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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/commit/82fa560ca4fdc1dec8a9ea7bb756df08f5264ff3">82fa560c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-01-30T13:42:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.17+dfsg</pre>
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</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="new-file">
+
.travis.yml
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</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
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<li class="file-stats">
<a href="#8cba0216d3ee9ef186a016b86bfd2a6d0f609a86">
build_java9.gradle
</a>
</li>
<li class="file-stats">
<a href="#0b59a06aec235c8ae40c4513f351a515b779a0c6">
genomes/db/hg19/hg19_annotations.xml
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<li class="file-stats">
<a href="#79af1f1fc0b2f1f64f1360f3f80e71bb81998051">
genomes/genomes.txt
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<li class="file-stats">
<a href="#8e61660f1b90c14fd5e0edc481b91810023dd589">
src/main/java/org/broad/igv/feature/genome/GenomeManager.java
</a>
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<li class="file-stats">
<a href="#eb788968cb505371b78d1a51cfd2b0304b9f7bc7">
src/main/java/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
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<li class="file-stats">
<a href="#8c1bb116afbf0f5ff8832eefe8b343e75928a72c">
src/main/java/org/broad/igv/maf/MAFIndex.java
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<li class="file-stats">
<a href="#45cc851fb34019a41251cdf5260e2b7ef3af3d79">
src/main/java/org/broad/igv/maf/MAFParser.java
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<li class="file-stats">
<a href="#06f35c65534cfa60fab73f84ad0c54c23e2102a2">
src/main/java/org/broad/igv/maf/MAFRenderer.java
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<li class="file-stats">
<a href="#bd7a4bc5a92500b778d145b2eb1804836fa2a883">
src/main/java/org/broad/igv/maf/MAFtoSAM.java
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<li class="file-stats">
<a href="#9dd1fa2bc6c473d001ca7d65b4f6bbfbd3ec6a87">
src/main/java/org/broad/igv/maf/MultipleAlignmentTrack.java
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<li class="file-stats">
<a href="#121ac96b8a9d6651bd548009d94eff88d25f0783">
src/main/java/org/broad/igv/prefs/Constants.java
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<li class="file-stats">
<a href="#e480ea1001715a65d0b29bb7e39bfbb6f28f1621">
src/main/java/org/broad/igv/renderer/SequenceRenderer.java
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<li class="file-stats">
<a href="#809ecc8ca23080822802fc8cf480c07c656a2470">
src/main/java/org/broad/igv/sam/AlignmentPacker.java
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<li class="file-stats">
<a href="#b0896baad429a066d468d927c8112363a831df88">
src/main/java/org/broad/igv/sam/AlignmentRenderer.java
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<li class="file-stats">
<a href="#5085d8485ce8aa700106d65ce66b08b9e2905e46">
src/main/java/org/broad/igv/sam/AlignmentTrack.java
</a>
</li>
<li class="file-stats">
<a href="#6b00503ae42c2c92fec6033070388883c723f2c2">
src/main/java/org/broad/igv/sam/reader/BAMReader.java
</a>
</li>
<li class="file-stats">
<a href="#387123b25bf8c922cb7854ccb1f999c2f39eea44">
src/main/java/org/broad/igv/track/FeatureCollectionSource.java
</a>
</li>
<li class="file-stats">
<a href="#9ec9988938530ddf7a1fa22ad0674388e455fdf6">
src/main/java/org/broad/igv/track/TrackLoader.java
</a>
</li>
<li class="file-stats">
<a href="#d81ada11b333a6dbd9c154e874f31f5c3404150e">
src/main/java/org/broad/igv/ui/Main.java
</a>
</li>
<li class="file-stats">
<a href="#8a4e654564f64810b2f677d0296ea04553a2d992">
src/main/java/org/broad/igv/ui/commandbar/GenomeListManager.java
</a>
</li>
<li class="file-stats">
<a href="#10274887e9a4f1cf820e04b7a6874bf3fad8f957">
src/main/java/org/broad/igv/util/ResourceLocator.java
</a>
</li>
<li class="file-stats">
<a href="#2d916dd28a2bedd920890b09ec4975bf9693a38b">
src/main/resources/org/broad/igv/prefs/preferences.tab
</a>
</li>
<li class="file-stats">
<a href="#819c7bd19e2556ac8e7fda12663d60b4fe3ed43e">
src/test/java/org/broad/igv/feature/ProbeToGeneMapTest.java
</a>
</li>
<li class="file-stats">
<a href="#c7661e8650314041966f4fd6a124009ca20fc86f">
src/test/java/org/broad/igv/feature/genome/GenomeImporterTest.java
</a>
</li>
<li class="file-stats">
<a href="#cd894070d31790c34c765c47801c00bb01ea6de0">
src/test/java/org/broad/igv/feature/genome/fasta/FastaUtilsTest.java
</a>
</li>
<li class="file-stats">
<a href="#d8adfa678f4809dbb477f6a5e4ce2f68e6dde431">
src/test/java/org/broad/igv/feature/tribble/CachingFeatureReaderTest.java
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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