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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/acd241056170936579f8845fd44b2c5f9ee4bbf4">acd24105</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-29T22:00:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Prepare for 2.7.0a
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/f63b662c8ecada63f470e404342972877c0f9333">f63b662c</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-29T22:00:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.7.0a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/353262671bfa57eab2d939b37bdef86d1080bfd3">35326267</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-29T22:00:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.7.0a+dfsg'
Update to upstream version '2.7.0a+dfsg'
with Debian dir 8539077aa6d8d1a1e61dfc49b60f3a8cee613859</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/a222679cb452c27a95d7281f6673d62681b35fd8">a222679c</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-29T22:28:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Preparing for upload
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/d75b8d87c7d058e2d47a19519e5805f3be19a138">d75b8d87</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-29T22:28:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.7.0a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/695761097bea5dbb2bce9a7d9ee867836bb13ee7">69576109</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-01-29T22:39:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.7.0a+dfsg'
Update to upstream version '2.7.0a+dfsg'
with Debian dir 3943627b838d57583c1102973431b41cbd2fa744
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#e15fe6a3aa4284cb8b1685bd77b426cd5fbd7737">
debian/patches/donotuse_own_htslib.patch
</a>
</li>
<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
</a>
</li>
<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
</a>
</li>
<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
</a>
</li>
<li class="file-stats">
<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
</a>
</li>
<li class="file-stats">
<a href="#8955c7301dc01c7f9b2a350f2aee6066e91f8f83">
<span class="new-file">
+
extras/docker/Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#385d57a3ccf42a0b7462635b147b385a25e91797">
source/Genome.cpp
</a>
</li>
<li class="file-stats">
<a href="#f4eb1c9c89d8a6664c03d29afd21f3104689a8d9">
source/Genome_genomeGenerate.cpp
</a>
</li>
<li class="file-stats">
<a href="#a0b6c92785c5892df94b89d21ead0dc460541d74">
source/IncludeDefine.h
</a>
</li>
<li class="file-stats">
<a href="#6ae9e88712056a2abd55911f4d3a7d8b8145819c">
source/Makefile
</a>
</li>
<li class="file-stats">
<a href="#6e7e9199db44be8b0f606c7c21db10763fc8b0eb">
source/Parameters.cpp
</a>
</li>
<li class="file-stats">
<a href="#09b38547a28087b813616bd2a7334493c3862c48">
source/Parameters.h
</a>
</li>
<li class="file-stats">
<a href="#bf27f52254916f0127a15b2aa4242b8679bb9815">
<span class="new-file">
+
source/ParametersSolo.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#924480e837c06acd1472c069adb0bb8cae0b6bc1">
<span class="new-file">
+
source/ParametersSolo.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#488388fcfa1829288a3e4e4fd9dacf8ed6b8a693">
source/ReadAlign.cpp
</a>
</li>
<li class="file-stats">
<a href="#238ae46f3e2ae6c05a1eca3f159a54222230394e">
source/ReadAlign.h
</a>
</li>
<li class="file-stats">
<a href="#0f351bd6f52ff0c9ab03a4771ab917025e709afc">
source/ReadAlignChunk.cpp
</a>
</li>
<li class="file-stats">
<a href="#7245d12cb1ad9b44f08daa0ab3e702d4bed39531">
source/ReadAlignChunk_processChunks.cpp
</a>
</li>
<li class="file-stats">
<a href="#764c3cfc36fad2f293fd356112b8836ea61e0b02">
source/ReadAlign_alignBAM.cpp
</a>
</li>
<li class="file-stats">
<a href="#38255560373004439a41922897da553297a784d2">
source/ReadAlign_outputAlignments.cpp
</a>
</li>
<li class="file-stats">
<a href="#271c08a4a0666dba167141cb88ea5719af722229">
source/ReadAlign_quantTranscriptome.cpp
</a>
</li>
<li class="file-stats">
<a href="#4896a67af34962395106d0bd2c41b227ffde5a58">
source/STAR.cpp
</a>
</li>
<li class="file-stats">
<a href="#fe90b02c2a1b9c4383b00f761ae92e70b34253ac">
source/SequenceFuns.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/rna-star/compare/bbb705239d1116522a235146b7476b2161866f49...695761097bea5dbb2bce9a7d9ee867836bb13ee7">View it on GitLab</a>.
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