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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/gatb-core">Debian Med / gatb-core</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/3bd66b2edf5eb11d6e492f31146e4f9a08e9843b">3bd66b2e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T12:10:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install json.hpp since it is refrenced in header files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/bbb513e48d509a0a3e9ecbc64fd4f6300c8bedcd">bbb513e4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T12:11:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/c45cf28d3902ed67f2d359ebd69d1f6d8dee6eb5">c45cf28d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T12:11:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.3.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/3d7e81de3b23757073f54eb84dc2f9cc1c879c98">3d7e81de</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T13:07:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix installation sequence
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/579c61854eb8990a73727cbe0380a5c468e76323">579c6185</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T13:41:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Typo
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/d696ffcbc3b298979b2eda492434cc28fa9c5feb">d696ffcb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T13:50:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/b945a9fed2b2ee0f23d0446c612511bd8ef1ba08">b945a9fe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T14:43:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add some selected patches from upstream that are used for minia
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/3b21f2929f559ea3fb02e2452a8aa89b65c8ba6b">3b21f292</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T15:20:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Manually check out the commit that is used as submodule for discosnp (minia has a previous commit as submodule)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/75cbd09b8831e9a75766136964ebe4f3a6566e6b">75cbd09b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T15:21:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.4.1+git20180206.6f8fce8+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/def53d88f828f5345623bb167f5764c45bf4e936">def53d88</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T15:21:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated version 1.4.1+git20180206.6f8fce8+dfsg from 'upstream/1.4.1+git20180206.6f8fce8+dfsg'
with Debian dir 6120ca9f283e696663b22d3917aceef31923386b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/f24b78870777b4419eedc042c1b037bcda31d128">f24b7887</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T15:26:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream commit to fit needs of minia and discosnp
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/1e3f6391c63f53ae92905e768d1d4d47c49dba6d">1e3f6391</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T15:29:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add symbols file matching symbols of version 1.4.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/e453550a2631ead48f54d86215e4cf491de597e5">e453550a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T15:55:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Symbols changed - we need to bump SOVERSION
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/14a8b5bf05ccd740a3c9015debc509530f1154c6">14a8b5bf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T15:58:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump SOVERSION due to changed symbols
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gatb-core/commit/b87033d57ecf3930e2942c4fda488df6011f85a1">b87033d5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T16:09:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#56274b52fd67442ee91c7f1f1d1f0b69b4ce7ae3">
<span class="new-file">
+
debian/libgatbcore-dev.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#000e98d5d300d8422c719bbc2b92f78407a5c123">
<span class="new-file">
+
debian/libgatbcore1.symbols
</span>
</a>
</li>
<li class="file-stats">
<a href="#464a94d03c173f42ad1504edb3051e19759174ff">
<span class="new-file">
+
debian/patches/0c580ab.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#6c29232b2227ce1235c80b0cd4372cb9473e143a">
<span class="new-file">
+
debian/patches/44d5a44.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#d8c09abd48cb88089b5acea41f95f797e5e74bef">
<span class="new-file">
+
debian/patches/5d45664.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#d103d9ae862e4cd15a47e1d71a7b4c814c4fd1bb">
<span class="new-file">
+
debian/patches/61c5ee1.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#7f78be64c950e7a6c3b26dceb1da93431b61389a">
<span class="new-file">
+
debian/patches/da4ceed.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#3639d2c5428bddf98c97b23fe81c9e45814e996d">
debian/patches/fix_install_location.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#a594803cedfe48d71f4af12f7013ff549bf13a98">
debian/patches/set_soversion.patch
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
debian/patches/spelling.patch
</a>
</li>
<li class="file-stats">
<a href="#cdad712c0d039ed1dfcfad33f824c93fea76ad8a">
debian/patches/use_debian_packaged_hdf5.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#31c00ce3cbe73348c779c23d6f94b9a7b382424d">
<span class="deleted-file">
−
gatb-core/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#4c007bda60857aed5186f73b4dd88ee753952d0d">
gatb-core/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#e1acb41c36c9a72dd08657cd23d906421e635a4b">
<span class="deleted-file">
−
gatb-core/doc/book/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#53450535e7aced628dbbfde414428a5d1e27694e">
gatb-core/src/gatb/bank/api/IBank.hpp
</a>
</li>
<li class="file-stats">
<a href="#9f4252ee8bd2235d6cefbe86f009dd2541067dc5">
gatb-core/src/gatb/bank/impl/AbstractBank.hpp
</a>
</li>
<li class="file-stats">
<a href="#0b34b5f8c9585ef64fdb35942fa2a80787665e41">
gatb-core/src/gatb/bank/impl/BankComposite.hpp
</a>
</li>
<li class="file-stats">
<a href="#490f86cdfc07e7db3455fffd8859052bd5dbeb50">
gatb-core/src/gatb/bcalm2/bglue_algo.cpp
</a>
</li>
<li class="file-stats">
<a href="#349369b0ff3f84575fe0d9513fb9bfcadb1b3612">
gatb-core/src/gatb/bcalm2/bglue_algo.hpp
</a>
</li>
<li class="file-stats">
<a href="#13ea1c05cb7d9ae8ed463fc61e80763d1ced17a4">
gatb-core/src/gatb/bcalm2/ograph.cpp
</a>
</li>
<li class="file-stats">
<a href="#e5f4aedaa4ba7e44690deaee2cca509fc116878c">
gatb-core/src/gatb/bcalm2/unionFind.hpp
</a>
</li>
<li class="file-stats">
<a href="#fa53c8abddac2ffbd797f8ad40c9772134223fed">
gatb-core/src/gatb/debruijn/impl/Graph.cpp
</a>
</li>
<li class="file-stats">
<a href="#47e6fff3caa93f4ef7cc54b7f08ec8ac25b21393">
gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp
</a>
</li>
<li class="file-stats">
<a href="#a8c2c0b48f4fe5a6db4d07e69030b1be23067359">
gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
</a>
</li>
<li class="file-stats">
<a href="#ed783240a52e80bd1c3a470d6646b3f6b3ab63e4">
gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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