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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/discosnp">Debian Med / discosnp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/commit/eb57ecaac0e856ef8bb3aa3ecb6bfa6880d3d7da">eb57ecaa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T20:13:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Force linking agains Debian packaged libs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/discosnp/commit/6b87aec1e8d587e750fd1dd25d419269fc66ed7c">6b87aec1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-22T21:22:04Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set dir for hdf5 library
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#617a6ef0dc813d1ce3f6df69d5f39b1fc3f73294">
debian/patches/use_debian_packaged_gatb-core.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/discosnp/compare/69d06fc5a043011814b8eba1ab7cc4d3dcc27c8c...6b87aec1e8d587e750fd1dd25d419269fc66ed7c#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Section: science</td>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 12~),</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> cmake,</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> libgatbcore-dev,</span>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> libgatbcore-dev<span class="idiff left right"> (>= 1.4.1+git20180206.6f8fce8~)</span>,</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libboost-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libhdf5-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> zlib1g-dev</span>
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</li>
<li id="617a6ef0dc813d1ce3f6df69d5f39b1fc3f73294">
<a href="https://salsa.debian.org/med-team/discosnp/compare/69d06fc5a043011814b8eba1ab7cc4d3dcc27c8c...6b87aec1e8d587e750fd1dd25d419269fc66ed7c#617a6ef0dc813d1ce3f6df69d5f39b1fc3f73294"><strong>debian/patches/use_debian_packaged_gatb-core.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,3 +15,64 @@ Description: Use cmake input file of Debian packaged gatb-core</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> ################################################################################</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> # THIRD PARTIES</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tools/QHC/CMakeLists.txt</span></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tools/QHC/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -22,7 +22,9 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> # we define which libraries to be linked with project binary</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-target_link_libraries (${PROJECT_NAME} ${gatb-core-libraries})</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+include(GNUInstallDirs)</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> </span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> </span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> # We copy the project binary to the 'bin' directory</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tools/kissnp2/CMakeLists.txt</span></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tools/kissnp2/CMakeLists.txt</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -22,8 +22,10 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> </span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> </span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> # we define which libraries to be linked with project binary</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-target_link_libraries (${PROJECT_NAME} ${gatb-core-libraries})</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+include(GNUInstallDirs)</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )</span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> </span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> </span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"> # We copy the project binary to the 'bin' directory</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)</span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff">\ No newline at end of file</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tools/kissreads2/CMakeLists.txt</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tools/kissreads2/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -22,8 +22,10 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> # we define which libraries to be linked with project binary</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-target_link_libraries (${PROJECT_NAME} ${gatb-core-libraries})</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+include(GNUInstallDirs)</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> </span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> </span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> # We copy the project binary to the 'bin' directory</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff">\ No newline at end of file</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tools/read_file_names/CMakeLists.txt</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tools/read_file_names/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -22,8 +22,10 @@ set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BIN</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> # we define which libraries to be linked with project binary</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-target_link_libraries (${PROJECT_NAME} ${gatb-core-libraries})</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+include(GNUInstallDirs)</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LINK_DIRECTORIES( /usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial )</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_link_libraries (${PROJECT_NAME} gatbcore hdf5 )</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"> # We copy the project binary to the 'bin' directory</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)</span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff">\ No newline at end of file</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)</span></span></pre>
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