, YZ); \</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -406,23 +450,25 @@ const vector unsigned char perm = { 120, 112, 104, 96, 88, 80, 72, 64,</td>
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<pre style="margin: 0;"> <span id="LC450" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC451" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;"> <span id="LC452" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/* x86_64 & aarch64 */</span></span>
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC455" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define ALIGNCORE(H, N, F, V, PATH, QR_q, R_q, QR_t, R_t, H_MIN, H_MAX) \</span></span>
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = <span class="idiff left right">_mm_adds_epi16(H, V);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+0) = <span class="idiff left right">_mm_movemask_epi8(_mm_cmpgt_epi16(F, H));</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = <span class="idiff left right">_mm_max_epi16(H, F);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+1) = <span class="idiff left right">_mm_movemask_epi8(_mm_cmpgt_epi16(E, H));</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = <span class="idiff left right">_mm_max_epi16(H, E);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MIN = <span class="idiff left right">_mm_min_epi16(H_MIN, H);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MAX = <span class="idiff left right">_mm_max_epi16(H_MAX, H);</span> \</span></span>
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = <span class="idiff left right">v_add(H, V); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+0) = <span class="idiff left right">v_mask_gt(F, H); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = <span class="idiff left right">v_max(H, F); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+1) = <span class="idiff left right">v_mask_gt(E, H); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H = <span class="idiff left right">v_max(H, E); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MIN = <span class="idiff left right">v_min(H_MIN, H); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> H_MAX = <span class="idiff left right">v_max(H_MAX, H); </span> \</span></span>
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> N = H; \</span></span>
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HF = <span class="idiff left right">_mm_subs_epi16(H, QR_t);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = <span class="idiff left right">_mm_subs_epi16(F, R_t);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+2) = <span class="idiff left right">_mm_movemask_epi8(_mm_cmpgt_epi16(F, HF));</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = <span class="idiff left right">_mm_max_epi16(F, HF);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HE = <span class="idiff left right">_mm_subs_epi16(H, QR_q);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = <span class="idiff left right">_mm_subs_epi16(E, R_q);</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+3) = <span class="idiff left right">_mm_movemask_epi8(_mm_cmpgt_epi16(E, HE));</span> \</span></span>
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = <span class="idiff left right">_mm_max_epi16</span>(E, HE);</span></span>
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HF = <span class="idiff left right">v_sub(H, QR_t); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = <span class="idiff left right">v_sub(F, R_t); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+2) = <span class="idiff left right">v_mask_gt(F, HF); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> F = <span class="idiff left right">v_max(F, HF); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> HE = <span class="idiff left right">v_sub(H, QR_q); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = <span class="idiff left right">v_sub(E, R_q); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> *(PATH+3) = <span class="idiff left right">v_mask_gt(E, HE); </span> \</span></span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> E = <span class="idiff left right">v_max</span>(E, HE);</span></span>
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -459,22 +505,24 @@ void aligncolumns_first(VECTOR_SHORT * Sm,</td>
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<pre style="margin: 0;"> <span id="LC505" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">ql</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC506" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">dir</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC507" class="line" lang="cpp"><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;"> <span id="LC508" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC509" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">HE</span><span class="p">,</span> <span class="n" style="color: #333;">HF</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC510" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">vp</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC511" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC514" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;"> <span id="LC516" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">RES</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC518" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC519" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC520" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC474" class="line" lang="cpp"> <span class="n" style="color: #333;">f0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="cpp"> <span class="n" style="color: #333;">f1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="cpp"> <span class="n" style="color: #333;">f2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="cpp"> <span class="n" style="color: #333;">f3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="cpp"> <span class="n" style="color: #333;">f0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="cpp"> <span class="n" style="color: #333;">f1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="cpp"> <span class="n" style="color: #333;">f2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="cpp"> <span class="n" style="color: #333;">f3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC526" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC527" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">ql</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC528" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -492,32 +540,38 @@ void aligncolumns_first(VECTOR_SHORT * Sm,</td>
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<pre style="margin: 0;"> <span id="LC540" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Then use signed subtraction to obtain the correct value.</span></span>
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<pre style="margin: 0;"> <span id="LC541" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;"> <span id="LC542" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)</span> <span class="n" style="color: #333;">h4</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)</span> <span class="n" style="color: #333;">Mm</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_t_left</span><span class="p">);</span></span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub_unsigned</span><span class="p">(</span><span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">Mm</span><span class="p">);</span></span>
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544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_t_left</span><span class="p">);</span></span>
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498
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<pre style="margin: 0;"> <span id="LC545" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)</span> <span class="n" style="color: #333;">E</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)</span> <span class="n" style="color: #333;">Mm</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_t_left</span><span class="p">);</span></span>
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502
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_q_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub_unsigned</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">Mm</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_t_left</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_q_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_t_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">ec_adds</span></span><span class="p">(</span><span class="n" style="color: #333;">M_QR_t_left</span><span class="p">,</span> <span class="n" style="color: #333;">M_R_t_left</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_t_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_add</span></span><span class="p">(</span><span class="n" style="color: #333;">M_QR_t_left</span><span class="p">,</span> <span class="n" style="color: #333;">M_R_t_left</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC551" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;"> <span id="LC553" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC554" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC555" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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509
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556
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<pre style="margin: 0;"> <span id="LC556" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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510
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557
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<pre style="margin: 0;"> <span id="LC557" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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511
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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512
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="cpp"></span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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514
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559
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<pre style="margin: 0;"> <span id="LC559" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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515
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560
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<pre style="margin: 0;"> <span id="LC560" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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516
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561
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<pre style="margin: 0;"> <span id="LC561" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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517
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562
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<pre style="margin: 0;"> <span id="LC562" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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518
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563
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<pre style="margin: 0;"> <span id="LC563" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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519
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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520
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">8</span><span class="p">));</span></span>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">8</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">4</span><span class="p">,</span></span>
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569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">8</span><span class="p">,</span></span>
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571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">12</span><span class="p">,</span></span>
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573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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575
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<pre style="margin: 0;"> <span id="LC575" class="line" lang="cpp"></span>
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576
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<pre style="margin: 0;"> <span id="LC576" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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577
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<pre style="margin: 0;"> <span id="LC577" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -534,107 +588,25 @@ void aligncolumns_first(VECTOR_SHORT * Sm,</td>
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<pre style="margin: 0;"> <span id="LC588" class="line" lang="cpp"></span>
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589
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<pre style="margin: 0;"> <span id="LC589" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">];</span></span>
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536
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590
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<pre style="margin: 0;"> <span id="LC590" class="line" lang="cpp"></span>
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537
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<pre style="margin: 0;">-<span id="LC537" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">vector</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">short</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">vec_subs</span></span><span class="p"><span class="idiff">((</span></span><span class="n" style="color: #333;"><span class="idiff">vector</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">unsigned</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">short</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">E</span></span><span class="p"><span class="idiff right">,</span></span></span>
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="cpp"> <span class="idiff left"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">vector</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">unsigned</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">short</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">Mm</span></span><span class="p">);</span></span>
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539
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">vec_subs</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">E</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">M_QR_t_lef</span>t</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC540" class="line" lang="cpp"><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">E</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">vec_subs</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">E</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">M_QR_q_right</span></span><span class="p"><span class="idiff right">);</span></span></span>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">v_sub_unsigned</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">E</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Mm</span></span><span class="p"><span class="idiff right">);</span></span></span>
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592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">E</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">v_sub</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">E</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">M_QR_t_left</span></span><span class="p">);</span></span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">v_sub</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">E</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">M_QR_q_righ</span>t</span><span class="p">);</span></span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC595" class="line" lang="cpp"></span>
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596
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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542
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597
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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543
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598
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<pre style="margin: 0;"> <span id="LC598" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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544
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599
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<pre style="margin: 0;"> <span id="LC599" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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545
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600
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<pre style="margin: 0;"> <span id="LC600" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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546
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601
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<pre style="margin: 0;"> <span id="LC601" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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547
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<pre style="margin: 0;">-<span id="LC547" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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548
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<pre style="margin: 0;">-<span id="LC548" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC549" class="line" lang="cpp"></span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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550
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603
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<pre style="margin: 0;"> <span id="LC603" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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551
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604
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<pre style="margin: 0;"> <span id="LC604" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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552
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605
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<pre style="margin: 0;"> <span id="LC605" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC606" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC607" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC555" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC556" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">8</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC557" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC558" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC561" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h5</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC562" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h6</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC563" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h7</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC568" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">8</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC609" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC570" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC571" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">HE</span><span class="p">,</span> <span class="n" style="color: #333;">HF</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC572" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">vp</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC573" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC574" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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575
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<pre style="margin: 0;">-<span id="LC575" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC576" class="line" lang="cpp"></span>
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577
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<pre style="margin: 0;">-<span id="LC577" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC578" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC579" class="line" lang="cpp"> <span class="n" style="color: #333;">f0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">);</span></span>
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580
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<pre style="margin: 0;">-<span id="LC580" class="line" lang="cpp"> <span class="n" style="color: #333;">f1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">);</span></span>
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581
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<pre style="margin: 0;">-<span id="LC581" class="line" lang="cpp"> <span class="n" style="color: #333;">f2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">);</span></span>
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582
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<pre style="margin: 0;">-<span id="LC582" class="line" lang="cpp"> <span class="n" style="color: #333;">f3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">);</span></span>
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583
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<pre style="margin: 0;">-<span id="LC583" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC584" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">ql</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC585" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC586" class="line" lang="cpp"> <span class="n" style="color: #333;">vp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qp</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC587" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC588" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC589" class="line" lang="cpp"></span>
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590
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<pre style="margin: 0;">-<span id="LC590" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">];</span></span>
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591
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<pre style="margin: 0;">-<span id="LC591" class="line" lang="cpp"></span>
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592
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<pre style="margin: 0;">-<span id="LC592" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/*</span></span>
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Initialize selected h and e values for next/this round.</span></span>
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> First zero those cells where a new sequence starts</span></span>
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<pre style="margin: 0;">-<span id="LC595" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> by using an unsigned saturated subtraction of a huge value to</span></span>
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<pre style="margin: 0;">-<span id="LC596" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> set it to zero.</span></span>
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<pre style="margin: 0;">-<span id="LC597" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Then use signed subtraction to obtain the correct value.</span></span>
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<pre style="margin: 0;">-<span id="LC598" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;">-<span id="LC599" class="line" lang="cpp"></span>
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600
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<pre style="margin: 0;">-<span id="LC600" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epu16</span><span class="p">(</span><span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">Mm</span><span class="p">);</span></span>
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601
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<pre style="margin: 0;">-<span id="LC601" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_t_left</span><span class="p">);</span></span>
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602
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<pre style="margin: 0;">-<span id="LC602" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC603" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epu16</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">Mm</span><span class="p">);</span></span>
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604
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<pre style="margin: 0;">-<span id="LC604" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_t_left</span><span class="p">);</span></span>
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605
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<pre style="margin: 0;">-<span id="LC605" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_q_interior</span><span class="p">);</span></span>
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606
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<pre style="margin: 0;">-<span id="LC606" class="line" lang="cpp"></span>
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607
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<pre style="margin: 0;">-<span id="LC607" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_t_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_adds_epi16</span><span class="p">(</span><span class="n" style="color: #333;">M_QR_t_left</span><span class="p">,</span> <span class="n" style="color: #333;">M_R_t_left</span><span class="p">);</span></span>
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608
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<pre style="margin: 0;">-<span id="LC608" class="line" lang="cpp"></span>
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609
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<pre style="margin: 0;">-<span id="LC609" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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610
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<pre style="margin: 0;">-<span id="LC610" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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611
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<pre style="margin: 0;">-<span id="LC611" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">4</span><span class="p">,</span></span>
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612
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<pre style="margin: 0;">-<span id="LC612" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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613
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<pre style="margin: 0;">-<span id="LC613" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">8</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC614" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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615
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<pre style="margin: 0;">-<span id="LC615" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">12</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC616" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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617
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<pre style="margin: 0;">-<span id="LC617" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC618" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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619
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<pre style="margin: 0;">-<span id="LC619" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC620" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC621" class="line" lang="cpp"> <span class="n" style="color: #333;">h0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h4</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC622" class="line" lang="cpp"> <span class="n" style="color: #333;">h1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h5</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC623" class="line" lang="cpp"> <span class="n" style="color: #333;">h2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h6</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC624" class="line" lang="cpp"> <span class="n" style="color: #333;">h3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h7</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC625" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC626" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC627" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* the final round - using query gap penalties for right end */</span></span>
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<pre style="margin: 0;">-<span id="LC628" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC629" class="line" lang="cpp"> <span class="n" style="color: #333;">vp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qp</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC630" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC631" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC632" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC633" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC634" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epu16</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">Mm</span><span class="p">);</span></span>
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635
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<pre style="margin: 0;">-<span id="LC635" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_t_left</span><span class="p">);</span></span>
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636
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<pre style="margin: 0;">-<span id="LC636" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">M_QR_q_right</span><span class="p">);</span></span>
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637
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<pre style="margin: 0;">-<span id="LC637" class="line" lang="cpp"></span>
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638
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610
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<pre style="margin: 0;"> <span id="LC610" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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639
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<td class="diff-line-num new_line" data-linenumber="611" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
611
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<pre style="margin: 0;"> <span id="LC611" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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640
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612
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<pre style="margin: 0;"> <span id="LC612" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="643" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="615" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -643,6 +615,8 @@ void aligncolumns_first(VECTOR_SHORT * Sm,</td>
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643
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615
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<pre style="margin: 0;"> <span id="LC615" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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644
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616
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<pre style="margin: 0;"> <span id="LC616" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">12</span><span class="p">,</span></span>
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645
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<td class="diff-line-num new_line" data-linenumber="617" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
617
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<pre style="margin: 0;"> <span id="LC617" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
618
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="cpp"></span>
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646
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620
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<pre style="margin: 0;"> <span id="LC620" class="line" lang="cpp"></span>
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647
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621
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<pre style="margin: 0;"> <span id="LC621" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="648" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
648
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622
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<pre style="margin: 0;"> <span id="LC622" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="654" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -654,8 +628,6 @@ void aligncolumns_first(VECTOR_SHORT * Sm,</td>
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654
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628
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<pre style="margin: 0;"> <span id="LC628" class="line" lang="cpp"></span>
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655
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629
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<pre style="margin: 0;"> <span id="LC629" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min</span><span class="p">;</span></span>
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656
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630
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<pre style="margin: 0;"> <span id="LC630" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC657" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC658" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC631" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC632" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC633" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">aligncolumns_rest</span><span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">Sm</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -686,22 +658,22 @@ void aligncolumns_rest(VECTOR_SHORT * Sm,</td>
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<pre style="margin: 0;"> <span id="LC658" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">ql</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC659" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">dir</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC660" class="line" lang="cpp"><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC689" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">-<span id="LC690" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC661" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">HE</span><span class="p">,</span> <span class="n" style="color: #333;">HF</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC662" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">vp</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC663" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC694" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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<pre style="margin: 0;">-<span id="LC695" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC666" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;"> <span id="LC668" class="line" lang="cpp"> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">RES</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC670" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC671" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC672" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC701" class="line" lang="cpp"> <span class="n" style="color: #333;">f0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">ec_subs</span></span><span class="p">(</span><span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC702" class="line" lang="cpp"> <span class="n" style="color: #333;">f1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">ec_subs</span></span><span class="p">(</span><span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC703" class="line" lang="cpp"> <span class="n" style="color: #333;">f2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">ec_subs</span></span><span class="p">(</span><span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC704" class="line" lang="cpp"> <span class="n" style="color: #333;">f3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">ec_subs</span></span><span class="p">(</span><span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="cpp"> <span class="n" style="color: #333;">f0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_sub</span></span><span class="p">(</span><span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="cpp"> <span class="n" style="color: #333;">f1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_sub</span></span><span class="p">(</span><span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC675" class="line" lang="cpp"> <span class="n" style="color: #333;">f2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_sub</span></span><span class="p">(</span><span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC676" class="line" lang="cpp"> <span class="n" style="color: #333;">f3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_sub</span></span><span class="p">(</span><span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC677" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC678" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">ql</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC679" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -711,21 +683,29 @@ void aligncolumns_rest(VECTOR_SHORT * Sm,</td>
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<pre style="margin: 0;"> <span id="LC683" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC684" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC685" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC686" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;"> <span id="LC687" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC688" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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689
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<pre style="margin: 0;"> <span id="LC689" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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717
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690
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<pre style="margin: 0;"> <span id="LC690" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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718
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691
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<pre style="margin: 0;"> <span id="LC691" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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719
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<pre style="margin: 0;">-<span id="LC719" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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720
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<pre style="margin: 0;">-<span id="LC720" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC721" class="line" lang="cpp"></span>
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692
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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722
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693
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<pre style="margin: 0;"> <span id="LC693" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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723
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694
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<pre style="margin: 0;"> <span id="LC694" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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724
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695
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<pre style="margin: 0;"> <span id="LC695" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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725
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696
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<pre style="margin: 0;"> <span id="LC696" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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726
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697
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<pre style="margin: 0;"> <span id="LC697" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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727
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<pre style="margin: 0;">-<span id="LC727" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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728
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<pre style="margin: 0;">-<span id="LC728" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">8</span><span class="p">));</span></span>
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698
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<pre style="margin: 0;">+<span id="LC698" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">8</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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699
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<pre style="margin: 0;">+<span id="LC699" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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700
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<pre style="margin: 0;">+<span id="LC700" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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701
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<pre style="margin: 0;">+<span id="LC701" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="702" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
702
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="703" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
703
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<pre style="margin: 0;">+<span id="LC703" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="704" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
704
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<pre style="margin: 0;">+<span id="LC704" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="705" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
705
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<pre style="margin: 0;">+<span id="LC705" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="706" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
706
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<pre style="margin: 0;">+<span id="LC706" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">12</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="707" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
707
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<pre style="margin: 0;">+<span id="LC707" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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708
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<pre style="margin: 0;">+<span id="LC708" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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729
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709
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<pre style="margin: 0;"> <span id="LC709" class="line" lang="cpp"></span>
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<td class="diff-line-num old_line" data-linenumber="730" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
730
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<td class="diff-line-num new_line" data-linenumber="710" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
710
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<pre style="margin: 0;"> <span id="LC710" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="731" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
731
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711
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<pre style="margin: 0;"> <span id="LC711" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="742" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -742,81 +722,20 @@ void aligncolumns_rest(VECTOR_SHORT * Sm,</td>
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742
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722
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<pre style="margin: 0;"> <span id="LC722" class="line" lang="cpp"></span>
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<td class="diff-line-num old_line" data-linenumber="743" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
743
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<td class="diff-line-num new_line" data-linenumber="723" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
723
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<pre style="margin: 0;"> <span id="LC723" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">];</span></span>
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744
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724
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<pre style="margin: 0;"> <span id="LC724" class="line" lang="cpp"></span>
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725
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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745
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<td class="diff-line-num new_line" data-linenumber="726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
726
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<pre style="margin: 0;"> <span id="LC726" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="746" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
746
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<td class="diff-line-num new_line" data-linenumber="727" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
727
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<pre style="margin: 0;"> <span id="LC727" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="747" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
747
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<td class="diff-line-num new_line" data-linenumber="728" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
728
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<pre style="margin: 0;"> <span id="LC728" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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748
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729
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<pre style="margin: 0;"> <span id="LC729" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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749
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730
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<pre style="margin: 0;"> <span id="LC730" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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750
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<pre style="margin: 0;">-<span id="LC750" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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751
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<pre style="margin: 0;">-<span id="LC751" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">));</span></span>
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752
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<pre style="margin: 0;">-<span id="LC752" class="line" lang="cpp"></span>
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731
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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753
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<td class="diff-line-num new_line" data-linenumber="732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
732
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<pre style="margin: 0;"> <span id="LC732" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">RES1</span><span class="p">,</span></span>
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754
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733
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<pre style="margin: 0;"> <span id="LC733" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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755
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<td class="diff-line-num new_line" data-linenumber="734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
734
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<pre style="margin: 0;"> <span id="LC734" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span></span>
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756
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<td class="diff-line-num new_line" data-linenumber="735" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
735
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<pre style="margin: 0;"> <span id="LC735" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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757
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736
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<pre style="margin: 0;"> <span id="LC736" class="line" lang="cpp"> <span class="n" style="color: #333;">RES</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_perm</span><span class="p">(</span><span class="n" style="color: #333;">RES1</span><span class="p">,</span> <span class="n" style="color: #333;">RES2</span><span class="p">,</span> <span class="n" style="color: #333;">perm_merge_long_low</span><span class="p">);</span></span>
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758
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<pre style="margin: 0;">-<span id="LC758" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_st</span><span class="p">((</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span><span class="p">)</span> <span class="n" style="color: #333;">RES</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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759
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<pre style="margin: 0;">-<span id="LC759" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">8</span><span class="p">));</span></span>
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760
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<pre style="margin: 0;">-<span id="LC760" class="line" lang="cpp"></span>
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761
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<pre style="margin: 0;">-<span id="LC761" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="762" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
762
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<td class="diff-line-num new_line old" data-linenumber="737" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC762" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="763" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
763
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<td class="diff-line-num new_line old" data-linenumber="737" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC763" class="line" lang="cpp"></span>
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764
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<pre style="margin: 0;">-<span id="LC764" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h5</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="765" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
765
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<pre style="margin: 0;">-<span id="LC765" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h6</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC766" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h7</span><span class="p">;</span></span>
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767
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<pre style="margin: 0;">-<span id="LC767" class="line" lang="cpp"> <span class="n" style="color: #333;">Sm</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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768
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<pre style="margin: 0;">-<span id="LC768" class="line" lang="cpp"></span>
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769
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<pre style="margin: 0;">-<span id="LC769" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min</span><span class="p">;</span></span>
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770
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<pre style="margin: 0;">-<span id="LC770" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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771
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<pre style="margin: 0;">-<span id="LC771" class="line" lang="cpp"></span>
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737
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">((</span><span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">8</span><span class="p">),</span> <span class="n" style="color: #333;">RES</span><span class="p">);</span></span>
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772
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738
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<pre style="margin: 0;"> <span id="LC738" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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773
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<pre style="margin: 0;">-<span id="LC773" class="line" lang="cpp"></span>
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774
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<pre style="margin: 0;">-<span id="LC774" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h4</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">HE</span><span class="p">,</span> <span class="n" style="color: #333;">HF</span><span class="p">;</span></span>
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775
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<pre style="margin: 0;">-<span id="LC775" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">vp</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC776" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC777" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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778
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<pre style="margin: 0;">-<span id="LC778" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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779
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<pre style="margin: 0;">-<span id="LC779" class="line" lang="cpp"></span>
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780
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<pre style="margin: 0;">-<span id="LC780" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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781
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<pre style="margin: 0;">-<span id="LC781" class="line" lang="cpp"></span>
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782
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<pre style="margin: 0;">-<span id="LC782" class="line" lang="cpp"> <span class="n" style="color: #333;">f0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">);</span></span>
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783
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<pre style="margin: 0;">-<span id="LC783" class="line" lang="cpp"> <span class="n" style="color: #333;">f1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">);</span></span>
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784
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<pre style="margin: 0;">-<span id="LC784" class="line" lang="cpp"> <span class="n" style="color: #333;">f2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">);</span></span>
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785
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<pre style="margin: 0;">-<span id="LC785" class="line" lang="cpp"> <span class="n" style="color: #333;">f3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">);</span></span>
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786
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<pre style="margin: 0;">-<span id="LC786" class="line" lang="cpp"></span>
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787
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<pre style="margin: 0;">-<span id="LC787" class="line" lang="cpp"></span>
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788
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<pre style="margin: 0;">-<span id="LC788" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">ql</span> <span class="o" style="font-weight: 600;">-</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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789
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<pre style="margin: 0;">-<span id="LC789" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC790" class="line" lang="cpp"> <span class="n" style="color: #333;">vp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qp</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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791
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<pre style="margin: 0;">-<span id="LC791" class="line" lang="cpp"></span>
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792
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<pre style="margin: 0;">-<span id="LC792" class="line" lang="cpp"> <span class="n" style="color: #333;">h4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="793" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
793
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<pre style="margin: 0;">-<span id="LC793" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="794" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
794
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<pre style="margin: 0;">-<span id="LC794" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">];</span></span>
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795
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<pre style="margin: 0;">-<span id="LC795" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="796" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
796
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<pre style="margin: 0;">-<span id="LC796" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="797" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
797
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<pre style="margin: 0;">-<span id="LC797" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="798" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
798
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<pre style="margin: 0;">-<span id="LC798" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="799" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
799
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<td class="diff-line-num new_line old" data-linenumber="739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC799" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_1</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="800" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
800
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<pre style="margin: 0;">-<span id="LC800" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h2</span><span class="p">,</span> <span class="n" style="color: #333;">h7</span><span class="p">,</span> <span class="n" style="color: #333;">f2</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">8</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="801" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
801
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<td class="diff-line-num new_line old" data-linenumber="739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC801" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="802" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
802
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<td class="diff-line-num new_line old" data-linenumber="739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC802" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">12</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="803" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
803
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<pre style="margin: 0;">-<span id="LC803" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_i</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC804" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC805" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC806" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC807" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC808" class="line" lang="cpp"> <span class="n" style="color: #333;">h0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h4</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC809" class="line" lang="cpp"> <span class="n" style="color: #333;">h1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h5</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC810" class="line" lang="cpp"> <span class="n" style="color: #333;">h2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h6</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC811" class="line" lang="cpp"> <span class="n" style="color: #333;">h3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h7</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC812" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC813" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC814" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* the final round - using query gap penalties for right end */</span></span>
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<pre style="margin: 0;">-<span id="LC815" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC816" class="line" lang="cpp"> <span class="n" style="color: #333;">vp</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">qp</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC817" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC818" class="line" lang="cpp"> <span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC819" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC739" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h0</span><span class="p">,</span> <span class="n" style="color: #333;">h5</span><span class="p">,</span> <span class="n" style="color: #333;">f0</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>
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740
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<pre style="margin: 0;"> <span id="LC740" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_0</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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741
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<pre style="margin: 0;"> <span id="LC741" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h1</span><span class="p">,</span> <span class="n" style="color: #333;">h6</span><span class="p">,</span> <span class="n" style="color: #333;">f1</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">4</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="825" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="744" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -825,6 +744,7 @@ void aligncolumns_rest(VECTOR_SHORT * Sm,</td>
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744
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<pre style="margin: 0;"> <span id="LC744" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_2</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="826" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
826
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<td class="diff-line-num new_line" data-linenumber="745" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
745
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<pre style="margin: 0;"> <span id="LC745" class="line" lang="cpp"> <span class="n" style="color: #333;">ALIGNCORE</span><span class="p">(</span><span class="n" style="color: #333;">h3</span><span class="p">,</span> <span class="n" style="color: #333;">h8</span><span class="p">,</span> <span class="n" style="color: #333;">f3</span><span class="p">,</span> <span class="n" style="color: #333;">vp</span><span class="p">[</span><span class="mi" style="color: #099;">3</span><span class="p">],</span> <span class="n" style="color: #333;">dir</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">12</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="827" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
827
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<td class="diff-line-num new_line" data-linenumber="746" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
746
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<pre style="margin: 0;"> <span id="LC746" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">R_q_r</span><span class="p">,</span> <span class="n" style="color: #333;">QR_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">R_t_3</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="747" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
747
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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828
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<td class="diff-line-num new_line" data-linenumber="748" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
748
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<pre style="margin: 0;"> <span id="LC748" class="line" lang="cpp"></span>
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<td class="diff-line-num old_line" data-linenumber="829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
829
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<td class="diff-line-num new_line" data-linenumber="749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
749
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<pre style="margin: 0;"> <span id="LC749" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h8</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="830" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
830
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<td class="diff-line-num new_line" data-linenumber="750" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
750
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<pre style="margin: 0;"> <span id="LC750" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">E</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="836" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="756" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -836,8 +756,6 @@ void aligncolumns_rest(VECTOR_SHORT * Sm,</td>
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836
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756
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<pre style="margin: 0;"> <span id="LC756" class="line" lang="cpp"></span>
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<td class="diff-line-num old_line" data-linenumber="837" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
837
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757
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<pre style="margin: 0;"> <span id="LC757" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min</span><span class="p">;</span></span>
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838
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758
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<pre style="margin: 0;"> <span id="LC758" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">_h_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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839
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<pre style="margin: 0;">-<span id="LC839" class="line" lang="cpp"></span>
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840
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<pre style="margin: 0;">-<span id="LC840" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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841
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759
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<pre style="margin: 0;"> <span id="LC759" class="line" lang="cpp"><span class="p">}</span></span>
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842
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760
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<pre style="margin: 0;"> <span id="LC760" class="line" lang="cpp"></span>
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843
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761
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<pre style="margin: 0;"> <span id="LC761" class="line" lang="cpp"><span class="kr" style="font-weight: 600;">inline</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">pushop</span><span class="p">(</span><span class="n" style="color: #333;">s16info_s</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">s</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">newop</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="852" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="770" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -852,7 +770,7 @@ inline void pushop(s16info_s * s, char newop)</td>
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852
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770
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<pre style="margin: 0;"> <span id="LC770" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">buf</span><span class="p">[</span><span class="mi" style="color: #099;">11</span><span class="p">];</span></span>
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853
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771
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<pre style="margin: 0;"> <span id="LC771" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">buf</span><span class="p">,</span> <span class="s" style="color: #d14;">"%d"</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">opcount</span><span class="p">);</span></span>
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854
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772
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<pre style="margin: 0;"> <span id="LC772" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigarend</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">len</span><span class="p">;</span></span>
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855
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<pre style="margin: 0;">-<span id="LC855" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">strn</span>cpy</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigarend</span><span class="p">,</span> <span class="n" style="color: #333;">buf</span><span class="p">,</span> <span class="n" style="color: #333;">len</span><span class="p">);</span></span>
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773
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<pre style="margin: 0;">+<span id="LC773" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">mem</span>cpy</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigarend</span><span class="p">,</span> <span class="n" style="color: #333;">buf</span><span class="p">,</span> <span class="n" style="color: #333;">len</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC774" class="line" lang="cpp"> <span class="p">}</span></span>
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857
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775
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<pre style="margin: 0;"> <span id="LC775" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">op</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">newop</span><span class="p">;</span></span>
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776
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<pre style="margin: 0;"> <span id="LC776" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">opcount</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="869" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="787" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -869,7 +787,7 @@ inline void finishop(s16info_s * s)</td>
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869
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787
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<pre style="margin: 0;"> <span id="LC787" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="n" style="color: #333;">buf</span><span class="p">[</span><span class="mi" style="color: #099;">11</span><span class="p">];</span></span>
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788
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<pre style="margin: 0;"> <span id="LC788" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sprintf</span><span class="p">(</span><span class="n" style="color: #333;">buf</span><span class="p">,</span> <span class="s" style="color: #d14;">"%d"</span><span class="p">,</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">opcount</span><span class="p">);</span></span>
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871
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789
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<pre style="margin: 0;"> <span id="LC789" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigarend</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">len</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC872" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">strn</span>cpy</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigarend</span><span class="p">,</span> <span class="n" style="color: #333;">buf</span><span class="p">,</span> <span class="n" style="color: #333;">len</span><span class="p">);</span></span>
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790
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<pre style="margin: 0;">+<span id="LC790" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">mem</span>cpy</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigarend</span><span class="p">,</span> <span class="n" style="color: #333;">buf</span><span class="p">,</span> <span class="n" style="color: #333;">len</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC791" class="line" lang="cpp"> <span class="p">}</span></span>
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792
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<pre style="margin: 0;"> <span id="LC792" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">op</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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793
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<pre style="margin: 0;"> <span id="LC793" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">opcount</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="905" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -905,8 +823,8 @@ void backtrack16(s16info_s * s,</td>
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905
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823
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<pre style="margin: 0;"> <span id="LC823" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> for(uint64_t j=0; j<dlen; j++)</span></span>
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824
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<pre style="margin: 0;"> <span id="LC824" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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825
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<pre style="margin: 0;"> <span id="LC825" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> uint64_t d = *((uint64_t *) (dirbuffer +</span></span>
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<pre style="margin: 0;">-<span id="LC908" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> <span class="idiff left right"> </span>(offset + 16*s->qlen*(j/4) +</span></span>
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<pre style="margin: 0;">-<span id="LC909" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> <span class="idiff left right"> </span>16*i + 4*(j&3)) % dirbuffersize));</span></span>
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<pre style="margin: 0;">+<span id="LC826" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> (offset + 16*s->qlen*(j/4) +</span></span>
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<pre style="margin: 0;">+<span id="LC827" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> 16*i + 4*(j&3)) % dirbuffersize));</span></span>
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<pre style="margin: 0;"> <span id="LC828" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> if (d & maskup)</span></span>
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911
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829
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<pre style="margin: 0;"> <span id="LC829" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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830
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<pre style="margin: 0;"> <span id="LC830" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> if (d & maskleft)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -933,8 +851,8 @@ void backtrack16(s16info_s * s,</td>
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851
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<pre style="margin: 0;"> <span id="LC851" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> for(uint64_t j=0; j<dlen; j++)</span></span>
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852
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<pre style="margin: 0;"> <span id="LC852" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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853
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<pre style="margin: 0;"> <span id="LC853" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> uint64_t d = *((uint64_t *) (dirbuffer +</span></span>
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<pre style="margin: 0;">-<span id="LC936" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> <span class="idiff left right"> </span>(offset + 16*s->qlen*(j/4) +</span></span>
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<pre style="margin: 0;">-<span id="LC937" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> <span class="idiff left right"> </span>16*i + 4*(j&3)) % dirbuffersize));</span></span>
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<pre style="margin: 0;">+<span id="LC854" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> (offset + 16*s->qlen*(j/4) +</span></span>
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<pre style="margin: 0;">+<span id="LC855" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> 16*i + 4*(j&3)) % dirbuffersize));</span></span>
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<pre style="margin: 0;"> <span id="LC856" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> if (d & maskextup)</span></span>
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857
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<pre style="margin: 0;"> <span id="LC857" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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<pre style="margin: 0;"> <span id="LC858" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> if (d & maskextleft)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="973" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -973,8 +891,8 @@ void backtrack16(s16info_s * s,</td>
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891
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<pre style="margin: 0;"> <span id="LC891" class="line" lang="cpp"> <span class="n" style="color: #333;">aligned</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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892
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<pre style="margin: 0;"> <span id="LC892" class="line" lang="cpp"></span>
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893
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<pre style="margin: 0;"> <span id="LC893" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">d</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="p">(</span><span class="n" style="color: #333;">dirbuffer</span> <span class="o" style="font-weight: 600;">+</span></span>
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976
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<pre style="margin: 0;">-<span id="LC976" class="line" lang="cpp"> <span class="idiff left right"> </span><span class="p">(</span><span class="n" style="color: #333;">offset</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">qlen</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">4</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span></span>
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<pre style="margin: 0;">-<span id="LC977" class="line" lang="cpp"> <span class="idiff left right"> </span><span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">4</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">&</span><span class="mi" style="color: #099;">3</span><span class="p">))</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">dirbuffersize</span><span class="p">));</span></span>
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<pre style="margin: 0;">+<span id="LC894" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">offset</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">qlen</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">/</span><span class="mi" style="color: #099;">4</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span></span>
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895
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<pre style="margin: 0;">+<span id="LC895" class="line" lang="cpp"> <span class="mi" style="color: #099;">16</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">4</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">&</span><span class="mi" style="color: #099;">3</span><span class="p">))</span> <span class="o" style="font-weight: 600;">%</span> <span class="n" style="color: #333;">dirbuffersize</span><span class="p">));</span></span>
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896
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<pre style="margin: 0;"> <span id="LC896" class="line" lang="cpp"></span>
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979
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897
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<pre style="margin: 0;"> <span id="LC897" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">op</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'I'</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span> <span class="p">(</span><span class="n" style="color: #333;">d</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">maskextleft</span><span class="p">))</span></span>
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980
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898
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<pre style="margin: 0;"> <span id="LC898" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1240,7 +1158,7 @@ void search16(s16info_s * s,</td>
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1240
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1158
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<pre style="margin: 0;"> <span id="LC1158" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigar</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">xmalloc</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">cigaralloc</span><span class="p">);</span></span>
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1241
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1159
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<pre style="margin: 0;"> <span id="LC1159" class="line" lang="cpp"> <span class="p">}</span></span>
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1242
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1160
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<pre style="margin: 0;"> <span id="LC1160" class="line" lang="cpp"></span>
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1243
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<pre style="margin: 0;">-<span id="LC1243" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;"><span class="idiff left">T</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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1161
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<pre style="margin: 0;">+<span id="LC1161" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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1244
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1162
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<pre style="margin: 0;"> <span id="LC1162" class="line" lang="cpp"></span>
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1245
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1163
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<pre style="margin: 0;"> <span id="LC1163" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M_QR_target_left</span><span class="p">,</span> <span class="n" style="color: #333;">M_R_target_left</span><span class="p">;</span></span>
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1246
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1164
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<pre style="margin: 0;"> <span id="LC1164" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M_QR_query_interior</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1273,58 +1191,29 @@ void search16(s16info_s * s,</td>
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1273
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1191
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<pre style="margin: 0;"> <span id="LC1191" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">next_id</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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1274
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1192
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<pre style="margin: 0;"> <span id="LC1192" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">done</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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1275
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1193
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<pre style="margin: 0;"> <span id="LC1193" class="line" lang="cpp"></span>
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1194
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<pre style="margin: 0;">+<span id="LC1194" class="line" lang="cpp"> <span class="n" style="color: #333;">T0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_init</span><span class="p">(</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1276
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1195
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<pre style="margin: 0;"> <span id="LC1195" class="line" lang="cpp"></span>
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1277
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<pre style="margin: 0;">-<span id="LC1277" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1278
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<pre style="margin: 0;">-<span id="LC1278" class="line" lang="cpp"></span>
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1279
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<pre style="margin: 0;">-<span id="LC1279" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vector</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">T0_init</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span> <span class="p">};</span></span>
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1280
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<pre style="margin: 0;">-<span id="LC1280" class="line" lang="cpp"> <span class="n" style="color: #333;">T0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0_init</span><span class="p">;</span></span>
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1281
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<pre style="margin: 0;">-<span id="LC1281" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1282
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1282" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_left</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1283
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<pre style="margin: 0;">-<span id="LC1283" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1284
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1284" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){(</span><span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_query_interior</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_interior</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1285
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1285" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_interior</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1286
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1286" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1287
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1287" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){(</span><span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_query_right</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_right</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1288
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1288" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_right</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1289
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<pre style="margin: 0;">-<span id="LC1289" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1290
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1290" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){(</span><span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_left</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_left</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1291
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1291" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_left</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1292
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1292" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1293
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1293" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){(</span><span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_interior</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_interior</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1294
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1294" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_interior</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1295
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<pre style="margin: 0;">-<span id="LC1295" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1296
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<pre style="margin: 0;">-<span id="LC1296" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){(</span><span class="kt" style="color: #458; font-weight: 600;">short</span><span class="p">)(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_right</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_right</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1297
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1297" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="p">){</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_right</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">},</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1298
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<pre style="margin: 0;">-<span id="LC1298" class="line" lang="cpp"></span>
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1299
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<pre style="margin: 0;">-<span id="LC1299" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1300
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1300" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1301
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<pre style="margin: 0;">-<span id="LC1301" class="line" lang="cpp"> <span class="n" style="color: #333;">T0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set_epi16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mh" style="color: #099;">0xffff</span><span class="p">);</span></span>
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1302
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<pre style="margin: 0;">-<span id="LC1302" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1303
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<td class="diff-line-num new_line old" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1303" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set1_epi16</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_left</span><span class="p">);</span></span>
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1196
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<pre style="margin: 0;">+<span id="LC1196" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_dup</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_left</span><span class="p">);</span></span>
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1304
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1197
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<pre style="margin: 0;"> <span id="LC1197" class="line" lang="cpp"></span>
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1305
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<pre style="margin: 0;">-<span id="LC1305" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_set1_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_query_interior</span> <span class="o" style="font-weight: 600;">+</span></span>
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1306
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<pre style="margin: 0;">-<span id="LC1306" class="line" lang="cpp"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">s</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff right">penalty_gap_extension_query_interior</span></span><span class="p">);</span></span>
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1307
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<td class="diff-line-num new_line old" data-linenumber="1198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1307" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_set1_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_interior</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1198
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<pre style="margin: 0;">+<span id="LC1198" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">v_dup</span></span><span class="p"><span class="idiff right">(</span>(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_query_interior</span> <span class="o" style="font-weight: 600;">+</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1199
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<pre style="margin: 0;">+<span id="LC1199" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">s</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff">penalty_gap_extension_query_interior</span></span><span class="p"><span class="idiff right">)</span>);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1200
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<pre style="margin: 0;">+<span id="LC1200" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_dup</span></span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_interior</span><span class="p">);</span></span>
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1308
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<td class="diff-line-num new_line" data-linenumber="1201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1201
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<pre style="margin: 0;"> <span id="LC1201" class="line" lang="cpp"></span>
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1309
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<td class="diff-line-num new_line old" data-linenumber="1202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1309" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_set1_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_query_right</span> <span class="o" style="font-weight: 600;">+</span></span>
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1310
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<pre style="margin: 0;">-<span id="LC1310" class="line" lang="cpp"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">s</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff right">penalty_gap_extension_query_right</span></span><span class="p">);</span></span>
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1311
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<pre style="margin: 0;">-<span id="LC1311" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_set1_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_right</span><span class="p">);</span></span>
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1202
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<pre style="margin: 0;">+<span id="LC1202" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">v_dup</span></span><span class="p"><span class="idiff right">(</span>(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_query_right</span> <span class="o" style="font-weight: 600;">+</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1203
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<pre style="margin: 0;">+<span id="LC1203" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">s</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff">penalty_gap_extension_query_right</span></span><span class="p"><span class="idiff right">)</span>);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1204
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<pre style="margin: 0;">+<span id="LC1204" class="line" lang="cpp"> <span class="n" style="color: #333;">R_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_dup</span></span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_query_right</span><span class="p">);</span></span>
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1312
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1205
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<pre style="margin: 0;"> <span id="LC1205" class="line" lang="cpp"></span>
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1313
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<pre style="margin: 0;">-<span id="LC1313" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set1_epi16</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_left</span> <span class="o" style="font-weight: 600;">+</span></span>
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1314
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<pre style="margin: 0;">-<span id="LC1314" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_left</span><span class="p">);</span></span>
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1315
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<pre style="margin: 0;">-<span id="LC1315" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set1_epi16</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_left</span><span class="p">);</span></span>
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1316
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<pre style="margin: 0;">-<span id="LC1316" class="line" lang="cpp"></span>
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1317
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<pre style="margin: 0;">-<span id="LC1317" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set1_epi16</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_interior</span> <span class="o" style="font-weight: 600;">+</span></span>
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1318
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<pre style="margin: 0;">-<span id="LC1318" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_interior</span><span class="p">);</span></span>
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1319
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<pre style="margin: 0;">-<span id="LC1319" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set1_epi16</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_interior</span><span class="p">);</span></span>
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1320
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<pre style="margin: 0;">-<span id="LC1320" class="line" lang="cpp"></span>
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1321
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<pre style="margin: 0;">-<span id="LC1321" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set1_epi16</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_right</span> <span class="o" style="font-weight: 600;">+</span></span>
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1322
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<pre style="margin: 0;">-<span id="LC1322" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_right</span><span class="p">);</span></span>
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1323
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<pre style="margin: 0;">-<span id="LC1323" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_set1_epi16</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_right</span><span class="p">);</span></span>
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1324
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<pre style="margin: 0;">-<span id="LC1324" class="line" lang="cpp"></span>
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1325
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<pre style="margin: 0;">-<span id="LC1325" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1206
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<pre style="margin: 0;">+<span id="LC1206" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_dup</span><span class="p">((</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_left</span> <span class="o" style="font-weight: 600;">+</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1207" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_left</span><span class="p">));</span></span>
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1208
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<pre style="margin: 0;">+<span id="LC1208" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_dup</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_left</span><span class="p">);</span></span>
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1326
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1209
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<pre style="margin: 0;"> <span id="LC1209" class="line" lang="cpp"></span>
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1210
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<pre style="margin: 0;">+<span id="LC1210" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_dup</span><span class="p">((</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_interior</span> <span class="o" style="font-weight: 600;">+</span></span>
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1211
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<pre style="margin: 0;">+<span id="LC1211" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_interior</span><span class="p">));</span></span>
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1212
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<pre style="margin: 0;">+<span id="LC1212" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_dup</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_interior</span><span class="p">);</span></span>
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1327
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1213
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<pre style="margin: 0;"> <span id="LC1213" class="line" lang="cpp"></span>
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1214
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<pre style="margin: 0;">+<span id="LC1214" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_dup</span><span class="p">((</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_open_target_right</span> <span class="o" style="font-weight: 600;">+</span></span>
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1215
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<pre style="margin: 0;">+<span id="LC1215" class="line" lang="cpp"> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_right</span><span class="p">));</span></span>
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1216
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<pre style="margin: 0;">+<span id="LC1216" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_dup</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">penalty_gap_extension_target_right</span><span class="p">);</span></span>
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1328
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1217
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<pre style="margin: 0;"> <span id="LC1217" class="line" lang="cpp"></span>
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1329
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1218
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<pre style="margin: 0;"> <span id="LC1218" class="line" lang="cpp"> <span class="n" style="color: #333;">hep</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">hearray</span><span class="p">;</span></span>
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1330
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1219
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<pre style="margin: 0;"> <span id="LC1219" class="line" lang="cpp"> <span class="n" style="color: #333;">qp</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">**</span><span class="p">)</span> <span class="n" style="color: #333;">q_start</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1364" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1364,47 +1253,26 @@ void search16(s16info_s * s,</td>
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1364
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1253
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<pre style="margin: 0;"> <span id="LC1253" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">score_min</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">SHRT_MIN</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">gap_penalty_max</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="1365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1365
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1254
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<pre style="margin: 0;"> <span id="LC1254" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">score_max</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">SHRT_MAX</span><span class="p">;</span></span>
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1366
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1255
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<pre style="margin: 0;"> <span id="LC1255" class="line" lang="cpp"></span>
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1367
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<pre style="margin: 0;">-<span id="LC1367" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1368
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<pre style="margin: 0;">-<span id="LC1368" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">VZERO</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1369
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<pre style="margin: 0;">-<span id="LC1369" class="line" lang="cpp"></span>
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1370
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1256
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<pre style="margin: 0;"> <span id="LC1256" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;"><</span><span class="mi" style="color: #099;">4</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC1257" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1372" class="line" lang="cpp"> <span class="n" style="color: #333;">S</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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1373
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<pre style="margin: 0;">-<span id="LC1373" class="line" lang="cpp"> <span class="n" style="color: #333;">dseqalloc</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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1258
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<pre style="margin: 0;">+<span id="LC1258" class="line" lang="cpp"> <span class="n" style="color: #333;">S</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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1259
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<pre style="margin: 0;">+<span id="LC1259" class="line" lang="cpp"> <span class="n" style="color: #333;">dseqalloc</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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1374
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1260
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<pre style="margin: 0;"> <span id="LC1260" class="line" lang="cpp"> <span class="p">}</span></span>
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1375
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1261
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<pre style="margin: 0;"> <span id="LC1261" class="line" lang="cpp"></span>
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1376
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<pre style="margin: 0;">-<span id="LC1376" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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1377
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<pre style="margin: 0;">-<span id="LC1377" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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1378
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<pre style="margin: 0;">-<span id="LC1378" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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1379
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<pre style="margin: 0;">-<span id="LC1379" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left">ec_splat_s16</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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1262
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<pre style="margin: 0;">+<span id="LC1262" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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1263
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<pre style="margin: 0;">+<span id="LC1263" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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1264
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<pre style="margin: 0;">+<span id="LC1264" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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1265
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<pre style="margin: 0;">+<span id="LC1265" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v<span class="idiff left right">_zero</span></span><span class="p">;</span></span>
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1380
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1266
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<pre style="margin: 0;"> <span id="LC1266" class="line" lang="cpp"></span>
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1381
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<pre style="margin: 0;">-<span id="LC1381" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1382
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<pre style="margin: 0;">-<span id="LC1382" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1383
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<pre style="margin: 0;">-<span id="LC1383" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1384
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<pre style="margin: 0;">-<span id="LC1384" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1385
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<pre style="margin: 0;">-<span id="LC1385" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1386
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<pre style="margin: 0;">-<span id="LC1386" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;"><</span><span class="mi" style="color: #099;">4</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1387
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<pre style="margin: 0;">-<span id="LC1387" class="line" lang="cpp"> <span class="p">{</span></span>
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1388
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<pre style="margin: 0;">-<span id="LC1388" class="line" lang="cpp"> <span class="n" style="color: #333;">S</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1389
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<pre style="margin: 0;">-<span id="LC1389" class="line" lang="cpp"> <span class="n" style="color: #333;">dseqalloc</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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1390
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<pre style="margin: 0;">-<span id="LC1390" class="line" lang="cpp"> <span class="p">}</span></span>
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1391
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<pre style="margin: 0;">-<span id="LC1391" class="line" lang="cpp"></span>
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1392
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<pre style="margin: 0;">-<span id="LC1392" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1393
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<pre style="margin: 0;">-<span id="LC1393" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1394
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<td class="diff-line-num new_line old" data-linenumber="1267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1394" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1395
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<pre style="margin: 0;">-<span id="LC1395" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">H3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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1396
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<pre style="margin: 0;">-<span id="LC1396" class="line" lang="cpp"></span>
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1397
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<pre style="margin: 0;">-<span id="LC1397" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1398
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<pre style="margin: 0;">-<span id="LC1398" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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1399
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<pre style="margin: 0;">-<span id="LC1399" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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1400
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<pre style="margin: 0;">-<span id="LC1400" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1401
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<pre style="margin: 0;">-<span id="LC1401" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1267
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<pre style="margin: 0;">+<span id="LC1267" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_zero</span><span class="p">;</span></span>
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1268
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<pre style="margin: 0;">+<span id="LC1268" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_zero</span><span class="p">;</span></span>
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1269
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<pre style="margin: 0;">+<span id="LC1269" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_zero</span><span class="p">;</span></span>
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1270
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<pre style="margin: 0;">+<span id="LC1270" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">F3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_zero</span><span class="p">;</span></span>
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1402
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<pre style="margin: 0;"> <span id="LC1271" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC1272" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">easy</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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1273
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<pre style="margin: 0;"> <span id="LC1273" class="line" lang="cpp"></span>
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1405
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1274
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<pre style="margin: 0;"> <span id="LC1274" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dirbuffer</span><span class="p">;</span></span>
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1275
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<pre style="margin: 0;"> <span id="LC1275" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1407" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC1276" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">)</span></span>
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1277
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<pre style="margin: 0;"> <span id="LC1277" class="line" lang="cpp"> <span class="p">{</span></span>
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1278
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<pre style="margin: 0;"> <span id="LC1278" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">easy</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1441,53 +1309,28 @@ void search16(s16info_s * s,</td>
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1309
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<pre style="margin: 0;"> <span id="LC1309" class="line" lang="cpp"> <span class="p">{</span></span>
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1310
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<pre style="margin: 0;"> <span id="LC1310" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* one or more sequences ended */</span></span>
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1311
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<pre style="margin: 0;"> <span id="LC1311" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1444" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">-<span id="LC1445" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">QR_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_right</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC1446" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1447" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">R_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">R_target_right</span><span class="p">,</span></span>
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1448
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<pre style="margin: 0;">-<span id="LC1448" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1449" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CDEPTH</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC1450" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1451" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1452" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC1453" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CHANNELS</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1454
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<pre style="margin: 0;">-<span id="LC1454" class="line" lang="cpp"> <span class="p">{</span></span>
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1455
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1455" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">d_begin</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">d_end</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">])</span> <span class="o" style="font-weight: 600;">&&</span></span>
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1456
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1456" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">>=</span> <span class="p">((</span><span class="n" style="color: #333;">d_length</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">4</span><span class="p">)))</span></span>
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1457
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<pre style="margin: 0;">-<span id="LC1457" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1458" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1458
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1458" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_xor</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1459
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1459" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1460" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1460
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1460" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_sld</span><span class="p">(</span><span class="n" style="color: #333;">T</span><span class="p">,</span> <span class="n" style="color: #333;">VZERO</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">);</span></span>
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1461
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<pre style="margin: 0;">-<span id="LC1461" class="line" lang="cpp"> <span class="p">}</span></span>
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1462
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1462" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_adds</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_interior</span><span class="p">,</span></span>
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1463
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1463" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">QR_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1464
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<pre style="margin: 0;">-<span id="LC1464" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_adds</span><span class="p">(</span><span class="n" style="color: #333;">R_target_interior</span><span class="p">,</span></span>
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1465
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1465" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">R_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1466
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<pre style="margin: 0;">-<span id="LC1466" class="line" lang="cpp"> <span class="p">}</span></span>
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1467
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1467" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1468
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1468" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">QR_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_right</span><span class="p">,</span></span>
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1469
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1469" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span><span class="p">);</span></span>
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1470
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1470" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">R_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">R_target_right</span><span class="p">,</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1471" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1471
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<td class="diff-line-num new_line old" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1471" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span><span class="p">);</span></span>
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1312
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<pre style="margin: 0;">+<span id="LC1312" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">QR_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_right</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1313
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<pre style="margin: 0;">+<span id="LC1313" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1314
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<pre style="margin: 0;">+<span id="LC1314" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">R_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">R_target_right</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1315
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<pre style="margin: 0;">+<span id="LC1315" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span><span class="p">);</span></span>
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1472
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<td class="diff-line-num new_line" data-linenumber="1316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1316
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<pre style="margin: 0;"> <span id="LC1316" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CDEPTH</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="1473" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1473
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<td class="diff-line-num new_line" data-linenumber="1317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1317
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<pre style="margin: 0;"> <span id="LC1317" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1474
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<td class="diff-line-num new_line old" data-linenumber="1318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1474" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">_mm_setzero_si128</span></span><span class="p"><span class="idiff right">()</span>;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1475
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<td class="diff-line-num new_line old" data-linenumber="1318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1475" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1318
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<pre style="margin: 0;">+<span id="LC1318" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_zero</span></span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1319
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<pre style="margin: 0;">+<span id="LC1319" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">T<span class="idiff left right">T</span></span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="1476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1476
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<td class="diff-line-num new_line" data-linenumber="1320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1320
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<pre style="margin: 0;"> <span id="LC1320" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CHANNELS</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="1477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1477
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<td class="diff-line-num new_line" data-linenumber="1321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1321
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<pre style="margin: 0;"> <span id="LC1321" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="1478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1478
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<td class="diff-line-num new_line" data-linenumber="1322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1322
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<pre style="margin: 0;"> <span id="LC1322" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">d_begin</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">d_end</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">])</span> <span class="o" style="font-weight: 600;">&&</span></span>
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<td class="diff-line-num old_line" data-linenumber="1479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1479
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<td class="diff-line-num new_line" data-linenumber="1323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1323
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<pre style="margin: 0;"> <span id="LC1323" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">>=</span> <span class="p">((</span><span class="n" style="color: #333;">d_length</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">4</span><span class="p">)))</span></span>
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<td class="diff-line-num old_line" data-linenumber="1480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1480
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<td class="diff-line-num new_line" data-linenumber="1324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1324
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<pre style="margin: 0;"> <span id="LC1324" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1481
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<td class="diff-line-num new_line old" data-linenumber="1325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1481" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">_mm_xor_si128</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">M</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1325
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<pre style="margin: 0;">+<span id="LC1325" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">v_xor</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">M</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">T</span>T</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="1482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1482
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<td class="diff-line-num new_line" data-linenumber="1326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1326
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<pre style="margin: 0;"> <span id="LC1326" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1483" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1483
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<td class="diff-line-num new_line old" data-linenumber="1327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1483" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_mm_slli_si128</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">T</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">2</span></span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1327
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<pre style="margin: 0;">+<span id="LC1327" class="line" lang="cpp"> <span class="n" style="color: #333;">T<span class="idiff left">T</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">v_shift_left</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">TT</span></span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="1484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1484
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<td class="diff-line-num new_line" data-linenumber="1328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1328
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<pre style="margin: 0;"> <span id="LC1328" class="line" lang="cpp"> <span class="p">}</span></span>
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1485
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<td class="diff-line-num new_line old" data-linenumber="1329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1485" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_adds_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_target_interior</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC1486" class="line" lang="cpp"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff right">_mm_and_si128</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1487
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<pre style="margin: 0;">-<span id="LC1487" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_adds_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">R_target_interior</span><span class="p">,</span></span>
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1488
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<pre style="margin: 0;">-<span id="LC1488" class="line" lang="cpp"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff right">_mm_and_si128</span></span><span class="p">(</span><span class="n" style="color: #333;">R_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1329
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<pre style="margin: 0;">+<span id="LC1329" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_add</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_target_interior</span><span class="p">,</span></span>
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1330
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<pre style="margin: 0;">+<span id="LC1330" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">v_and</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1331
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<pre style="margin: 0;">+<span id="LC1331" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_add</span></span><span class="p">(</span><span class="n" style="color: #333;">R_target_interior</span><span class="p">,</span></span>
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1332
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<pre style="margin: 0;">+<span id="LC1332" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">v_and</span></span><span class="p">(</span><span class="n" style="color: #333;">R_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1333
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<pre style="margin: 0;"> <span id="LC1333" class="line" lang="cpp"> <span class="p">}</span></span>
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1490
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<pre style="margin: 0;">-<span id="LC1490" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1491
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1334
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<pre style="margin: 0;"> <span id="LC1334" class="line" lang="cpp"> <span class="p">}</span></span>
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1492
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1335
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<pre style="margin: 0;"> <span id="LC1335" class="line" lang="cpp"></span>
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1493
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1336
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<pre style="margin: 0;"> <span id="LC1336" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1504" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1504,22 +1347,18 @@ void search16(s16info_s * s,</td>
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1504
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1347
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<pre style="margin: 0;"> <span id="LC1347" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_max</span><span class="p">,</span></span>
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1505
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1348
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<pre style="margin: 0;"> <span id="LC1348" class="line" lang="cpp"> <span class="n" style="color: #333;">qlen</span><span class="p">,</span> <span class="n" style="color: #333;">dir</span><span class="p">);</span></span>
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1506
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1349
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<pre style="margin: 0;"> <span id="LC1349" class="line" lang="cpp"></span>
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1350
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<pre style="margin: 0;">+<span id="LC1350" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min_vector</span><span class="p">;</span></span>
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1351
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<pre style="margin: 0;">+<span id="LC1351" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max_vector</span><span class="p">;</span></span>
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1352
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<pre style="margin: 0;">+<span id="LC1352" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_min_vector</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">);</span></span>
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1353
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<pre style="margin: 0;">+<span id="LC1353" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_max_vector</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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1507
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1354
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<pre style="margin: 0;"> <span id="LC1354" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CHANNELS</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1508
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1355
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<pre style="margin: 0;"> <span id="LC1355" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="1509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1509
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<td class="diff-line-num new_line" data-linenumber="1356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1356
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<pre style="margin: 0;"> <span id="LC1356" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">overflow</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">])</span></span>
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<td class="diff-line-num old_line" data-linenumber="1510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1510
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<td class="diff-line-num new_line" data-linenumber="1357" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1357
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<pre style="margin: 0;"> <span id="LC1357" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1511
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1511" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_min_array</span><span class="p">[</span><span class="mi" style="color: #099;">8</span><span class="p">];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1512
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1512" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_max_array</span><span class="p">[</span><span class="mi" style="color: #099;">8</span><span class="p">];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1513
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1513" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1514
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1514" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_min_array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1515
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1515" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_max_array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1516
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1516" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1517
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1517" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_storeu_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_min_array</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1518
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1518" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_storeu_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_max_array</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1519
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1519" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1520
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1520" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_min_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min_array</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1521
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1521" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_max_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max_array</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1522
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<td class="diff-line-num new_line old" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1522" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">h_min_c</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">score_min</span><span class="p">)</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">h_max_c</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">score_max</span><span class="p">))</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1358
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<pre style="margin: 0;">+<span id="LC1358" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_min_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_min_vector</span><span class="p">))[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1359
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<pre style="margin: 0;">+<span id="LC1359" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_max_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_max_vector</span><span class="p">))[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1360" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1360
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<pre style="margin: 0;">+<span id="LC1360" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">h_min_c</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">score_min</span><span class="p">)</span> <span class="o" style="font-weight: 600;">||</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1361
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<pre style="margin: 0;">+<span id="LC1361" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">h_max_c</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">score_max</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC1362" class="line" lang="cpp"> <span class="n" style="color: #333;">overflow</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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1524
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1363
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<pre style="margin: 0;"> <span id="LC1363" class="line" lang="cpp"> <span class="p">}</span></span>
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1364
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<pre style="margin: 0;"> <span id="LC1364" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1531,12 +1370,9 @@ void search16(s16info_s * s,</td>
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1531
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1370
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<pre style="margin: 0;"> <span id="LC1370" class="line" lang="cpp"></span>
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1532
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1371
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<pre style="margin: 0;"> <span id="LC1371" class="line" lang="cpp"> <span class="n" style="color: #333;">easy</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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1533
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1372
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<pre style="margin: 0;"> <span id="LC1372" class="line" lang="cpp"></span>
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1534
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<pre style="margin: 0;">-<span id="LC1534" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1535
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<pre style="margin: 0;">-<span id="LC1535" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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1536
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<pre style="margin: 0;">-<span id="LC1536" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1537
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<pre style="margin: 0;">-<span id="LC1537" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_setzero_si128</span><span class="p">();</span></span>
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1538
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<pre style="margin: 0;">-<span id="LC1538" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1539
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<pre style="margin: 0;">-<span id="LC1539" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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1373
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<pre style="margin: 0;">+<span id="LC1373" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_zero</span><span class="p">;</span></span>
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1374
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<pre style="margin: 0;">+<span id="LC1374" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC1375" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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1540
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1376
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<pre style="margin: 0;"> <span id="LC1376" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CHANNELS</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1541
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1377
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<pre style="margin: 0;"> <span id="LC1377" class="line" lang="cpp"> <span class="p">{</span></span>
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1542
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1378
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<pre style="margin: 0;"> <span id="LC1378" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">d_begin</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">d_end</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">])</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1557,11 +1393,7 @@ void search16(s16info_s * s,</td>
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1557
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1393
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<pre style="margin: 0;"> <span id="LC1393" class="line" lang="cpp"> <span class="p">{</span></span>
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1558
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1394
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<pre style="margin: 0;"> <span id="LC1394" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* sequence in channel c ended. change of sequence */</span></span>
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1559
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1395
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<pre style="margin: 0;"> <span id="LC1395" class="line" lang="cpp"></span>
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1560
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<pre style="margin: 0;">-<span id="LC1560" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1561
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<pre style="margin: 0;">-<span id="LC1561" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_xor</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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1562
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<pre style="margin: 0;">-<span id="LC1562" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1563
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<td class="diff-line-num new_line old" data-linenumber="1396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1563" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_xor_si128</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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1564
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<pre style="margin: 0;">-<span id="LC1564" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC1396" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_xor</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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1565
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1397
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<pre style="margin: 0;"> <span id="LC1397" class="line" lang="cpp"></span>
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1566
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1398
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<pre style="margin: 0;"> <span id="LC1398" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">cand_id</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">seq_id</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
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1567
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1399
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<pre style="margin: 0;"> <span id="LC1399" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1673,11 +1505,7 @@ void search16(s16info_s * s,</td>
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1673
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1505
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<pre style="margin: 0;"> <span id="LC1505" class="line" lang="cpp"> <span class="n" style="color: #333;">dseq</span><span class="p">[</span><span class="n" style="color: #333;">CHANNELS</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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1674
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1506
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<pre style="margin: 0;"> <span id="LC1506" class="line" lang="cpp"> <span class="p">}</span></span>
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1675
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1507
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<pre style="margin: 0;"> <span id="LC1507" class="line" lang="cpp"> <span class="p">}</span></span>
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1676
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<pre style="margin: 0;">-<span id="LC1676" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1677
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<pre style="margin: 0;">-<span id="LC1677" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_sld</span><span class="p">(</span><span class="n" style="color: #333;">T</span><span class="p">,</span> <span class="n" style="color: #333;">VZERO</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">);</span></span>
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1678
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<pre style="margin: 0;">-<span id="LC1678" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1679
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<pre style="margin: 0;">-<span id="LC1679" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_slli_si128</span><span class="p">(</span><span class="n" style="color: #333;">T</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">);</span></span>
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1680
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<pre style="margin: 0;">-<span id="LC1680" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC1508" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_shift_left</span><span class="p">(</span><span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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1681
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1509
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<pre style="margin: 0;"> <span id="LC1509" class="line" lang="cpp"> <span class="p">}</span></span>
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1682
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1510
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<pre style="margin: 0;"> <span id="LC1510" class="line" lang="cpp"></span>
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1683
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1511
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<pre style="margin: 0;"> <span id="LC1511" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">done</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">sequences</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1685" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1685,23 +1513,13 @@ void search16(s16info_s * s,</td>
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1513
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<pre style="margin: 0;"> <span id="LC1513" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC1514" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* make masked versions of QR and R for gaps in target */</span></span>
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1687
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1515
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<pre style="margin: 0;"> <span id="LC1515" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1688" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1689
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<pre style="margin: 0;">-<span id="LC1689" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_target_left</span><span class="p">);</span></span>
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1690
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<pre style="margin: 0;">-<span id="LC1690" class="line" lang="cpp"> <span class="n" style="color: #333;">M_R_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">R_target_left</span><span class="p">);</span></span>
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1691
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<td class="diff-line-num new_line old" data-linenumber="1516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1691" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1692
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<pre style="margin: 0;">-<span id="LC1692" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_and_si128</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_target_left</span><span class="p">);</span></span>
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1693
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<pre style="margin: 0;">-<span id="LC1693" class="line" lang="cpp"> <span class="n" style="color: #333;">M_R_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_and_si128</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">R_target_left</span><span class="p">);</span></span>
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1694
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<pre style="margin: 0;">-<span id="LC1694" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1516
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<pre style="margin: 0;">+<span id="LC1516" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_target_left</span><span class="p">);</span></span>
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1517
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<pre style="margin: 0;">+<span id="LC1517" class="line" lang="cpp"> <span class="n" style="color: #333;">M_R_target_left</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">R_target_left</span><span class="p">);</span></span>
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1695
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1518
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<pre style="margin: 0;"> <span id="LC1518" class="line" lang="cpp"></span>
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1696
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1519
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<pre style="margin: 0;"> <span id="LC1519" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* make masked versions of QR for gaps in query at target left end */</span></span>
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1697
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1520
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<pre style="margin: 0;"> <span id="LC1520" class="line" lang="cpp"></span>
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1698
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<pre style="margin: 0;">-<span id="LC1698" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1699
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<pre style="margin: 0;">-<span id="LC1699" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_query_interior</span><span class="p">);</span></span>
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1700
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<pre style="margin: 0;">-<span id="LC1700" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_query_right</span><span class="p">);</span></span>
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1701
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<pre style="margin: 0;">-<span id="LC1701" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1702
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<pre style="margin: 0;">-<span id="LC1702" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_and_si128</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_query_interior</span><span class="p">);</span></span>
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1703
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<pre style="margin: 0;">-<span id="LC1703" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_and_si128</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_query_right</span><span class="p">);</span></span>
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1704
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<pre style="margin: 0;">-<span id="LC1704" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC1521" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_query_interior</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_query_interior</span><span class="p">);</span></span>
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1522
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<pre style="margin: 0;">+<span id="LC1522" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_query_right</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_and</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">QR_query_right</span><span class="p">);</span></span>
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1705
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1523
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<pre style="margin: 0;"> <span id="LC1523" class="line" lang="cpp"></span>
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1706
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1524
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<pre style="margin: 0;"> <span id="LC1524" class="line" lang="cpp"> <span class="n" style="color: #333;">dprofile_fill16</span><span class="p">(</span><span class="n" style="color: #333;">dprofile</span><span class="p">,</span> <span class="p">(</span><span class="n" style="color: #333;">CELL</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">matrix</span><span class="p">,</span> <span class="n" style="color: #333;">dseq</span><span class="p">);</span></span>
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1707
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1525
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<pre style="margin: 0;"> <span id="LC1525" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1719,54 +1537,29 @@ void search16(s16info_s * s,</td>
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1719
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1537
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<pre style="margin: 0;"> <span id="LC1537" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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1538
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<pre style="margin: 0;"> <span id="LC1538" class="line" lang="cpp"> <span class="p">{</span></span>
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1539
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<pre style="margin: 0;"> <span id="LC1539" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* one or more sequences ended */</span></span>
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<pre style="margin: 0;">-<span id="LC1722" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">-<span id="LC1723" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">QR_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_right</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC1724" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1725" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">R_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">R_target_right</span><span class="p">,</span></span>
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1726
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<pre style="margin: 0;">-<span id="LC1726" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span><span class="p">);</span></span>
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1727
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<pre style="margin: 0;">-<span id="LC1727" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CDEPTH</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC1728" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1729" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_splat_s16</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1730" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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1731
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<pre style="margin: 0;">-<span id="LC1731" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CHANNELS</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC1732" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1733" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">d_begin</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">d_end</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">])</span> <span class="o" style="font-weight: 600;">&&</span></span>
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<pre style="margin: 0;">-<span id="LC1734" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">>=</span> <span class="p">((</span><span class="n" style="color: #333;">d_length</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">4</span><span class="p">)))</span></span>
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<pre style="margin: 0;">-<span id="LC1735" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1736" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_xor</span><span class="p">(</span><span class="n" style="color: #333;">M</span><span class="p">,</span> <span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1737" class="line" lang="cpp"> <span class="p">}</span></span>
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1738
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<pre style="margin: 0;">-<span id="LC1738" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_sld</span><span class="p">(</span><span class="n" style="color: #333;">T</span><span class="p">,</span> <span class="n" style="color: #333;">VZERO</span><span class="p">,</span> <span class="mi" style="color: #099;">2</span><span class="p">);</span></span>
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1739
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<pre style="margin: 0;">-<span id="LC1739" class="line" lang="cpp"> <span class="p">}</span></span>
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1740
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<pre style="margin: 0;">-<span id="LC1740" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_adds</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_interior</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC1741" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">QR_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC1742" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_adds</span><span class="p">(</span><span class="n" style="color: #333;">R_target_interior</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC1743" class="line" lang="cpp"> <span class="n" style="color: #333;">vec_and</span><span class="p">(</span><span class="n" style="color: #333;">R_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC1744" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC1745" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC1746" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">QR_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_right</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC1747" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC1540" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1749" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">R_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">R_target_right</span><span class="p">,</span></span>
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1750
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<pre style="margin: 0;">-<span id="LC1750" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC1541" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">QR_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">QR_target_right</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC1542" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target_interior</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC1543" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">R_diff</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">R_target_right</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC1544" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target_interior</span><span class="p">);</span></span>
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1545
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<pre style="margin: 0;"> <span id="LC1545" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CDEPTH</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1752
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1546
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<pre style="margin: 0;"> <span id="LC1546" class="line" lang="cpp"> <span class="p">{</span></span>
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1753
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<td class="diff-line-num new_line old" data-linenumber="1547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1753" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">_mm_setzero_si128</span></span><span class="p"><span class="idiff right">()</span>;</span></span>
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1754
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<pre style="margin: 0;">-<span id="LC1754" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">T</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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1547
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<pre style="margin: 0;">+<span id="LC1547" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_zero</span></span><span class="p">;</span></span>
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1548
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<pre style="margin: 0;">+<span id="LC1548" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">T<span class="idiff left right">T</span></span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">T0</span><span class="p">;</span></span>
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1755
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1549
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<pre style="margin: 0;"> <span id="LC1549" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CHANNELS</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1756
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1550
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<pre style="margin: 0;"> <span id="LC1550" class="line" lang="cpp"> <span class="p">{</span></span>
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1757
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1551
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<pre style="margin: 0;"> <span id="LC1551" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">d_begin</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">d_end</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">])</span> <span class="o" style="font-weight: 600;">&&</span></span>
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1758
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1552
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<pre style="margin: 0;"> <span id="LC1552" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">>=</span> <span class="p">((</span><span class="n" style="color: #333;">d_length</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">3</span><span class="p">)</span> <span class="o" style="font-weight: 600;">%</span> <span class="mi" style="color: #099;">4</span><span class="p">)))</span></span>
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1759
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1553
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<pre style="margin: 0;"> <span id="LC1553" class="line" lang="cpp"> <span class="p">{</span></span>
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1760
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<pre style="margin: 0;">-<span id="LC1760" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">_mm_xor_si128</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">M</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">T</span><span class="p">);</span></span>
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1554
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<pre style="margin: 0;">+<span id="LC1554" class="line" lang="cpp"> <span class="n" style="color: #333;">M</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">v_xor</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">M</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">T</span>T</span><span class="p">);</span></span>
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1761
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1555
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<pre style="margin: 0;"> <span id="LC1555" class="line" lang="cpp"> <span class="p">}</span></span>
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1762
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<pre style="margin: 0;">-<span id="LC1762" class="line" lang="cpp"> <span class="n" style="color: #333;">T</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_mm_slli_si128</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">T</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">2</span></span><span class="p">);</span></span>
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1556
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<pre style="margin: 0;">+<span id="LC1556" class="line" lang="cpp"> <span class="n" style="color: #333;">T<span class="idiff left">T</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">v_shift_left</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">TT</span></span><span class="p">);</span></span>
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1763
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1557
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<pre style="margin: 0;"> <span id="LC1557" class="line" lang="cpp"> <span class="p">}</span></span>
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1764
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<pre style="margin: 0;">-<span id="LC1764" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_adds_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_target_interior</span><span class="p">,</span></span>
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1765
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<pre style="margin: 0;">-<span id="LC1765" class="line" lang="cpp"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff right">_mm_and_si128</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1766
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<pre style="margin: 0;">-<span id="LC1766" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">_mm_adds_epi16</span></span><span class="p">(</span><span class="n" style="color: #333;">R_target_interior</span><span class="p">,</span></span>
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1767
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<pre style="margin: 0;">-<span id="LC1767" class="line" lang="cpp"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff right">_mm_and_si128</span></span><span class="p">(</span><span class="n" style="color: #333;">R_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1558
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<pre style="margin: 0;">+<span id="LC1558" class="line" lang="cpp"> <span class="n" style="color: #333;">QR_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_add</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_target_interior</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1559
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<pre style="margin: 0;">+<span id="LC1559" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">v_and</span></span><span class="p">(</span><span class="n" style="color: #333;">QR_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1560
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<pre style="margin: 0;">+<span id="LC1560" class="line" lang="cpp"> <span class="n" style="color: #333;">R_target</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">v_add</span></span><span class="p">(</span><span class="n" style="color: #333;">R_target_interior</span><span class="p">,</span></span>
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1561
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<pre style="margin: 0;">+<span id="LC1561" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">v_and</span></span><span class="p">(</span><span class="n" style="color: #333;">R_diff</span><span class="p">,</span> <span class="n" style="color: #333;">M</span><span class="p">));</span></span>
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1768
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1562
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<pre style="margin: 0;"> <span id="LC1562" class="line" lang="cpp"> <span class="p">}</span></span>
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1769
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<pre style="margin: 0;">-<span id="LC1769" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1770
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1563
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<pre style="margin: 0;"> <span id="LC1563" class="line" lang="cpp"> <span class="p">}</span></span>
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1771
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1564
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<pre style="margin: 0;"> <span id="LC1564" class="line" lang="cpp"></span>
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1772
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1565
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<pre style="margin: 0;"> <span id="LC1565" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1787" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1787,21 +1580,16 @@ void search16(s16info_s * s,</td>
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1787
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1580
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<pre style="margin: 0;"> <span id="LC1580" class="line" lang="cpp"> <span class="n" style="color: #333;">M_QR_query_right</span><span class="p">,</span></span>
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1788
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1581
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<pre style="margin: 0;"> <span id="LC1581" class="line" lang="cpp"> <span class="n" style="color: #333;">qlen</span><span class="p">,</span> <span class="n" style="color: #333;">dir</span><span class="p">);</span></span>
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1789
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1582
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<pre style="margin: 0;"> <span id="LC1582" class="line" lang="cpp"></span>
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1583
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<pre style="margin: 0;">+<span id="LC1583" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_min_vector</span><span class="p">;</span></span>
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1584
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<pre style="margin: 0;">+<span id="LC1584" class="line" lang="cpp"> <span class="n" style="color: #333;">VECTOR_SHORT</span> <span class="n" style="color: #333;">h_max_vector</span><span class="p">;</span></span>
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1585
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<pre style="margin: 0;">+<span id="LC1585" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_min_vector</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">);</span></span>
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1586
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<pre style="margin: 0;">+<span id="LC1586" class="line" lang="cpp"> <span class="n" style="color: #333;">v_store</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_max_vector</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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1790
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1587
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<pre style="margin: 0;"> <span id="LC1587" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">CHANNELS</span><span class="p">;</span> <span class="n" style="color: #333;">c</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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1791
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1588
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<pre style="margin: 0;"> <span id="LC1588" class="line" lang="cpp"> <span class="p">{</span></span>
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1792
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1589
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<pre style="margin: 0;"> <span id="LC1589" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">overflow</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">])</span></span>
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1793
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<pre style="margin: 0;"> <span id="LC1590" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1794" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_min_array</span><span class="p">[</span><span class="mi" style="color: #099;">8</span><span class="p">];</span></span>
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1795
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<pre style="margin: 0;">-<span id="LC1795" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_max_array</span><span class="p">[</span><span class="mi" style="color: #099;">8</span><span class="p">];</span></span>
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1796
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<pre style="margin: 0;">-<span id="LC1796" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1797
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<pre style="margin: 0;">-<span id="LC1797" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_min_array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min</span><span class="p">;</span></span>
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1798
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<pre style="margin: 0;">-<span id="LC1798" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_max_array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max</span><span class="p">;</span></span>
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1799
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<pre style="margin: 0;">-<span id="LC1799" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1800
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<pre style="margin: 0;">-<span id="LC1800" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_storeu_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_min_array</span><span class="p">,</span> <span class="n" style="color: #333;">h_min</span><span class="p">);</span></span>
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1801
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<pre style="margin: 0;">-<span id="LC1801" class="line" lang="cpp"> <span class="n" style="color: #333;">_mm_storeu_si128</span><span class="p">((</span><span class="n" style="color: #333;">VECTOR_SHORT</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">h_max_array</span><span class="p">,</span> <span class="n" style="color: #333;">h_max</span><span class="p">);</span></span>
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1802
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<pre style="margin: 0;">-<span id="LC1802" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1803
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<pre style="margin: 0;">-<span id="LC1803" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_min_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_min_array</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC1804" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_max_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">h_max_array</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
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<pre style="margin: 0;">+<span id="LC1591" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_min_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_min_vector</span><span class="p">))[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
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<pre style="margin: 0;">+<span id="LC1592" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">h_max_c</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">signed</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">h_max_vector</span><span class="p">))[</span><span class="n" style="color: #333;">c</span><span class="p">];</span></span>
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1805
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1593
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<pre style="margin: 0;"> <span id="LC1593" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">h_min_c</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">score_min</span><span class="p">)</span> <span class="o" style="font-weight: 600;">||</span></span>
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1806
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1594
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<pre style="margin: 0;"> <span id="LC1594" class="line" lang="cpp"> <span class="p">(</span><span class="n" style="color: #333;">h_max_c</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">score_max</span><span class="p">))</span></span>
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1807
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1595
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<pre style="margin: 0;"> <span id="LC1595" class="line" lang="cpp"> <span class="n" style="color: #333;">overflow</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1809" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1809,27 +1597,15 @@ void search16(s16info_s * s,</td>
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1809
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1597
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<pre style="margin: 0;"> <span id="LC1597" class="line" lang="cpp"> <span class="p">}</span></span>
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1810
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1598
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<pre style="margin: 0;"> <span id="LC1598" class="line" lang="cpp"> <span class="p">}</span></span>
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1811
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1599
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<pre style="margin: 0;"> <span id="LC1599" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC1812" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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1813
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<pre style="margin: 0;">-<span id="LC1813" class="line" lang="cpp"> <span class="n" style="color: #333;">H0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">H3</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1814
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<pre style="margin: 0;">-<span id="LC1814" class="line" lang="cpp"> <span class="n" style="color: #333;">H1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">H0</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1815
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<pre style="margin: 0;">-<span id="LC1815" class="line" lang="cpp"> <span class="n" style="color: #333;">H2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">H1</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1816
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<pre style="margin: 0;">-<span id="LC1816" class="line" lang="cpp"> <span class="n" style="color: #333;">H3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">H2</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1817
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<pre style="margin: 0;">-<span id="LC1817" class="line" lang="cpp"></span>
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1818
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<pre style="margin: 0;">-<span id="LC1818" class="line" lang="cpp"> <span class="n" style="color: #333;">F0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">F3</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1819
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<pre style="margin: 0;">-<span id="LC1819" class="line" lang="cpp"> <span class="n" style="color: #333;">F1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">F0</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1820
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<pre style="margin: 0;">-<span id="LC1820" class="line" lang="cpp"> <span class="n" style="color: #333;">F2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">F1</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1821
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<pre style="margin: 0;">-<span id="LC1821" class="line" lang="cpp"> <span class="n" style="color: #333;">F3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vec_subs</span><span class="p">(</span><span class="n" style="color: #333;">F2</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1822
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<pre style="margin: 0;">-<span id="LC1822" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC1823" class="line" lang="cpp"> <span class="n" style="color: #333;">H0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">H3</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1824
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<pre style="margin: 0;">-<span id="LC1824" class="line" lang="cpp"> <span class="n" style="color: #333;">H1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">H0</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1825
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<pre style="margin: 0;">-<span id="LC1825" class="line" lang="cpp"> <span class="n" style="color: #333;">H2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">H1</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1826
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<pre style="margin: 0;">-<span id="LC1826" class="line" lang="cpp"> <span class="n" style="color: #333;">H3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">H2</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1827
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<pre style="margin: 0;">-<span id="LC1827" class="line" lang="cpp"></span>
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1828
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<pre style="margin: 0;">-<span id="LC1828" class="line" lang="cpp"> <span class="n" style="color: #333;">F0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">F3</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1829
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<pre style="margin: 0;">-<span id="LC1829" class="line" lang="cpp"> <span class="n" style="color: #333;">F1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">F0</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1830" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1830
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<pre style="margin: 0;">-<span id="LC1830" class="line" lang="cpp"> <span class="n" style="color: #333;">F2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">F1</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1831" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1831
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<pre style="margin: 0;">-<span id="LC1831" class="line" lang="cpp"> <span class="n" style="color: #333;">F3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_mm_subs_epi16</span><span class="p">(</span><span class="n" style="color: #333;">F2</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1832" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC1600" class="line" lang="cpp"> <span class="n" style="color: #333;">H0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">H3</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1601
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<pre style="margin: 0;">+<span id="LC1601" class="line" lang="cpp"> <span class="n" style="color: #333;">H1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">H0</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1602
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<pre style="margin: 0;">+<span id="LC1602" class="line" lang="cpp"> <span class="n" style="color: #333;">H2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">H1</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1603
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<pre style="margin: 0;">+<span id="LC1603" class="line" lang="cpp"> <span class="n" style="color: #333;">H3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">H2</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1604
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<pre style="margin: 0;">+<span id="LC1604" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC1605" class="line" lang="cpp"> <span class="n" style="color: #333;">F0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">F3</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1606
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<pre style="margin: 0;">+<span id="LC1606" class="line" lang="cpp"> <span class="n" style="color: #333;">F1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">F0</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1607
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<pre style="margin: 0;">+<span id="LC1607" class="line" lang="cpp"> <span class="n" style="color: #333;">F2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">F1</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC1608" class="line" lang="cpp"> <span class="n" style="color: #333;">F3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">v_sub</span><span class="p">(</span><span class="n" style="color: #333;">F2</span><span class="p">,</span> <span class="n" style="color: #333;">R_query_left</span><span class="p">);</span></span>
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1609
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<pre style="margin: 0;"> <span id="LC1609" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC1610" class="line" lang="cpp"> <span class="n" style="color: #333;">dir</span> <span class="o" style="font-weight: 600;">+=</span> <span class="mi" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">*</span> <span class="mi" style="color: #099;">4</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">qlen</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC1611" class="line" lang="cpp"></span>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#0fd044a04525b2a4ea0a87be7b2912b8f1ba6256"><strong>src/cpu.cc</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -63,7 +63,59 @@</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/* This file contains code dependent on special cpu features. */</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/* The file may be compiled several times with different cpu options. */</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __aarch64__</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">increment_counters_from_bitmap</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">counters</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">totalbits</span><span class="p">)</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="cpp"><span class="p">{</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">uint8x16_t</span> <span class="n" style="color: #333;">c1</span> <span class="o" style="font-weight: 600;">=</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="cpp"> <span class="p">{</span> <span class="mh" style="color: #099;">0x01</span><span class="p">,</span> <span class="mh" style="color: #099;">0x01</span><span class="p">,</span> <span class="mh" style="color: #099;">0x02</span><span class="p">,</span> <span class="mh" style="color: #099;">0x02</span><span class="p">,</span> <span class="mh" style="color: #099;">0x04</span><span class="p">,</span> <span class="mh" style="color: #099;">0x04</span><span class="p">,</span> <span class="mh" style="color: #099;">0x08</span><span class="p">,</span> <span class="mh" style="color: #099;">0x08</span><span class="p">,</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cpp"> <span class="mh" style="color: #099;">0x10</span><span class="p">,</span> <span class="mh" style="color: #099;">0x10</span><span class="p">,</span> <span class="mh" style="color: #099;">0x20</span><span class="p">,</span> <span class="mh" style="color: #099;">0x20</span><span class="p">,</span> <span class="mh" style="color: #099;">0x40</span><span class="p">,</span> <span class="mh" style="color: #099;">0x40</span><span class="p">,</span> <span class="mh" style="color: #099;">0x80</span><span class="p">,</span> <span class="mh" style="color: #099;">0x80</span> <span class="p">};</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="cpp"></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">bitmap</span><span class="p">);</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cpp"> <span class="n" style="color: #333;">int16x8_t</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">q</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">int16x8_t</span> <span class="o" style="font-weight: 600;">*</span><span class="p">)(</span><span class="n" style="color: #333;">counters</span><span class="p">);</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">totalbits</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">15</span><span class="p">)</span> <span class="o" style="font-weight: 600;">/</span> <span class="mi" style="color: #099;">16</span><span class="p">;</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cpp"></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">r</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cpp"> <span class="p">{</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="cpp"> <span class="n" style="color: #333;">uint16x8_t</span> <span class="n" style="color: #333;">r0</span><span class="p">;</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cpp"> <span class="n" style="color: #333;">uint8x16_t</span> <span class="n" style="color: #333;">r1</span><span class="p">,</span> <span class="n" style="color: #333;">r2</span><span class="p">,</span> <span class="n" style="color: #333;">r3</span><span class="p">,</span> <span class="n" style="color: #333;">r4</span><span class="p">;</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cpp"> <span class="n" style="color: #333;">int16x8_t</span> <span class="n" style="color: #333;">r5</span><span class="p">,</span> <span class="n" style="color: #333;">r6</span><span class="p">;</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cpp"></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// load and duplicate short</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cpp"> <span class="n" style="color: #333;">r0</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vdupq_n_u16</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">p</span><span class="p">);</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="cpp"> <span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="cpp"></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// cast to bytes</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp"> <span class="n" style="color: #333;">r1</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vreinterpretq_u8_u16</span><span class="p">(</span><span class="n" style="color: #333;">r0</span><span class="p">);</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cpp"></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// bit test with mask giving 0x00 or 0xff</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cpp"> <span class="n" style="color: #333;">r2</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vtstq_u8</span><span class="p">(</span><span class="n" style="color: #333;">r1</span><span class="p">,</span> <span class="n" style="color: #333;">c1</span><span class="p">);</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="cpp"></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// transpose to duplicate even bytes</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="cpp"> <span class="n" style="color: #333;">r3</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vtrn1q_u8</span><span class="p">(</span><span class="n" style="color: #333;">r2</span><span class="p">,</span> <span class="n" style="color: #333;">r2</span><span class="p">);</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cpp"></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// transpose to duplicate odd bytes</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp"> <span class="n" style="color: #333;">r4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vtrn2q_u8</span><span class="p">(</span><span class="n" style="color: #333;">r2</span><span class="p">,</span> <span class="n" style="color: #333;">r2</span><span class="p">);</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cpp"></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// cast to signed 0x0000 or 0xffff</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="cpp"> <span class="n" style="color: #333;">r5</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vreinterpretq_s16_u8</span><span class="p">(</span><span class="n" style="color: #333;">r3</span><span class="p">);</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cpp"></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// cast to signed 0x0000 or 0xffff</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="cpp"> <span class="n" style="color: #333;">r6</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vreinterpretq_s16_u8</span><span class="p">(</span><span class="n" style="color: #333;">r4</span><span class="p">);</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="cpp"></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// subtract signed 0 or -1 (i.e add 0 or 1) with saturation to counter</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">q</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vqsubq_s16</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">q</span><span class="p">,</span> <span class="n" style="color: #333;">r5</span><span class="p">);</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="cpp"> <span class="n" style="color: #333;">q</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// subtract signed 0 or 1 (i.e. add 0 or 1) with saturation to counter</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">q</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vqsubq_s16</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">q</span><span class="p">,</span> <span class="n" style="color: #333;">r6</span><span class="p">);</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="cpp"> <span class="n" style="color: #333;">q</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="cpp"></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#elif __PPC__</span></span>
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119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">increment_counters_from_bitmap</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">counters</span><span class="p">,</span></span>
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,7 +154,7 @@ void increment_counters_from_bitmap(unsigned short * counters,</td>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#el<span class="idiff left right">se</span></span></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#el<span class="idiff left right">if __x86_64__</span></span></span>
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106
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="cpp"></span>
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107
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef SSSE3</span></span>
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108
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">increment_counters_from_bitmap_ssse3</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">counters</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -170,4 +222,8 @@ void increment_counters_from_bitmap_sse2(unsigned short * counters,</td>
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170
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222
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#error Unknown architecture</span></span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#595c098032bba671a3a3083cb47f44475ed94a83"><strong>src/cpu.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,16 +58,15 @@</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">increment_counters_from_bitmap</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">counters</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">totalbits</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __x86_64__</span></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">increment_counters_from_bitmap_sse2</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">counters</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">totalbits</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">increment_counters_from_bitmap_ssse3</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">counters</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">totalbits</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">increment_counters_from_bitmap</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">counters</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">totalbits</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#6f963d02896322eab19500836bca3f9a22619a35"><strong>src/fastqops.cc</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -889,7 +889,7 @@ void fastq_stats()</td>
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<pre style="margin: 0;"> <span id="LC889" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">fp_log</span><span class="p">,</span> <span class="s" style="color: #d14;">" Len Q=5 Q=10 Q=15 Q=20</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC890" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">fp_log</span><span class="p">,</span> <span class="s" style="color: #d14;">"----- ------ ------ ------ ------</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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891
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<pre style="margin: 0;"> <span id="LC891" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC892" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">len_max</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;"><span class="idiff left">len_max</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="mi" style="color: #099;"><span class="idiff right">2</span></span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">--</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC892" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">len_max</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;"><span class="idiff left">MAX</span></span><span class="p"><span class="idiff">(</span></span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">len_max</span></span><span class="o" style="font-weight: 600;"><span class="idiff">/</span></span><span class="mi" style="color: #099;"><span class="idiff">2</span></span><span class="p"><span class="idiff right">)</span>;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">--</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC893" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC894" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">read_percentage</span><span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC895" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> VSEARCH: a versatile open source tool for metagenomics</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2014-201<span class="idiff left right">8</span>, Torbjorn Rognes, Frederic Mahe and Tomas Flouri</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2014-201<span class="idiff left right">9</span>, Torbjorn Rognes, Frederic Mahe and Tomas Flouri</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> All rights reserved.</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Contact: Torbjorn Rognes <torognes@ifi.uio.no>,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -197,15 +197,28 @@ void results_show_uc_one(FILE * fp,</td>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> strand: + or -</span></span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> 0</span></span>
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> 0</span></span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> compressed alignment, e.g. 9I92M14D, or "=" if p<span class="idiff left right">re</span>fect alignment</span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> compressed alignment, e.g. 9I92M14D, or "=" if p<span class="idiff left right">er</span>fect alignment</span></span>
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201
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> query label</span></span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> target label</span></span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">hp</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">perfect</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">hp</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">matches</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">qseqlen</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span></span>
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="cpp"> <span class="p">((</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">)(</span><span class="n" style="color: #333;">qseqlen</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">db_getsequencelen</span><span class="p">(</span><span class="n" style="color: #333;">hp</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">target</span><span class="p">));</span></span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">perfect</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">opt_cluster_fast</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* cluster_fast */</span></span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* use = for identical sequences ignoring terminal gaps */</span></span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="cpp"> <span class="n" style="color: #333;">perfect</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">hp</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">matches</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">hp</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">internal_alignmentlength</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* cluster_size, cluster_smallmem, cluster_unoise */</span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* usearch_global, search_exact, allpairs_global */</span></span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* use = for strictly identical sequences */</span></span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="cpp"> <span class="n" style="color: #333;">perfect</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">hp</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">matches</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">hp</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">nwalignmentlength</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="cpp"> <span class="p">}</span></span>
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209
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222
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="cpp"></span>
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210
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223
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">fp</span><span class="p">,</span></span>
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211
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224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="cpp"> <span class="s" style="color: #d14;">"H</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">%d</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">%"</span> <span class="n" style="color: #333;">PRId64</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">%.1f</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">%c</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">0</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">0</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">%s</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">%s</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">%s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span></span>
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<li id="35fe4ade1b8de990f60c06f5d33f909fef22ba51">
<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#35fe4ade1b8de990f60c06f5d33f909fef22ba51"><strong>src/searchcore.cc</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -185,15 +185,15 @@ void search_topscores(struct searchinfo_s * si)</td>
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="cpp"></span>
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186
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">bitmap</span><span class="p">)</span></span>
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187
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="cpp"> <span class="p">{</span></span>
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188
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="cpp"> <span class="n" style="color: #333;">increment_counters_from_bitmap</span><span class="p">(</span><span class="n" style="color: #333;">si</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">kmers</span><span class="p">,</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span> <span class="n" style="color: #333;">indexed_count</span><span class="p">);</span></span>
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190
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __x86_64__</span></span>
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191
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">ssse3_present</span><span class="p">)</span></span>
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192
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="cpp"> <span class="n" style="color: #333;">increment_counters_from_bitmap_ssse3</span><span class="p">(</span><span class="n" style="color: #333;">si</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">kmers</span><span class="p">,</span></span>
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193
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="cpp"> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span> <span class="n" style="color: #333;">indexed_count</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="cpp"> <span class="n" style="color: #333;">increment_counters_from_bitmap_sse2</span><span class="p">(</span><span class="n" style="color: #333;">si</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">kmers</span><span class="p">,</span></span>
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196
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="cpp"> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span> <span class="n" style="color: #333;">indexed_count</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="cpp"> <span class="n" style="color: #333;">increment_counters_from_bitmap</span><span class="p">(</span><span class="n" style="color: #333;">si</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">kmers</span><span class="p">,</span> <span class="n" style="color: #333;">bitmap</span><span class="p">,</span> <span class="n" style="color: #333;">indexed_count</span><span class="p">);</span></span>
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197
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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198
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="cpp"> <span class="p">}</span></span>
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199
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#b0109d980457466d1deec0f79c45e2b54114fdd5"><strong>src/vsearch.cc</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -278,6 +278,7 @@ int64_t opt_wordlength;</td>
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278
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/* cpu features available */</span></span>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">altivec_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">neon_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">mmx_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">sse_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">int64_t</span> <span class="n" style="color: #333;">sse2_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -300,7 +301,7 @@ FILE * fp_log = 0;</td>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">STDIN_NAME</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="s" style="color: #d14;">"/dev/stdin"</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">STDOUT_NAME</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">char</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="s" style="color: #d14;">"/dev/stdout"</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if<span class="idiff left right">ndef __PPC</span>__</span></span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if<span class="idiff left right">def __x86_64</span>__</span></span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define cpuid(f1, f2, a, b, c, d) \</span></span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> __asm__ __volatile__ ("cpuid" \</span></span>
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;"> : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -309,9 +310,16 @@ char * STDOUT_NAME = (char*) "/dev/stdout";</td>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">cpu_features_detect</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="cpp"><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="cpp"> <span class="n" style="color: #333;">altivec_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __aarch64__</span></span>
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __ARM_NEON</span></span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/* may check /proc/cpuinfo for asimd or neon */</span></span>
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="cpp"> <span class="n" style="color: #333;">neon_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#error ARM Neon not present</span></span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#elif __PPC__</span></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="cpp"> <span class="n" style="color: #333;">altivec_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#elif __x86_64__</span></span>
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">c</span><span class="p">,</span> <span class="n" style="color: #333;">d</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC324" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC325" class="line" lang="cpp"> <span class="n" style="color: #333;">cpuid</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">a</span><span class="p">,</span> <span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">c</span><span class="p">,</span> <span class="n" style="color: #333;">d</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -336,12 +344,16 @@ void cpu_features_detect()</td>
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="cpp"> <span class="n" style="color: #333;">avx2_present</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">>></span> <span class="mi" style="color: #099;">5</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="cpp"> <span class="p">}</span></span>
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346
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="cpp"> <span class="p">}</span></span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#error Unknown architecture</span></span>
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339
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349
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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340
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350
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<pre style="margin: 0;"> <span id="LC350" class="line" lang="cpp"><span class="p">}</span></span>
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341
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351
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<pre style="margin: 0;"> <span id="LC351" class="line" lang="cpp"></span>
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342
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352
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<pre style="margin: 0;"> <span id="LC352" class="line" lang="cpp"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">cpu_features_show</span><span class="p">()</span></span>
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343
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353
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<pre style="margin: 0;"> <span id="LC353" class="line" lang="cpp"><span class="p">{</span></span>
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344
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354
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<pre style="margin: 0;"> <span id="LC354" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">"CPU features:"</span><span class="p">);</span></span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">neon_present</span><span class="p">)</span></span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">" neon"</span><span class="p">);</span></span>
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345
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357
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<pre style="margin: 0;"> <span id="LC357" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">altivec_present</span><span class="p">)</span></span>
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346
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358
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<pre style="margin: 0;"> <span id="LC358" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stderr</span><span class="p">,</span> <span class="s" style="color: #d14;">" altivec"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
347
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359
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<pre style="margin: 0;"> <span id="LC359" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">mmx_present</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2962" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2974" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2962,7 +2974,7 @@ int main(int argc, char** argv)</td>
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2962
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2974
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<pre style="margin: 0;"> <span id="LC2974" class="line" lang="cpp"></span>
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<td class="diff-line-num old_line" data-linenumber="2963" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2963
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2975
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<pre style="margin: 0;"> <span id="LC2975" class="line" lang="cpp"> <span class="n" style="color: #333;">dynlibs_open</span><span class="p">();</span></span>
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<td class="diff-line-num old_line" data-linenumber="2964" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2964
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<td class="diff-line-num new_line" data-linenumber="2976" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2976
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<pre style="margin: 0;"> <span id="LC2976" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="2965" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2965
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<td class="diff-line-num new_line old" data-linenumber="2977" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2965" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if<span class="idiff left right">ndef __PPC</span>__</span></span>
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<td class="diff-line-num new old_line" data-linenumber="2966" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2977" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2977
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<pre style="margin: 0;">+<span id="LC2977" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if<span class="idiff left right">def __x86_64</span>__</span></span>
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<td class="diff-line-num old_line" data-linenumber="2966" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2966
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<td class="diff-line-num new_line" data-linenumber="2978" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2978
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<pre style="margin: 0;"> <span id="LC2978" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">sse2_present</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2967" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2967
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<td class="diff-line-num new_line" data-linenumber="2979" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2979
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<pre style="margin: 0;"> <span id="LC2979" class="line" lang="cpp"> <span class="n" style="color: #333;">fatal</span><span class="p">(</span><span class="s" style="color: #d14;">"Sorry, this program requires a cpu with SSE2."</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="2968" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2968
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<td class="diff-line-num new_line" data-linenumber="2980" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2980
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<pre style="margin: 0;"> <span id="LC2980" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<li id="d5c50f833cab4828d6d2b3f54dda35a42237db09">
<a href="https://salsa.debian.org/med-team/vsearch/compare/5345c3ee2741bbbf920f3de4509abd07f074be2b...03a0889a8328c78e2a9c45ec67db539e3bee1268#d5c50f833cab4828d6d2b3f54dda35a42237db09"><strong>src/vsearch.h</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,7 +96,17 @@</td>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PROG_NAME PACKAGE</span></span>
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PROG_VERSION PACKAGE_VERSION</span></span>
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98
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __PPC__</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __x86_64__</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="c"></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PROG_CPU "x86_64"</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __SSE2__</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <emmintrin.h></span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __SSSE3__</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <tmmintrin.h></span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="c"></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#elif __PPC__</span></span>
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100
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="c"></span>
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101
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __LITTLE_ENDIAN__</span></span>
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102
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PROG_CPU "ppc64le"</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -105,17 +115,14 @@</td>
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105
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#error Big endian ppc64 CPUs not supported</span></span>
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106
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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107
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="c"></span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#el<span class="idiff left right">se</span></span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#el<span class="idiff left right">if __aarch64__</span></span></span>
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109
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119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="c"></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PROG_CPU "x86_64"</span></span>
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<td class="diff-line-num new old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define PROG_CPU "aarch64"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <arm_neon.h></span></span>
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111
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<td class="diff-line-num new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="c"></span>
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112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __SSE2__</span></span>
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<td class="diff-line-num old old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <emmintrin.h></span></span>
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<td class="diff-line-num old old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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115
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124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="c"></span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#ifdef __SSSE3__</span></span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <tmmintrin.h></span></span>
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118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#error Unknown architecture (not ppc64le, aarch64 or x86_64)</span></span>
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<td class="diff-line-num old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
119
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
120
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<td class="diff-line-num new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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121
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="c"></span>
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