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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ugene">Debian Med / ugene</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/commit/f3b185da79c4f5417b4997b761c97b5e69244894">f3b185da</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-27T15:34:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ugene/commit/3f868ce36dfc0f67461765453cd04526e218a956">3f868ce3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-28T11:51:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use Debian packaged libs
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#9997bd5776589a9a7f288226bb83a6fda9b702f5">
<span class="new-file">
+
debian/patches/debian_packaged_libs.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#d185b62d54557160e7ddc743405a9cec66dcaa96">
debian/patches/use_debian_sqlite.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/ugene/compare/b567a5b51bd4f54be8098f53b16122b4400ef0cb...3f868ce36dfc0f67461765453cd04526e218a956#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,6 +14,7 @@ Build-Depends: qtbase5-dev,</td>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> qtscript5-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> qt5-qmake,</span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> qtchooser,</span>
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<td class="diff-line-num new old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> qttools5-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> zlib1g-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> debhelper (>= 12~),</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> libxtst-dev,</span>
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<li id="9997bd5776589a9a7f288226bb83a6fda9b702f5">
<a href="https://salsa.debian.org/med-team/ugene/compare/b567a5b51bd4f54be8098f53b16122b4400ef0cb...3f868ce36dfc0f67461765453cd04526e218a956#9997bd5776589a9a7f288226bb83a6fda9b702f5"><strong>debian/patches/debian_packaged_libs.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -35,8 +35,6 @@ set(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> # 3rd party libs</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> add_subdirectory(src/libs_3rdparty/breakpad)</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> add_subdirectory(src/libs_3rdparty/samtools)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-add_subdirectory(src/libs_3rdparty/sqlite3)</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-add_subdirectory(src/libs_3rdparty/zlib)</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> # Core libs</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> add_subdirectory(src/corelibs/U2Core)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bam.h</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bam.h</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -61,7 +61,7 @@ typedef BGZF *bamFile;</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir)</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> #else</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> #define BAM_TRUE_OFFSET</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> typedef gzFile bamFile;</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> #define bam_open(fn, mode) gzopen(fn, mode)</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> #define bam_dopen(fd, mode) gzdopen(fd, mode)</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bam_rmdup.c</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bam_rmdup.c</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,7 +1,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> #include <stdlib.h></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> #include <string.h></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> #include <stdio.h></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> #include <unistd.h></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> #include "sam.h"</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bgzf.h</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bgzf.h</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -26,7 +26,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> #include <stdint.h></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> #include <stdio.h></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> #ifdef _USE_KNETFILE</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"> #include "knetfile.h"</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> #endif</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/phase.c</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/phase.c</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -3,7 +3,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> #include <unistd.h></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> #include <stdint.h></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> #include <math.h></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> #include "bam.h"</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> #include "errmod.h"</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/razf.h</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/razf.h</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -35,7 +35,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"> #include <stdint.h></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"> #include <stdio.h></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"> </span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"> #ifdef _USE_KNETFILE</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> #include "knetfile.h"</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/corelibs/U2Core/src/io/ZlibAdapter.cpp</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/corelibs/U2Core/src/io/ZlibAdapter.cpp</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -27,7 +27,7 @@</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"> </span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> #include "ZlibAdapter.h"</span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"> </span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"> </span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"> #include <assert.h></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"> </span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bam_import.c</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bam_import.c</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,4 +1,4 @@</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"> #include <stdio.h></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"> #include <ctype.h></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"> #include <string.h></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bcftools/bcf.h</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bcftools/bcf.h</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -31,7 +31,7 @@</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"> #define BCF_VERSION "0.1.17-dev (r973:277)"</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"> </span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"> #include <stdint.h></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"> </span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"> #ifndef BCF_LITE</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"> #include "bgzf.h"</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bcftools/call1.c</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bcftools/call1.c</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,7 +1,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"> #include <unistd.h></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="diff"> #include <stdlib.h></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"> #include <math.h></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="diff"> #include <errno.h></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="diff"> #include "bcf.h"</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"> #include "prob1.h"</span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bcftools/vcf.c</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bcftools/vcf.c</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,4 +1,4 @@</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"> #include <stdlib.h></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"> #include <stdio.h></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> #include <string.h></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/libs_3rdparty/samtools/src/samtools/bedidx.c</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/libs_3rdparty/samtools/src/samtools/bedidx.c</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2,7 +2,7 @@</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"> #include <stdint.h></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="diff"> #include <string.h></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="diff"> #include <stdio.h></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="diff"> </span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="diff"> #ifdef _WIN32</span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="diff"> #define drand48() ((double)rand() / RAND_MAX)</span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/plugins/biostruct3d_view/src/gl2ps/gl2ps.cpp</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/plugins/biostruct3d_view/src/gl2ps/gl2ps.cpp</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -72,7 +72,7 @@</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="diff"> #endif</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="diff"> </span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="diff"> #if defined(GL2PS_HAVE_ZLIB)</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="diff"> #endif</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="diff"> </span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="diff"> #if defined(GL2PS_HAVE_LIBPNG)</span>
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<td class="diff-line-num new new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/plugins/dbi_bam/src/BAMFormat.cpp</span></span>
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<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/plugins/dbi_bam/src/BAMFormat.cpp</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -19,7 +19,7 @@</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="diff"> * MA 02110-1301, USA.</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="diff"> */</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="diff"> </span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="diff"> </span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="diff"> #include <U2Core/DocumentModel.h></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="diff"> #include <U2Core/L10n.h></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/plugins/dbi_bam/src/BgzfReader.h</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/plugins/dbi_bam/src/BgzfReader.h</span></span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -22,7 +22,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"> #ifndef _U2_BAM_BGZF_READER_H_</span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="diff"> #define _U2_BAM_BGZF_READER_H_</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="diff"> </span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="diff"> </span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="diff"> #include <U2Core/IOAdapter.h></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="diff"> #include "VirtualOffset.h"</span>
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/plugins/dbi_bam/src/BgzfWriter.h</span></span>
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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/plugins/dbi_bam/src/BgzfWriter.h</span></span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -22,7 +22,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"> #ifndef _U2_BAM_BGZF_WRITER_H_</span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"> #define _U2_BAM_BGZF_WRITER_H_</span>
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <3rdparty/zlib/zlib.h></span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <zlib.h></span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="diff"> </span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="diff"> #include <U2Core/IOAdapter.h></span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="diff"> #include "VirtualOffset.h"</span></pre>
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<li id="4d4a394ff4174f20019a8af4d8b6185efe92c21f">
<a href="https://salsa.debian.org/med-team/ugene/compare/b567a5b51bd4f54be8098f53b16122b4400ef0cb...3f868ce36dfc0f67461765453cd04526e218a956#4d4a394ff4174f20019a8af4d8b6185efe92c21f"><strong>debian/patches/hardening.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,8 +22,8 @@ Forwarded: no</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> win32 : QMAKE_CFLAGS_RELEASE = -O2 -Oy- -MD -Zi</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> win32 : QMAKE_CXXFLAGS_RELEASE = -O2 -Oy- -MD -Zi</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"> win32 : QMAKE_LFLAGS_RELEASE = /INCREMENTAL:NO /MAP /MAPINFO:EXPORTS /DEBUG</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -<span class="idiff left right">29,6 +34,10 @@ macx</span> {</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> QMAKE_CXXFLAGS += -W<span class="idiff left right">all -Wno-ignored-attributes</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -<span class="idiff left right">34,6 +39,10 @@ linux-g++</span> {</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> QMAKE_CXXFLAGS += -W<span class="idiff left right">no-expansion-to-defined</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+QMAKE_CXXFLAGS += $$(CXXFLAGS)</span></span>
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<a href="https://salsa.debian.org/med-team/ugene/compare/b567a5b51bd4f54be8098f53b16122b4400ef0cb...3f868ce36dfc0f67461765453cd04526e218a956#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_debian_sqlite.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">hardening.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">debian_packaged_libs.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/ugene/compare/b567a5b51bd4f54be8098f53b16122b4400ef0cb...3f868ce36dfc0f67461765453cd04526e218a956#d185b62d54557160e7ddc743405a9cec66dcaa96"><strong>debian/patches/use_debian_sqlite.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -127,21 +127,21 @@ Last-Updated: 2013-11-30</td>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="diff"> DEFINES+= QT_DLL QT_FATAL_ASSERT</span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="diff"> INCLUDEPATH += src _tmp ../include ../corelibs/U2Private/src</span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lsqlite3 -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lsqlite3 -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="diff"> if(exclude_list_enabled()|!exists( ../libs_3rdparty/QSpec/QSpec.pro )) {</span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">humimit</span></span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">QSpec</span></span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -26,8 +26,8 @@ if(exclude_list_enabled()|!exists( ../li</span></span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="diff"> DESTDIR=../_debug</span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="diff"> MOC_DIR=_tmp/moc/debug</span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="diff"> OBJECTS_DIR=_tmp/obj/debug</span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Testd -lU2Langd -lU2Privated -lugenedbd -lbreakpadd -l<span class="idiff left right">humimit</span>d</span></span>
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141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Testd -lU2Langd -lU2Privated <span class="idiff left right"> -lbreakpadd -lhumimit</span>d</span></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Testd -lU2Langd -lU2Privated -lugenedbd -lbreakpadd -l<span class="idiff left right">QSpec</span>d</span></span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2Test -lU2Lang -lU2Private -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Testd -lU2Langd -lU2Privated <span class="idiff left right">-lbreakpadd -lQSpec</span>d</span></span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="diff"> if(exclude_list_enabled()|!exists( ../libs_3rdparty/QSpec/QSpec.pro )) {</span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">humimit</span>d</span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">QSpec</span>d</span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/ugeneui/ugeneui.pri</span></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/ugeneui/ugeneui.pri</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -149,19 +149,19 @@ Last-Updated: 2013-11-30</td>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="diff"> INCLUDEPATH += src _tmp ../include ../corelibs/U2Private/src ../libs_3rdparty/QSpec/src</span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="diff"> macx : INCLUDEPATH += /System/Library/Frameworks/Security.framework/Headers</span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lsqlite3 -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LIBS += -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lsqlite3 -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="diff"> macx: LIBS += /System/Library/Frameworks/Security.framework/Security</span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="diff"> if(exclude_list_enabled()|!exists( ../libs_3rdparty/QSpec/QSpec.pro )) {</span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">humimit</span></span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">QSpec</span></span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -31,8 +31,8 @@ if(exclude_list_enabled()|!exists( ../li</span></span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="diff"> DESTDIR=../_debug</span>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="diff"> MOC_DIR=_tmp/moc/debug</span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="diff"> OBJECTS_DIR=_tmp/obj/debug</span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Viewd -lU2Testd -lU2Langd -lU2Privated -lugenedbd -lbreakpadd -l<span class="idiff left right">humimit</span>d</span></span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lbreakpad -l<span class="idiff left right">humimit</span></span></span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Viewd -lU2Testd -lU2Langd -lU2Privated -lbreakpadd -l<span class="idiff left right">humimit</span>d</span></span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lugenedb -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Viewd -lU2Testd -lU2Langd -lU2Privated -lugenedbd -lbreakpadd -l<span class="idiff left right">QSpec</span>d</span></span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS -= -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Private -lbreakpad -l<span class="idiff left right">QSpec</span></span></span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ LIBS += -L../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Viewd -lU2Testd -lU2Langd -lU2Privated -lbreakpadd -l<span class="idiff left right">QSpec</span>d</span></span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="diff"> if(exclude_list_enabled()|!exists( ../libs_3rdparty/QSpec/QSpec.pro )) {</span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">humimit</span>d</span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"> LIBS -= -l<span class="idiff left right">QSpec</span>d</span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="diff"> }</span></pre>
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