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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/cwltool">Debian Med / cwltool</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/commit/988e7ed8c43eaa774ffef90c958c8ecdfe9acd41">988e7ed8</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-19T12:29:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">nodoc support, more nocheck support
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/commit/8990049bf0a4aef4854ab1bc32cfe698227e616a">8990049b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-19T12:29:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">AutoPkgTest: Skip udocker tests if running as root
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cwltool/commit/24c27c36baf07310bbe5d3dfc35a743ee4e5ad6d">24c27c36</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-19T12:35:48Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">upload to unstable
</pre>
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
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<li class="file-stats">
<a href="#aab2726ed6daf419caf178b1480b6d7da8a85af6">
debian/tests/run-tests
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/cwltool/compare/8f7d3aeccea377a2e64d66570b8e765b6cfd65b5...24c27c36baf07310bbe5d3dfc35a743ee4e5ad6d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">cwltool (1.0.20181217162649+dfsg-9) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Switch to python3-mypy-extensions</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * AutoPkgTest: Skip udocker tests if running as root</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Build profiles: nodoc support, more nocheck support</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 19 Jan 2019 04:35:36 -0800</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">cwltool (1.0.20181217162649+dfsg-8) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * debian/tests/control: udocker test needs python2</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/cwltool/compare/8f7d3aeccea377a2e64d66570b8e765b6cfd65b5...24c27c36baf07310bbe5d3dfc35a743ee4e5ad6d#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,19 +9,19 @@ Build-Depends: debhelper (>= 10),</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> python3-all,</span>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python3-setuptools,</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3-rdflib,</span>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> python3-rdflib-jsonld,</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> python3-rdflib-jsonld<span class="idiff left right"> <!nocheck></span>,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> python3-schema-salad (>= 3),</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> python3-shellescape,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> python3-html5lib,</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> python3-sparqlwrapper,</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> python3-keepalive,</span>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> python3-ruamel.yaml,</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> python3-pytest,</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> python3-pytest-xdist,</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> python3-pytest-runner,</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> python3-pytest-mock,</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> python3-mock,</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> python3-mypy,</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> python3-pytest<span class="idiff left right"> <!nocheck></span>,</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> python3-pytest-xdist<span class="idiff left right"> <!nocheck></span>,</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> python3-pytest-runner<span class="idiff left right"> <!nocheck></span>,</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> python3-pytest-mock<span class="idiff left right"> <!nocheck></span>,</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> python3-mock<span class="idiff left right"> <!nocheck></span>,</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> python3-mypy<span class="idiff left right">-extensions</span>,</span>
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25
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> python3-psutil,</span>
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26
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> python3-prov,</span>
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27
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> nodejs,</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/cwltool/compare/8f7d3aeccea377a2e64d66570b8e765b6cfd65b5...24c27c36baf07310bbe5d3dfc35a743ee4e5ad6d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,8 +15,12 @@ debian/cwltool.1: debian/rules debian/cwltool.help2man</td>
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> -o debian/cwltool.1 'python3 -m cwltool'</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> sed -i 's/__main__.py/cwltool/g' debian/cwltool.1</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">override_dh_installman: debian/cwltool.1</span>
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19
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> dh_installman</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">else</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">override_dh_installman:</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">endif</span>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">override_dh_auto_install:</span>
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> dh_auto_install</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,7 +28,7 @@ override_dh_auto_install:</td>
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24
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> find debian -name '*.json' -exec chmod a-x {} \;</span>
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25
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"></span>
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26
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_<span class="idiff left right">OPTION</span>S)))</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_<span class="idiff left right">PROFILE</span>S)))</span>
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dh_auto_install</span>
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29
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> PYBUILD_SYSTEM=custom \</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> PYBUILD_TEST_ARGS="cd {dir}; export PATH={destdir}/usr/bin:$$PATH ; \</span>
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<li id="aab2726ed6daf419caf178b1480b6d7da8a85af6">
<a href="https://salsa.debian.org/med-team/cwltool/compare/8f7d3aeccea377a2e64d66570b8e765b6cfd65b5...24c27c36baf07310bbe5d3dfc35a743ee4e5ad6d#aab2726ed6daf419caf178b1480b6d7da8a85af6"><strong>debian/tests/run-tests</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,5 +5,11 @@ if [ "$ADTTMP" = "" ] ; then</td>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: teal;">ADTTMP</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: navy;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: navy;">-test</span>.XXXXXX<span class="k" style="font-weight: 600;">)</span></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ADTTMP</span><span class="s2" style="color: #d14;">"</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="nv" style="color: teal;">SKIPS</span><span class="o" style="font-weight: 600;">=</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">id</span> <span class="nt" style="color: navy;">-u</span><span class="k" style="font-weight: 600;">)</span><span class="s2" style="color: #d14;">"</span> <span class="nt" style="color: navy;">-eq</span> 0 <span class="o" style="font-weight: 600;">]</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: teal;">SKIPS</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"-k not TestUdocker"</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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8
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell">py.test-3 <span class="nt" style="color: navy;">--numprocesses</span><span class="o" style="font-weight: 600;">=</span>auto <span class="nt" style="color: navy;">--dist</span><span class="o" style="font-weight: 600;">=</span>loadfile <span class="nt" style="color: navy;">--ignore</span> cwltool/schemas <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"> <span class="nt" style="color: navy;">--pyarg</span> cwltool</span></pre>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"> <span class="s2" style="color: #d14;"><span class="idiff left">"</span></span><span class="k" style="font-weight: 600;"><span class="idiff">${</span></span><span class="nv" style="color: teal;"><span class="idiff">SKIPS</span></span><span class="k" style="font-weight: 600;"><span class="idiff">}</span></span><span class="s2" style="color: #d14;"><span class="idiff">"</span></span><span class="idiff right"> </span><span class="nt" style="color: navy;">--pyarg</span> cwltool</span></pre>
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