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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pybedtools">Debian Med / python-pybedtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/commit/03b1cb47ca5beb8c23f87620d3e10ae57f0ebbc4">03b1cb47</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-19T14:43:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fixing license info for GPL 2.0-only files
FTPmaster found this. Created issue
https://github.com/daler/pybedtools/issues/271
to get this homogenized.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/commit/04e57fd7a52f8d0d6e269c4f45c397b12a798d60">04e57fd7</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-19T15:40:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Documentation is not python3-specific
</pre>
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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</li>
<li class="file-stats">
<a href="#578be4b58fdab4ba21d670e59e4300088019188b">
debian/python3-pybedtools-doc.doc-base
→
debian/python-pybedtools-doc.doc-base
</a>
</li>
<li class="file-stats">
<a href="#066c1d7890b3f9377a373a840e8880984674ea00">
debian/python3-pybedtools-doc.docs
→
debian/python-pybedtools-doc.docs
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</li>
<li class="file-stats">
<a href="#c281699ca1ea2c60dbbbcd77d0b9855ac653a959">
debian/python3-pybedtools-doc.examples
→
debian/python-pybedtools-doc.examples
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</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-pybedtools/compare/8517fbcfee3ae32cea6c08200a92b6a66a66b7a2...04e57fd7a52f8d0d6e269c4f45c397b12a798d60#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,14 @@ python-pybedtools (0.8.0-1) unstable; urgency=medium</td>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> - No Python2 packages</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> - Vcs links adapted for new home on salsa.d.o</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Thu, 17 Jan 2019 17:39:31 +0100</span>
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<td class="diff-line-num new old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * d/copyright</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> - adjusted paths for LGPL 2.1 files</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> - added notion of GPL-2 (not later) files, credits for spotting</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> those go to Thorsten Alteholz</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Created issue https://github.com/daler/pybedtools/issues/271</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> proposing to homogenize that licensing.</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sat, 19 Jan 2019 15:41:02 +0100</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">python-pybedtools (0.7.10-2.1) REMOVED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/python-pybedtools/compare/8517fbcfee3ae32cea6c08200a92b6a66a66b7a2...04e57fd7a52f8d0d6e269c4f45c397b12a798d60#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -43,7 +43,8 @@ Package: python3-pybedtools</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> ${shlibs:Depends},</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">Suggests: python-pybedtools-doc</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext">Description: Python 3 wrapper around BEDTools for bioinformatics work</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> The BEDTools suite of programs is widely used for genomic interval</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,7 +52,7 @@ Description: Python 3 wrapper around BEDTools for bioinformatics work</td>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> This is the Python 3 version.</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext">Package: python<span class="idiff left right">3</span>-pybedtools-doc</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">Package: python-pybedtools-doc</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">Section: doc</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<a href="https://salsa.debian.org/med-team/python-pybedtools/compare/8517fbcfee3ae32cea6c08200a92b6a66a66b7a2...04e57fd7a52f8d0d6e269c4f45c397b12a798d60#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,8 +7,40 @@ Copyright: 2010-2015 Ryan Dale</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> 2009 Aaron Quinlan <aaronquinlan@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">License: GPL-2+</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Files: src/gzstream.cpp</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> src/gzstream.h</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: pybedtools/include/bedFile.cpp</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> pybedtools/include/bedFile.h</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> pybedtools/include/fileType.cpp</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> pybedtools/include/fileType.h</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Copyright: 2009 - Aaron Quinlan <aaronquinlan@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> Hall Laboratory</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> Department of Biochemistry and Molecular Genetics</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> University of Virginia</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">License: GPL-2</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">License: GPL-2</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> This program is free software; you can redistribute it</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> and/or modify it under the terms of the GNU General Public</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> License as published by the Free Software Foundation at</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> version 2 of the License.</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> .</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> This program is distributed in the hope that it will be</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> useful, but WITHOUT ANY WARRANTY; without even the implied</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> PURPOSE. See the GNU General Public License for more</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> details.</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> .</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> You should have received a copy of the GNU General Public</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> License along with this package; if not, write to the Free</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> Software Foundation, Inc., 51 Franklin St, Fifth Floor,</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> Boston, MA 02110-1301 USA</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> On Debian systems, the full text of the GNU General Public</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> License version 2 can be found in the file</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> `/usr/share/common-licenses/GPL-2'.</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">Files: pybedtools/include/gzstream.cpp</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> pybedtools/include/gzstream.h</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">Copyright: 2001, Deepak Bandyopadhyay, Lutz Kettner</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext">License: LGPL-2.1+</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> This program is free software; you can redistribute it and/or modify</span>
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<a href="https://salsa.debian.org/med-team/python-pybedtools/compare/8517fbcfee3ae32cea6c08200a92b6a66a66b7a2...04e57fd7a52f8d0d6e269c4f45c397b12a798d60#578be4b58fdab4ba21d670e59e4300088019188b"><strong>debian/python3-pybedtools-doc.doc-base</strong>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,5 +7,5 @@ Abstract: Python wrapper around BEDTools for bioinformatics work</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Format: HTML</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/python<span class="idiff left right">3</span>-pybedtools-doc/html/*</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Index: /usr/share/doc/python<span class="idiff left right">3</span>-pybedtools-doc/html/index.html</span></pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/python-pybedtools-doc/html/*</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Index: /usr/share/doc/python-pybedtools-doc/html/index.html</span></pre>
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