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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/7d2be2070c59329743922675bbac565a0d1db5c9">7d2be207</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-01-17T14:09:34Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Preparing for new upstream release.
Has adopted Debian's changes for Python3-transition.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/6daf8eae90806c6f5fba09be6ea22ace382278ae">6daf8eae</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-01-17T14:10:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/02657876b31669c7085f77b52d6255ba1b90495f">02657876</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-01-17T14:11:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.1.2'
Update to upstream version '1.1.2'
with Debian dir 57eee0eaeac66d801fa98054343e632e30352b23</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/0402c98eaeeba5fb0a5689c78fdfbf6707b598f2">0402c98e</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-01-17T15:39:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Lintian-motivated changes.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#059a93c69080af2f6054c5324203b7af73cc5b83">
bcbio/bam/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e2a5482df2cfb77e36bb48de8be98a8a2778fe28">
bcbio/bam/callable.py
</a>
</li>
<li class="file-stats">
<a href="#98b2f62d205effd850357163777387f5fef510fd">
bcbio/bam/fasta.py
</a>
</li>
<li class="file-stats">
<a href="#182fba4769123c455cd02418f79d193a381ad1c4">
bcbio/bam/fastq.py
</a>
</li>
<li class="file-stats">
<a href="#79a3c0130b14ac0d0d9bfb4ab751ac169e4229a6">
bcbio/bam/readstats.py
</a>
</li>
<li class="file-stats">
<a href="#b72a55f5bad4e4fcff090e6c68bd1d7db6c5a36f">
bcbio/bam/trim.py
</a>
</li>
<li class="file-stats">
<a href="#e518229f249f53b16d0dd891314f18afa565e3cb">
bcbio/broad/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#cf71129b76ffbf8055990dcd39c602522edf1d63">
bcbio/broad/metrics.py
</a>
</li>
<li class="file-stats">
<a href="#db6099147d782b81be3efa804f6a41b2a6b7ebf5">
bcbio/broad/picardrun.py
</a>
</li>
<li class="file-stats">
<a href="#fb17eef4888c4f7198909ebc1616eb92a3fed380">
bcbio/chipseq/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#4eabad8cbe351e3e3d7466ee25d9d970b164368a">
bcbio/chipseq/macs2.py
</a>
</li>
<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
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</li>
<li class="file-stats">
<a href="#2d356a30008ed932f27e4ace4ff645a2231fa5de">
bcbio/cwl/create.py
</a>
</li>
<li class="file-stats">
<a href="#9d1b2d9542eb07c5b8d3680169848427c1e5d46d">
bcbio/cwl/cwlutils.py
</a>
</li>
<li class="file-stats">
<a href="#f6af6837df6254f77d2faec43d98066631097b5e">
bcbio/cwl/defs.py
</a>
</li>
<li class="file-stats">
<a href="#1b659f58ae5c6fb1faeab633dcdd75182ee896da">
<span class="new-file">
+
bcbio/cwl/hpc.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#f2ba89993c849dbeadcec054f78f256833b12717">
bcbio/cwl/main.py
</a>
</li>
<li class="file-stats">
<a href="#3fe38e0e6f6bb2fb451c38b6cd908de9ba5992b2">
bcbio/cwl/tool.py
</a>
</li>
<li class="file-stats">
<a href="#86f5e930c36509ffef1d2e158fda6d89e6b19e5f">
bcbio/cwl/workflow.py
</a>
</li>
<li class="file-stats">
<a href="#6f40b89fe914659bfb798bcc12dc64e358ffae83">
<span class="new-file">
+
bcbio/data/umis/10x_v2-cb1.txt.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#b55fba838b0555a10db7c0c1bca169a51e562c7a">
<span class="new-file">
+
bcbio/data/umis/10x_v2-transform.json
</span>
</a>
</li>
<li class="file-stats">
<a href="#5d6ed7d234db092e3741adcd6ce91775fc9b0b4a">
<span class="deleted-file">
−
bcbio/data/umis/harvard-indrop-v2-cb1.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#9db017121967cab7c3243d69ba00629ed1b43140">
<span class="new-file">
+
bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#aa4541b65d40a8bc309dae7db7216011ab225313">
<span class="deleted-file">
−
bcbio/data/umis/harvard-indrop-v2-cb2.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#be59cf06bf9fdd5b10f5e5e75e8bf302f72c9986">
<span class="new-file">
+
bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz
</span>
</a>
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<li class="file-stats">
<a href="#2cef19c75e2afb763af57b0b2a6f9a60ec0bb82b">
<span class="deleted-file">
−
bcbio/data/umis/harvard-indrop-v3-cb1.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#6db01eb1f563b98689dc0df28b8445f8cfdd0e37">
<span class="new-file">
+
bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/bcbio/compare/09e0b28ed48105785a9ae4b9bd7a7f86efbb2cb1...0402c98eaeeba5fb0a5689c78fdfbf6707b598f2">View it on GitLab</a>.
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