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GitLab

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<h3>

Andreas Tille pushed to branch master

at <a href="https://salsa.debian.org/med-team/ecopcr">Debian Med / ecopcr</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/eb2822c1bff3e23cba6818c442b06d8d6fb0225c">eb2822c1</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:16:07Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup watch file

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/b37f9f805e4d928bf0bd7257d95dd7493130edff">b37f9f80</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:16:20Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.1+dfsg</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/dfcddfc3bc804ae555da8b9069d215e577fe64a2">dfcddfc3</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:16:49Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.1+dfsg'

Update to upstream version '1.0.1+dfsg'

with Debian dir 47eca154b7418a8f5ec418c853fe0518d6ef4191</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/61b5ec58dbe7e1460c3443c65bef77f0560b4ad4">61b5ec58</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:17:13Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/ef90c98b6ccf8d919239a09963b8bfde18ded551">ef90c98b</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:17:43Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 12

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/a246b7eafbd63b89028e4a2460b718d0b391920f">a246b7ea</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:17:54Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.3.0

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/9cd3c8ffa73fd5f82c9ac63f2729dd46c9f01831">9cd3c8ff</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:17:55Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/copyright

</pre>

</li>

<li>

<strong><a href="https://salsa.debian.org/med-team/ecopcr/commit/bd73551d614bdf9269415babbff8624ce4e914c2">bd73551d</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2019-01-26T10:21:04Z</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable

</pre>

</li>

</ul>

<h4>7 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">

VERSION

</a>

</li>

<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

</a>

</li>

<li class="file-stats">

<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">

debian/compat

</a>

</li>

<li class="file-stats">

<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

debian/control

</a>

</li>

<li class="file-stats">

<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">

debian/copyright

</a>

</li>

<li class="file-stats">

<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">

debian/watch

</a>

</li>

<li class="file-stats">

<a href="#1184bfcdd3d88f1f070133db2740bbea66bb5a3a">

src/ecopcr.c

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="b33892fbddeffc3368077b4904ad0b3d562a7312">

<a href="https://salsa.debian.org/med-team/ecopcr/compare/a73fda511697d5cf863290d134d0239c0878bff5...bd73551d614bdf9269415babbff8624ce4e914c2#b33892fbddeffc3368077b4904ad0b3d562a7312"><strong>VERSION</strong></a>

<hr>

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1

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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">0.8</span>.0</span></pre>

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<td class="diff-line-num new old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">1.0</span>.0</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/ecopcr/compare/a73fda511697d5cf863290d134d0239c0878bff5...bd73551d614bdf9269415babbff8624ce4e914c2#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ecopcr (1.0.1+dfsg-1) unstable; urgency=medium</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

2

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">  * New upstream version</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">  * Cleanup watch file</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">  * debhelper 12</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">  * Standards-Version: 4.3.0</span>

</pre>

</td>

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<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

7

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">  * Remove trailing whitespace in debian/copyright</span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

8

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

9

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Sat, 26 Jan 2019 11:17:55 +0100</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

10

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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

11

</td>

<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">ecopcr (1.0.0+dfsg-1) unstable; urgency=medium</span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2

</td>

<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

12

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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

</td>

<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

13

</td>

<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">  * New upstream version</span>

</pre>

</td>

</tr>

</table>

<br>

</li>

<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">

<a href="https://salsa.debian.org/med-team/ecopcr/compare/a73fda511697d5cf863290d134d0239c0878bff5...bd73551d614bdf9269415babbff8624ce4e914c2#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>

<hr>

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1

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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>

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1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">2</span></span></pre>

</td>

</tr>

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<br>

</li>

<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

<a href="https://salsa.debian.org/med-team/ecopcr/compare/a73fda511697d5cf863290d134d0239c0878bff5...bd73551d614bdf9269415babbff8624ce4e914c2#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,11 +3,11 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>

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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>

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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1</span>~),</span>

</pre>

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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">2</span>~),</span>

</pre>

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">               dh-python,</span>

</pre>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">               python3,</span>

</pre>

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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">               zlib1g-dev</span>

</pre>

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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2</span>.0</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3</span>.0</span>

</pre>

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/ecopcr</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/ecopcr.git</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Homepage: https://git.metabarcoding.org/obitools/ecopcr/wikis/home</span>

</pre>

</td>

</tr>

</table>

<br>

</li>

<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">

<a href="https://salsa.debian.org/med-team/ecopcr/compare/a73fda511697d5cf863290d134d0239c0878bff5...bd73551d614bdf9269415babbff8624ce4e914c2#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -146,7 +146,7 @@ License: CeCILL_V2</td>

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<td class="diff-line-num old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> The purpose of the Agreement is the grant by the Licensor to the</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> Licensee of a non-exclusive, transferable and worldwide license for the</span>

</pre>

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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> Software as set forth in Article 5 hereinafter for the whole term of the</span>

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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> protection granted by the rights over said Software.<span class="idiff left right"> </span></span>

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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> protection granted by the rights over said Software.</span>

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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> .</span>

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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> .</span>

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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext">     Article 3 - ACCEPTANCE</span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -413,7 +413,7 @@ License: CeCILL_V2</td>

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<pre style="margin: 0;"> <span id="LC413" class="line" lang="plaintext"> .</span>

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<pre style="margin: 0;"> <span id="LC414" class="line" lang="plaintext"> 9.3 The Licensee acknowledges that the Software is supplied "as is" by</span>

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<pre style="margin: 0;"> <span id="LC415" class="line" lang="plaintext"> the Licensor without any other express or tacit warranty, other than</span>

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<pre style="margin: 0;">-<span id="LC416" class="line" lang="plaintext"> that provided for in Article 9.2 and, in particular, without any warranty<span class="idiff left right"> </span></span>

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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext"> that provided for in Article 9.2 and, in particular, without any warranty</span>

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<pre style="margin: 0;"> <span id="LC417" class="line" lang="plaintext"> as to its commercial value, its secured, safe, innovative or relevant</span>

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<pre style="margin: 0;"> <span id="LC418" class="line" lang="plaintext"> nature.</span>

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<pre style="margin: 0;"> <span id="LC419" class="line" lang="plaintext"> .</span>

</pre>

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<br>

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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">

<a href="https://salsa.debian.org/med-team/ecopcr/compare/a73fda511697d5cf863290d134d0239c0878bff5...bd73551d614bdf9269415babbff8624ce4e914c2#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>

<hr>

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1

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1

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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>

</pre>

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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">opts="<span class="idiff left right">filenamemangle=s/.*\.tar\.gz\?ref=v?(\d\S*)/<project>-$1\.tar\.gz/g,</span>repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">  https://git.metabarcoding.org/obitools/ecopcr/tags .*/ecopcr_v@ANY_VERSION@/archive<span class="idiff left right">@ARCHIVE_EXT@</span></span></pre>

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>

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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">  https://git.metabarcoding.org/obitools/ecopcr/tags .*/ecopcr_v@ANY_VERSION@/archive<span class="idiff left right">\.tar.gz</span></span></pre>

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<br>

</li>

<li id="1184bfcdd3d88f1f070133db2740bbea66bb5a3a">

<a href="https://salsa.debian.org/med-team/ecopcr/compare/a73fda511697d5cf863290d134d0239c0878bff5...bd73551d614bdf9269415babbff8624ce4e914c2#1184bfcdd3d88f1f070133db2740bbea66bb5a3a"><strong>src/ecopcr.c</strong></a>

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <getopt.h></span></span>

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="c"></span>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="c"></span>

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "1.0.<span class="idiff left right">0</span>"</span></span>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "1.0.<span class="idiff left right">1</span>"</span></span>

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="c"></span>

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="c"></span>

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* ----------------------------------------------- */</span></span>

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<pre style="margin: 0;"> <span id="LC610" class="line" lang="c">                                                                    <span class="p">{</span></span>

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<pre style="margin: 0;"> <span id="LC611" class="line" lang="c">                                                                            <span class="n" style="color: #333;">posj</span><span class="o" style="font-weight: 600;">+=</span><span class="n" style="color: #333;">o2c</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC612" class="line" lang="c">                                                                            <span class="c1" style="color: #998; font-style: italic;">// printf("coucou %d %d %d\n",posi,posj,apatseq->seqlen);</span></span>

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<pre style="margin: 0;">-<span id="LC613" class="line" lang="c">                                                                            <span class="n" style="color: #333;">errj</span> <span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff right">=</span></span><span class="n" style="color: #333;">apatseq</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">hiterr</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">val</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">];</span></span>

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<pre style="margin: 0;">+<span id="LC613" class="line" lang="c">                                                                            <span class="n" style="color: #333;">errj</span> <span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">apatseq</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">hiterr</span><span class="p">[</span><span class="mi" style="color: #099;">1</span><span class="p">]</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">val</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">];</span></span>

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<pre style="margin: 0;"> <span id="LC614" class="line" lang="c">                                                                            <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>

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<pre style="margin: 0;"> <span id="LC615" class="line" lang="c">                                                                            <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">posi</span><span class="p">)</span></span>

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<pre style="margin: 0;"> <span id="LC616" class="line" lang="c">                                                                                    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">posi</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o1</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o2</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span></span>

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617

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<pre style="margin: 0;"> <span id="LC617" class="line" lang="c">                                                                            <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">posi</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

618

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<td class="diff-line-num new_line old" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC618" class="line" lang="c">                                                                                    <span class="c1" style="color: #998; font-style: italic;">//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen;   // TODO</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

619

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<td class="diff-line-num new_line old" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC619" class="line" lang="c">                                                                                    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posi</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o1</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o2</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="620" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

618

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<pre style="margin: 0;">+<span id="LC618" class="line" lang="c">                                                                                    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">apatseq</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">seqlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">posi</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o1</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o2</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="620" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

620

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<td class="diff-line-num new_line" data-linenumber="619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

619

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<pre style="margin: 0;"> <span id="LC619" class="line" lang="c">                                                                            <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">length</span><span class="o" style="font-weight: 600;">></span><span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span>      <span class="c1" style="color: #998; font-style: italic;">// For when primers touch or overlap</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

621

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620

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<pre style="margin: 0;"> <span id="LC620" class="line" lang="c">                                                                                    <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">lmin</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">lmin</span><span class="p">))</span> <span class="o" style="font-weight: 600;">&&</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="622" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

622

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<td class="diff-line-num new_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

621

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<pre style="margin: 0;"> <span id="LC621" class="line" lang="c">                                                                                    <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">lmax</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">lmax</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="668" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="667" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -668,11 +667,9 @@ int main(int argc, char **argv)</td>

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<td class="diff-line-num old_line" data-linenumber="668" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

668

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<td class="diff-line-num new_line" data-linenumber="667" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

667

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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC667" class="line" lang="c"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="669" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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668

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<pre style="margin: 0;"> <span id="LC668" class="line" lang="c">                                                                            <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="669" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

669

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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC669" class="line" lang="c">                                                                            <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">posi</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="671" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

671

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<td class="diff-line-num new_line old" data-linenumber="670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC671" class="line" lang="c">                                                                                    <span class="c1" style="color: #998; font-style: italic;">//length = posj - posi + 1  - o2->patlen - o1->patlen; /* - o1->patlen : deleted by <EC> (prior to the OBITools3) */ TODO ????</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

672

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<td class="diff-line-num new_line old" data-linenumber="670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC672" class="line" lang="c">                                                                                    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">posi</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o2</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o1</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

670

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<pre style="margin: 0;">+<span id="LC670" class="line" lang="c">                                                                                    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">posi</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span>  <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o2</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o1</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span> <span class="cm" style="color: #998; font-style: italic;">/* - o1->patlen : deleted by <EC> (prior to the OBITools3) */</span></span>

</pre>

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673

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<td class="diff-line-num new_line" data-linenumber="671" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

671

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<pre style="margin: 0;"> <span id="LC671" class="line" lang="c">                                                                            <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">posi</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="674" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

674

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<td class="diff-line-num new_line old" data-linenumber="672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC674" class="line" lang="c">                                                                                    <span class="c1" style="color: #998; font-style: italic;">//length = posj + apatseq->seqlen - posi - o1->patlen - o2->patlen; TODO ????</span></span>

</pre>

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675

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<td class="diff-line-num new_line old" data-linenumber="672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC675" class="line" lang="c">                                                                                    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posi</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o2</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o1</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="676" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC672" class="line" lang="c">                                                                                    <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posj</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">apatseq</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">seqlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">posi</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o1</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">o2</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">patlen</span><span class="p">;</span></span>

</pre>

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676

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<pre style="margin: 0;"> <span id="LC673" class="line" lang="c">                                                                            <span class="k" style="font-weight: 600;">if</span> <span class="p">((</span><span class="n" style="color: #333;">length</span><span class="o" style="font-weight: 600;">></span><span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="o" style="font-weight: 600;">&&</span>      <span class="c1" style="color: #998; font-style: italic;">// For when primers touch or overlap</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="677" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC674" class="line" lang="c">                                                                                    <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">lmin</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">lmin</span><span class="p">))</span> <span class="o" style="font-weight: 600;">&&</span></span>

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<td class="diff-line-num old_line" data-linenumber="678" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC675" class="line" lang="c">                                                                                    <span class="p">(</span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">lmax</span> <span class="o" style="font-weight: 600;">||</span> <span class="p">(</span><span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">lmax</span><span class="p">)))</span></span>

</pre>

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