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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/htslib">Debian Med / htslib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/htslib/commit/e0408336cf942d082b5b2eafd96e3fb29bbe3765">e0408336</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-15T14:10:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try the ppc64el targeted floating point patch again
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htslib/commit/fc16055bfb16376d7fe4e69210c80751304fe717">fc16055b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-15T14:14:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bring the ppc64el & i386 pkg-config enhancements to unstable.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/htslib/commit/0d044593e685e071f91060056bd40ec509773019">0d044593</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-15T14:51:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">clean up version
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#04876df4215a9666af25987a0f1a6eafe80ade3b">
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+
debian/patches/no_git_version
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</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/htslib/compare/f08c619b2a48f9dce44872d53973ed93e10d9d2a...0d044593e685e071f91060056bd40ec509773019#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">htslib</span> <span class="p">(</span><span class="m" style="color: #099;">1.9</span><span class="p">-</span><span class="m" style="color: #099;">9</span><span class="p">)</span> <span class="n" style="color: #333;">UNRELEASED</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">htslib</span> <span class="p">(</span><span class="m" style="color: #099;">1.9</span><span class="p">-</span><span class="m" style="color: #099;">9</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Bring</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">ppc64el</span> <span class="p">&</span> <span class="n" style="color: #333;">i386</span> <span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">config</span> <span class="n" style="color: #333;">enhancements</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">unstable</span><span class="p">.</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Michael</span> <span class="n" style="color: #333;">R</span><span class="p">.</span> <span class="n" style="color: #333;">Crusoe</span> <span class="p"><</span><span class="n" style="color: #333;">michael</span><span class="p">.</span><span class="n" style="color: #333;">crusoe</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span> <span class="n" style="color: #333;">Tue</span><span class="p">,</span> <span class="m" style="color: #099;">15</span> <span class="n" style="color: #333;">Jan</span> <span class="m" style="color: #099;">2019</span> <span class="m" style="color: #099;">06</span><span class="p">:</span><span class="m" style="color: #099;">13</span><span class="p">:</span><span class="m" style="color: #099;">44</span> <span class="p">-</span><span class="m" style="color: #099;">0800</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"><span class="n" style="color: #333;">htslib</span> <span class="p">(</span><span class="m" style="color: #099;">1.9</span><span class="p">-</span><span class="m" style="color: #099;">9</span><span class="p">~</span><span class="n" style="color: #333;">floatingpoint0</span><span class="p">)</span> <span class="n" style="color: #333;">experimental</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">low</span></span>
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2
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"></span>
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3
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">add</span> <span class="n" style="color: #333;">SSE</span> <span class="n" style="color: #333;">flags</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">i386</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">pkg</span><span class="p">-</span><span class="n" style="color: #333;">config</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Try</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">ppc64el</span> <span class="n" style="color: #333;">targeted</span> <span class="n" style="color: #333;">floating</span> <span class="n" style="color: #333;">point</span> <span class="n" style="color: #333;">patch</span> <span class="n" style="color: #333;">again</span> <span class="p">&</span> <span class="n" style="color: #333;">re</span><span class="p">-</span><span class="n" style="color: #333;">enable</span> <span class="p">-</span><span class="n" style="color: #333;">O2</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Michael</span> <span class="n" style="color: #333;">R</span><span class="p">.</span> <span class="n" style="color: #333;">Crusoe</span> <span class="p"><</span><span class="n" style="color: #333;">michael</span><span class="p">.</span><span class="n" style="color: #333;">crusoe</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span> <span class="n" style="color: #333;">Wed</span><span class="p">,</span> <span class="m" style="color: #099;">02</span> <span class="n" style="color: #333;">Jan</span> <span class="m" style="color: #099;">2019</span> <span class="m" style="color: #099;">06</span><span class="p">:</span><span class="m" style="color: #099;">34</span><span class="p">:</span><span class="m" style="color: #099;">33</span> <span class="p">-</span><span class="m" style="color: #099;">0800</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="mosel"></span>
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<li id="04876df4215a9666af25987a0f1a6eafe80ade3b">
<a href="https://salsa.debian.org/med-team/htslib/compare/f08c619b2a48f9dce44872d53973ed93e10d9d2a...0d044593e685e071f91060056bd40ec509773019#04876df4215a9666af25987a0f1a6eafe80ade3b"><strong>debian/patches/no_git_version</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Michael R. Crusoe <michael.crusoe@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Description: Don't check git tags for versioning</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- htslib.orig/version.sh</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ htslib/version.sh</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -4,11 +4,11 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> VERSION=1.9</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> # If we have a git clone, then check against the current tag</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-if [ -e .git ]</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-then</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- # If we ever get to 10.x this will need to be more liberal</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- VERSION=`git describe --match '[0-9].[0-9]*' --dirty`</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-fi</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# if [ -e .git ]</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# then</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# # If we ever get to 10.x this will need to be more liberal</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# VERSION=`git describe --match '[0-9].[0-9]*' --dirty`</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# fi</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> # Numeric version is for use in .dylib or .so libraries</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> #</span></pre>
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<a href="https://salsa.debian.org/med-team/htslib/compare/f08c619b2a48f9dce44872d53973ed93e10d9d2a...0d044593e685e071f91060056bd40ec509773019#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">no_git_version</span>
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1
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">define_PATH_MAX.patch</span>
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2
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">fPIC.patch</span>
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3
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">testShebang.patch</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"><span class="idiff left right">#</span>fix_float_precision</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">fix_float_precision</span></pre>
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<a href="https://salsa.debian.org/med-team/htslib/compare/f08c619b2a48f9dce44872d53973ed93e10d9d2a...0d044593e685e071f91060056bd40ec509773019#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"># export DEB_BUILD_MAINT_OPTIONS = hardening=+all # Build fails due to -fpie</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">export DH_VERBOSE=1</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,7 +26,7 @@ endif</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> cp -a test test_backup</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> autoconf</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> dh_auto_configure -- --enable-libcurl</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> dh_auto_build -- \</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> CFLAGS="$$(dpkg-buildflags --get CFLAGS)" \</span>
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