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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/lambda-align2">Debian Med / lambda-align2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/lambda-align2/commit/570964e050d046a10799a672d91727b4ad253810">570964e0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-23T19:53:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix the tests again
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lambda-align2/commit/a72c43fcdb6e00bc9329bb0c320bc9941bc421c0">a72c43fc</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-23T19:53:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix manual pages
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/lambda-align2/commit/a1b53f1d2a41a07f70cc34efd976dd5d79954415">a1b53f1d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-01-23T19:55:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">document and release 2.0.0-4
</pre>
</li>
</ul>
<h4>11 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#128e6b7c0ec4eb5063d4ec367cb3a2f03acdb77f">
debian/db_nucl_fm.md5sums
</a>
</li>
<li class="file-stats">
<a href="#431b0cd4c7c7eb935a67db65bb3e2ba0caaaa779">
debian/db_nucl_sa.md5sums
</a>
</li>
<li class="file-stats">
<a href="#b008d2f2246e77f2c9e249647b723e2ba91d321e">
debian/db_prot_fm.md5sums
</a>
</li>
<li class="file-stats">
<a href="#a575e2170c340447262fb3fdff4f9f558ec02a0e">
debian/db_prot_sa.md5sums
</a>
</li>
<li class="file-stats">
<a href="#e95c431df1ac354ed3f94762765c07c78d72a936">
debian/db_trans_fm.md5sums
</a>
</li>
<li class="file-stats">
<a href="#8c168e84343051960948dfde23beaadfec84b412">
debian/db_trans_sa.md5sums
</a>
</li>
<li class="file-stats">
<a href="#73673540640f7d8526176753fdc6c4798fffebe1">
debian/patches/enable_tests
</a>
</li>
<li class="file-stats">
<a href="#23308da652bbee4b80b634b948f60303c284e7cf">
debian/patches/set-seqan-cmake-dir.patch
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</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
<li class="file-stats">
<a href="#aab2726ed6daf419caf178b1480b6d7da8a85af6">
debian/tests/run-tests
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">lambda-align2 (2.0.0-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Skip checking md5sums in the tests as they are not currently stable.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Post process the unix manual pages to remove errors with regards to the</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> subcommands.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 23 Jan 2019 11:54:46 -0800</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">lambda-align2 (2.0.0-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Fix 32-bit builds. Thanks to Michael R. Crusoe for the patch.</span>
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</li>
<li id="128e6b7c0ec4eb5063d4ec367cb3a2f03acdb77f">
<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#128e6b7c0ec4eb5063d4ec367cb3a2f03acdb77f"><strong>debian/db_nucl_fm.md5sums</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">MD5(db.fasta)= b58f6764fcdb216bbd0ad03e1d84b19b</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">MD5(fm.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">MD5(fm.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">MD5(fm.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">MD5(fm.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drp)= 42a7883cc86e97e4f8c9705a06991938</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drs)= ec7f7e7bb43742ce868145f71d37b53c</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">MD5(fm.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">MD5(fm.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv)= 92dccb84dd3d9be8db82d4ab163bf5ff</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv.sbl)= 97938e5c5896db0141d49249ff4b8737</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv.ubl)= fd4b38e94292e00251b9f39c47ee5710</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">MD5(fm.lambda/index.lf.pst)= ff1b62533bcb52a3772f890b5ac5656d</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">MD5(fm.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">MD5(fm.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">MD5(fm.lambda/index.sa.val)= bb20ec56bbf1c262b8ac223dc869af85</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">MD5(fm.lambda/index.txt.concat)= 82687a2ee200a06c72609bf095d8b15d</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">MD5(fm.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">MD5(fm.lambda/option:alph_original)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">MD5(fm.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">MD5(fm.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">MD5(fm.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">MD5(fm.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">MD5(fm.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">MD5(fm.lambda/option:genetic_code)= cfcd208495d565ef66e7dff9f98764da</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">MD5(fm.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.concat)= 922f5cce30c4a5d1cfab5b1d02d39039</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">MD5(fm.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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<td class="diff-line-num new old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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<li id="431b0cd4c7c7eb935a67db65bb3e2ba0caaaa779">
<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#431b0cd4c7c7eb935a67db65bb3e2ba0caaaa779"><strong>debian/db_nucl_sa.md5sums</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">MD5(db.fasta)= b58f6764fcdb216bbd0ad03e1d84b19b</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">MD5(sa.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">MD5(sa.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">MD5(sa.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">MD5(sa.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drp)= 42a7883cc86e97e4f8c9705a06991938</span>
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6
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drs)= ec7f7e7bb43742ce868145f71d37b53c</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">MD5(sa.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">MD5(sa.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv)= 659e96c6203a9d784cda846f73475c51</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv.sbl)= 97938e5c5896db0141d49249ff4b8737</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv.ubl)= fd4b38e94292e00251b9f39c47ee5710</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">MD5(sa.lambda/index.lf.pst)= ff1b62533bcb52a3772f890b5ac5656d</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">MD5(sa.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">MD5(sa.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">MD5(sa.lambda/index.sa.val)= bb20ec56bbf1c262b8ac223dc869af85</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">MD5(sa.lambda/index.txt.concat)= 82687a2ee200a06c72609bf095d8b15d</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">MD5(sa.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">MD5(sa.lambda/option:alph_original)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">MD5(sa.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">MD5(sa.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">MD5(sa.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">MD5(sa.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">MD5(sa.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">MD5(sa.lambda/option:genetic_code)= cfcd208495d565ef66e7dff9f98764da</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">MD5(sa.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
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16
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.concat)= 922f5cce30c4a5d1cfab5b1d02d39039</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">MD5(sa.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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<li id="b008d2f2246e77f2c9e249647b723e2ba91d321e">
<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#b008d2f2246e77f2c9e249647b723e2ba91d321e"><strong>debian/db_prot_fm.md5sums</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">MD5(db.fasta)= b01a08d07b955fcef5fa9ea94e1f25aa</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">MD5(fm.lambda/option:alph_translated)= 1151d962f7df03ce40c0f2126262deeb</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">MD5(fm.lambda/index.sa.len)= 8d3178082ade66084876d27bf13ee42f</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">MD5(fm.lambda/index.sa.ind)= cf713e9f2a896ce8d1d6e9bdd89b4649</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">MD5(fm.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drp)= 8f4318d9a2c7dcf419df38d6ff1ba05d</span>
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6
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drs)= 9e688c58a5487b8eaf69c9e1005ad0bf</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">MD5(fm.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">MD5(fm.lambda/option:alph_reduced)= dd23d4ca34a76600cedbab1b29d74025</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.concat)= 854f773792dc25c957e6355db7aa2abf</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv)= dd9b97ec644e1335a1d2dff66316ec0b</span>
</pre>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv.sbl)= 0cb8f0b411090455eeba5047ee758550</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv.ubl)= bbf7c6077962a7c28114dbd10be947cd</span>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">MD5(fm.lambda/index.lf.pst)= 4a7a878c6f1c84c5ccdc11e8103e2dda</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">MD5(fm.lambda/index.sa.ind)= cf713e9f2a896ce8d1d6e9bdd89b4649</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">MD5(fm.lambda/index.sa.len)= 8d3178082ade66084876d27bf13ee42f</span>
</pre>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">MD5(fm.lambda/index.sa.val)= b5683829a51776976811ae4634429de1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">MD5(fm.lambda/option:alph_original)= 1151d962f7df03ce40c0f2126262deeb</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.limits)= 43c3aceb573d64bb0bbacba680c320c7</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">MD5(fm.lambda/option:subj_seq_len_bits)= c74d97b01eae257e44aa9d5bade97baf</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.limits)= 5a0274cc69c7db878781a4b4adf6994d</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">MD5(fm.lambda/option:alph_reduced)= dd23d4ca34a76600cedbab1b29d74025</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">MD5(fm.lambda/option:alph_translated)= 1151d962f7df03ce40c0f2126262deeb</span>
</pre>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">MD5(fm.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">MD5(fm.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">MD5(fm.lambda/option:genetic_code)= c4ca4238a0b923820dcc509a6f75849b</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">MD5(fm.lambda/option:subj_seq_len_bits)= c74d97b01eae257e44aa9d5bade97baf</span>
</pre>
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15
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.concat)= 1e946a893d19945bffe18747d76ee573</span>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.limits)= 43c3aceb573d64bb0bbacba680c320c7</span>
</pre>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.concat)= 854f773792dc25c957e6355db7aa2abf</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.limits)= 5a0274cc69c7db878781a4b4adf6994d</span></pre>
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<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#a575e2170c340447262fb3fdff4f9f558ec02a0e"><strong>debian/db_prot_sa.md5sums</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">MD5(db.fasta)= b01a08d07b955fcef5fa9ea94e1f25aa</span>
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<td class="diff-line-num old old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">MD5(sa.lambda/option:alph_translated)= 1151d962f7df03ce40c0f2126262deeb</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">MD5(sa.lambda/index.sa.len)= 8d3178082ade66084876d27bf13ee42f</span>
</pre>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">MD5(sa.lambda/index.sa.ind)= cf713e9f2a896ce8d1d6e9bdd89b4649</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
5
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<td class="diff-line-num new_line old" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">MD5(sa.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drp)= 8f4318d9a2c7dcf419df38d6ff1ba05d</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drs)= 9e688c58a5487b8eaf69c9e1005ad0bf</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">MD5(sa.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">MD5(sa.lambda/option:alph_reduced)= dd23d4ca34a76600cedbab1b29d74025</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.concat)= 854f773792dc25c957e6355db7aa2abf</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv)= dd9b97ec644e1335a1d2dff66316ec0b</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv.sbl)= 0cb8f0b411090455eeba5047ee758550</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv.ubl)= bbf7c6077962a7c28114dbd10be947cd</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">MD5(sa.lambda/index.lf.pst)= 4a7a878c6f1c84c5ccdc11e8103e2dda</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">MD5(sa.lambda/index.sa.ind)= cf713e9f2a896ce8d1d6e9bdd89b4649</span>
</pre>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">MD5(sa.lambda/index.sa.len)= 8d3178082ade66084876d27bf13ee42f</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">MD5(sa.lambda/index.sa.val)= b5683829a51776976811ae4634429de1</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">MD5(sa.lambda/option:alph_original)= 1151d962f7df03ce40c0f2126262deeb</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.limits)= 43c3aceb573d64bb0bbacba680c320c7</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<td class="diff-line-num new_line old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">MD5(sa.lambda/option:subj_seq_len_bits)= c74d97b01eae257e44aa9d5bade97baf</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<td class="diff-line-num new_line old" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.limits)= 5a0274cc69c7db878781a4b4adf6994d</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">MD5(sa.lambda/option:alph_reduced)= dd23d4ca34a76600cedbab1b29d74025</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">MD5(sa.lambda/option:alph_translated)= 1151d962f7df03ce40c0f2126262deeb</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">MD5(sa.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">MD5(sa.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">MD5(sa.lambda/option:genetic_code)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">MD5(sa.lambda/option:subj_seq_len_bits)= c74d97b01eae257e44aa9d5bade97baf</span>
</pre>
</td>
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15
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.concat)= 1e946a893d19945bffe18747d76ee573</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.limits)= 43c3aceb573d64bb0bbacba680c320c7</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.concat)= 854f773792dc25c957e6355db7aa2abf</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.limits)= 5a0274cc69c7db878781a4b4adf6994d</span></pre>
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<li id="e95c431df1ac354ed3f94762765c07c78d72a936">
<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#e95c431df1ac354ed3f94762765c07c78d72a936"><strong>debian/db_trans_fm.md5sums</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">MD5(db.fasta)= b58f6764fcdb216bbd0ad03e1d84b19b</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">MD5(fm.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">MD5(fm.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">MD5(fm.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">MD5(fm.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drp)= 42a7883cc86e97e4f8c9705a06991938</span>
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6
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drs)= ec7f7e7bb43742ce868145f71d37b53c</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">MD5(fm.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">MD5(fm.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv)= 7e2abc90ff6c6a055378513a45f662ad</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv.sbl)= 97938e5c5896db0141d49249ff4b8737</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">MD5(fm.lambda/index.lf.drv.ubl)= fd4b38e94292e00251b9f39c47ee5710</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">MD5(fm.lambda/index.lf.pst)= ff1b62533bcb52a3772f890b5ac5656d</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">MD5(fm.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">MD5(fm.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">MD5(fm.lambda/index.sa.val)= bb20ec56bbf1c262b8ac223dc869af85</span>
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10
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">MD5(fm.lambda/index.txt.concat)= 82687a2ee200a06c72609bf095d8b15d</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">MD5(fm.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">MD5(fm.lambda/option:alph_original)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">MD5(fm.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">MD5(fm.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">MD5(fm.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">MD5(fm.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">MD5(fm.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">MD5(fm.lambda/option:genetic_code)= cfcd208495d565ef66e7dff9f98764da</span>
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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">MD5(fm.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
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16
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.concat)= 922f5cce30c4a5d1cfab5b1d02d39039</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">MD5(fm.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">MD5(fm.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">MD5(fm.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#8c168e84343051960948dfde23beaadfec84b412"><strong>debian/db_trans_sa.md5sums</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">MD5(db.fasta)= b58f6764fcdb216bbd0ad03e1d84b19b</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">MD5(sa.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">MD5(sa.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">MD5(sa.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">MD5(sa.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drp)= 42a7883cc86e97e4f8c9705a06991938</span>
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6
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drs)= ec7f7e7bb43742ce868145f71d37b53c</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">MD5(sa.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">MD5(sa.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
</td>
<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv)= 95e0ba2cb7a95389f2a3ea0a63919672</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv.sbl)= 97938e5c5896db0141d49249ff4b8737</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">MD5(sa.lambda/index.lf.drv.ubl)= fd4b38e94292e00251b9f39c47ee5710</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">MD5(sa.lambda/index.lf.pst)= ff1b62533bcb52a3772f890b5ac5656d</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">MD5(sa.lambda/index.sa.ind)= 4b69f40b67e86836a5d550c8235863eb</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">MD5(sa.lambda/index.sa.len)= 7e9ddcbeb0dbe4cb0c21e8ed0a96198d</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">MD5(sa.lambda/index.sa.val)= bb20ec56bbf1c262b8ac223dc869af85</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
</td>
<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">MD5(sa.lambda/index.txt.concat)= 82687a2ee200a06c72609bf095d8b15d</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">MD5(sa.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">MD5(sa.lambda/option:alph_original)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">MD5(sa.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">MD5(sa.lambda/option:alph_reduced)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">MD5(sa.lambda/option:alph_translated)= 01ef0afac8c7cfc866cf812c7bb68596</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">MD5(sa.lambda/option:db_index_type)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">MD5(sa.lambda/option:generation)= c4ca4238a0b923820dcc509a6f75849b</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">MD5(sa.lambda/option:genetic_code)= cfcd208495d565ef66e7dff9f98764da</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">MD5(sa.lambda/option:subj_seq_len_bits)= 6364d3f0f495b6ab9dcf8d3b5c6e0b01</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.concat)= 922f5cce30c4a5d1cfab5b1d02d39039</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">MD5(sa.lambda/index.txt.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">MD5(sa.lambda/seq_ids.limits)= 89d74e26e6e06be6cd029d2071e5522e</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.concat)= 25d9d9b6f49e2dbf4ad50f5e90034f32</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">MD5(sa.lambda/translated_seqs.limits)= ec3b17c879edb71de532df257e5553ea</span></pre>
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<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#73673540640f7d8526176753fdc6c4798fffebe1"><strong>debian/patches/enable_tests</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">From: Michael R. Crusoe <michael.crusoe@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Subject: Enable and update tests for lambda2</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Skip checking the md5sums as they are not currently stable</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">Only the first 10 tests pass with this patch</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- lambda-align.orig/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ lambda-align/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- lambda-align<span class="idiff left right">2</span>.orig/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ lambda-align<span class="idiff left right">2</span>/CMakeLists.txt</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -60,5 +60,5 @@</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> # Add Tests</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> # ----------------------------------------------------------------------------</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,8 +15,8 @@ Only the first 10 tests pass with this patch</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-# add_subdirectory(tests)</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+message ("\n${ColourBold}Setting up unit tests${ColourReset}")</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+add_subdirectory(tests)</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- lambda-align.orig/tests/maintests.sh</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ lambda-align/tests/maintests.sh</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- lambda-align<span class="idiff left right">2</span>.orig/tests/maintests.sh</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ lambda-align<span class="idiff left right">2</span>/tests/maintests.sh</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,5 +1,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> #!/bin/sh</span>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,7 +50,7 @@ Only the first 10 tests pass with this patch</td>
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48
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="diff"> SALPH=trans</span>
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49
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51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="diff"> QALPHIN=nucl</span>
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50
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52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="diff"> SALPHIN=nucl</span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -53,1<span class="idiff left right">0 +61,10</span> @@</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -53,1<span class="idiff left right">6 +61,18</span> @@</span></span>
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54
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="diff"> gunzip < "${SRCDIR}/tests/db_${SALPHIN}.fasta.gz" > db.fasta</span>
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53
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55
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"> [ $? -eq 0 ] || errorout "Could not unzip database file"</span>
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54
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56
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -57,11 +59,22 @@ Only the first 10 tests pass with this patch</td>
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57
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59
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="diff"> [ $? -eq 0 ] || errorout "Could not run the indexer"</span>
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58
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="diff"> </span>
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59
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61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-openssl md5 * > md5sums</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+openssl md5 $(find * -type f<span class="idiff left right">) > </span>md5sums</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+openssl md5 $(find * -type f<span class="idiff left right"> | sort) > db_${SALPH}_${DI}.</span>md5sums</span></span>
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61
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="diff"> [ $? -eq 0 ] || errorout "Could not run md5 or md5sums"</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#openssl md5 $(find * -type f | sort | grep -v md5sums) > ${SRCDIR}/tests/db_${SALPH}_${DI}.md5sums</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#gzip -f ${SRCDIR}/tests/db_${SALPH}_${DI}.md5sums</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> </span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-gunzip < "${SRCDIR}/tests/db_${SALPH}_${DI}.md5sums.gz" > md5sums.orig</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-[ $? -eq 0 ] || errorout "Could not unzip md5sums.orig"</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+gunzip < "${SRCDIR}/tests/db_${SALPH}_${DI}.md5sums.gz" > db_${SALPH}_${DI}.md5sums.orig</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+[ $? -eq 0 ] || errorout "Could not unzip tests/db_${SALPH}_${DI}.md5sums.gz"</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-[ "$(cat md5sums)" = "$(cat md5sums.orig)" ] || errorout "$(diff -u md5sums md5sums.orig)"</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#[ "$(cat db_${SALPH}_${DI}.md5sums)" = "$(cat db_${SALPH}_${DI}.md5sums.orig)" ] || errorout "$(diff -u db_${SALPH}_${DI}.md5sums db_${SALPH}_${DI}.md5sums.orig)"</span></span>
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62
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="diff"> gunzip < "${SRCDIR}/tests/db_${SALPH}_${DI}.md5sums.gz" > md5sums.orig</span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -73,7 +81,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"> ## INDEXER tests end here</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"> if [ "$MODE" = "MKINDEX" ]; then</span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -73,7 +83,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="diff"> gunzip < "${SRCDIR}/tests/queries_${QALPHIN}.fasta.gz" > queries.fasta</span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="diff"> [ $? -eq 0 ] || errorout "Could not unzip queries.fasta"</span>
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="diff"> </span>
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<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#23308da652bbee4b80b634b948f60303c284e7cf"><strong>debian/patches/set-seqan-cmake-dir.patch</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">Description: set SeqAn_DIR to find CMake modules</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Author: Sascha Steinbiss <satta@debian.org></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- <span class="idiff left right">a</span>/src/CMakeLists.txt</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">b</span>/src/CMakeLists.txt</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2<span class="idiff left right">2,6 +22</span>,8 @@</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- <span class="idiff left right">lambda-align2.orig</span>/src/CMakeLists.txt</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ <span class="idiff left right">lambda-align2</span>/src/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2<span class="idiff left right">5,6 +25</span>,8 @@</span></span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> # Dependencies (continued)</span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> # ----------------------------------------------------------------------------</span>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> </span>
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<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,6 +17,17 @@ endif</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> dh $@ --builddirectory=build</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">override_dh_installman:</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> sed -i 's/LAMBDA2 MKINDEXN/LAMBDA2_MKINDEXN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> sed -i 's/^lambda2 mkindexn /lambda2_mkindexn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> sed -i 's/LAMBDA2 MKINDEXP/LAMBDA2_MKINDEXP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> sed -i 's/^lambda2 mkindexp /lambda2_mkindexp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> sed -i 's/LAMBDA2 SEARCHN/LAMBDA2_SEARCHN/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> sed -i 's/^lambda2 searchn /lambda2_searchn /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> dh_installman</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> find debian -name "LICENSE*.rst" -delete</span>
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<li id="aab2726ed6daf419caf178b1480b6d7da8a85af6">
<a href="https://salsa.debian.org/med-team/lambda-align2/compare/5cad49b6fb768b8168f3d4797b0cfa71ccf58c82...a1b53f1d2a41a07f70cc34efd976dd5d79954415#aab2726ed6daf419caf178b1480b6d7da8a85af6"><strong>debian/tests/run-tests</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,9 +9,11 @@ cd test_build</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="shell">cmake <span class="nt" style="color: navy;">-DCMAKE_VERBOSE_MAKEFILE</span><span class="o" style="font-weight: 600;">=</span>ON <span class="nt" style="color: navy;">-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY</span><span class="o" style="font-weight: 600;">=</span>ON <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"> <span class="nt" style="color: navy;">-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY</span><span class="o" style="font-weight: 600;">=</span>ON ../</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>binary <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">$(</span>dpkg <span class="nt" style="color: navy;">-L</span> lambda-align2 | <span class="nb" style="color: #0086b3;">grep </span>bin/<span class="k" style="font-weight: 600;">)</span><span class="p">;</span> <span class="k" style="font-weight: 600;">do </span><span class="nb" style="color: #0086b3;">ln</span> <span class="nt" style="color: navy;">-s</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">binary</span><span class="k" style="font-weight: 600;">}</span> bin/<span class="p">;</span> <span class="k" style="font-weight: 600;">done</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: navy;">-p</span> libexec</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>binary <span class="k" style="font-weight: 600;">in</span> <span class="k" style="font-weight: 600;">$(</span>dpkg <span class="nt" style="color: navy;">-L</span> lambda-align2 | <span class="nb" style="color: #0086b3;">grep </span>libexec/<span class="k" style="font-weight: 600;">)</span><span class="p">;</span> <span class="k" style="font-weight: 600;">do </span><span class="nb" style="color: #0086b3;">ln</span> <span class="nt" style="color: navy;">-s</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">binary</span><span class="k" style="font-weight: 600;">}</span> libexec/<span class="p">;</span> <span class="k" style="font-weight: 600;">done</span></span>
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12
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd </span>tests</span>
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13
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> +e</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell">ctest <span class="nt" style="color: navy;">--parallel</span> <span class="k" style="font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">nproc</span><span class="k" style="font-weight: 600;">)</span> <span class="nt" style="color: navy;">-I</span> 1,10 <span class="p">;</span> <span class="nv" style="color: teal;">RESULT</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$?</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell">ctest <span class="nt" style="color: navy;">--parallel</span> <span class="k" style="font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">nproc</span><span class="k" style="font-weight: 600;">)</span> <span class="nt" style="color: navy;">-I</span> 1,10 <span class="nt" style="color: navy;"><span class="idiff left right">--output-on-failure</span></span><span class="p">;</span> <span class="nv" style="color: teal;">RESULT</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$?</span></span>
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15
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"><span class="k" style="font-weight: 600;">if </span><span class="nb" style="color: #0086b3;">ls </span>tests/<span class="k" style="font-weight: 600;">*</span>~ 1> /dev/null 2>&1<span class="p">;</span> <span class="k" style="font-weight: 600;">then</span> <span class="se" style="color: #d14;">\</span></span>
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16
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"> <span class="k" style="font-weight: 600;">for </span>backup <span class="k" style="font-weight: 600;">in </span>tests/<span class="k" style="font-weight: 600;">*</span>~<span class="p">;</span> <span class="k" style="font-weight: 600;">do </span><span class="nb" style="color: #0086b3;">mv</span> <span class="nv" style="color: teal;">$$</span><span class="o" style="font-weight: 600;">{</span>backup<span class="o" style="font-weight: 600;">}</span> <span class="nv" style="color: teal;">$$</span><span class="o" style="font-weight: 600;">{</span>backup%<span class="se" style="color: #d14;">\~</span><span class="o" style="font-weight: 600;">}</span><span class="p">;</span> <span class="k" style="font-weight: 600;">done</span><span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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17
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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