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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/hmmer2">Debian Med / hmmer2</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer2/commit/0fdf55abecb9b5c299f5b2380edc9fb61b22fb0c">0fdf55ab</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-01-11T19:58:58Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup testsuite after test before installing it as example
</pre>
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<strong><a href="https://salsa.debian.org/med-team/hmmer2/commit/d2f4e30e7bdd4e2535f29c05964940b3150aa62a">d2f4e30e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-11T20:54:02Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix installation of manpages
</pre>
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<h4>3 changed files:</h4>
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<a href="#79ae6b7e4db43ffa35bbc76a20ba5b4fbe3c498e">
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+
debian/patches/fix_install_man.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="79ae6b7e4db43ffa35bbc76a20ba5b4fbe3c498e">
<a href="https://salsa.debian.org/med-team/hmmer2/compare/d6aae46c87b1306f95e80e033411d66eb8e67f73...d2f4e30e7bdd4e2535f29c05964940b3150aa62a#79ae6b7e4db43ffa35bbc76a20ba5b4fbe3c498e"><strong>debian/patches/fix_install_man.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: Fri, 11 Jan 2019 15:43:07 +0100</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Description: Fix installation of manpages</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -60,8 +60,8 @@ install:</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> for file in $(PROGS) ; do\</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> cp src/$$file "$(BINDIR)/$$file""$(PROGSUFFIX)" ;\</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> done</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for file in hmmer2 $(ls documentation/man/); do\</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- install -D documentation/man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for file in documentation/man/*.man ; do\</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ install -D $$file $(MANDIR)/man$(MANSUFFIX)/`basename $$file .man`.$(MANSUFFIX);\</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> done</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> # Reverses the steps of "make install". However, this should be handled</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/hmmer2/compare/d6aae46c87b1306f95e80e033411d66eb8e67f73...d2f4e30e7bdd4e2535f29c05964940b3150aa62a#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,3 +4,4 @@ fix_typo.patch</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">fix_install.patch</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">hardening.patch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">#static_lib.patch</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">fix_install_man.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/hmmer2/compare/d6aae46c87b1306f95e80e033411d66eb8e67f73...d2f4e30e7bdd4e2535f29c05964940b3150aa62a#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,12 +33,14 @@ override_dh_auto_install:</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> rename 's/^hmm(.+)2/hmm2$$1/;' $(CURDIR)/debian/tmp/bin/*</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> cd $(CURDIR)/debian/tmp/bin; rename 's/^hmm(.+)2/hmm2$$1/;' *</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> cd $(CURDIR)/debian/tmp/share/man/man1; rename 's/^hmm(.+)2/hmm2$$1/;' *</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> # mv $(CURDIR)/debian/tmp/share/man/man1/hmm2er.1 $(CURDIR)/debian/tmp/share/man/man1/hmmer2.1</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> rename 's/^hmm(.+)2/hmm2$$1/;' $(CURDIR)/debian/tmp/share/man/man1/*</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> mv $(CURDIR)/debian/tmp/share/man/man1/hmm2er.1 $(CURDIR)/debian/tmp/share/man/man1/hmmer2.1</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> # lkajan: resolve man page hypen issue:</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' $(CURDIR)/debian/tmp/share/man/man1/*</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">override_dh_installexamples:</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> dh_installexamples</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> cd testsuite && make clean</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> mkdir -p $(sampledir);</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> sed -i "s#hmm#hmm2#g" testsuite/exercises.sqc</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> rm -f testsuite/*.ssi;</span>
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