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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbbam">Debian Med / pbbam</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/162935d8087ebc3f240119791a32daf708c8558c">162935d8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-06T08:11:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix autopkgtest on different architectures
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/60d326c62dd5f3de8eaaff107c60e11222986e7c">60d326c6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-06T08:12:03Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/923c66b93d903730b4dd49b5ab2d1d2aba7b8537">923c66b9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-06T08:15:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No "Provides: libpbbam" due to ABI incompatibility
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/pbbam/commit/4e4306f4faf8016d734fe9d54ee0cbb4b749c2a3">4e4306f4</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-02-06T08:26:18Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/pbbam/compare/d442bf387e0068f580b16b20a0ceab037a63b5b0...4e4306f4faf8016d734fe9d54ee0cbb4b749c2a3#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">pbbam (0.19.0+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> [ Steve Langasek ]</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Fix autopkgtest on different architectures</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Cleanup d/rules</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * No "Provides: libpbbam" due to ABI incompatibility</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 06 Feb 2019 09:16:06 +0100</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">pbbam (0.19.0+dfsg-3) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Team upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/pbbam/compare/d442bf387e0068f580b16b20a0ceab037a63b5b0...4e4306f4faf8016d734fe9d54ee0cbb4b749c2a3#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,7 +50,6 @@ Depends: ${shlibs:Depends},</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext">Pre-Depends: ${misc:Pre-Depends}</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">Breaks: libpbbam (<< ${source:Version})</span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext">Provides: libpbbam</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext">Replaces: libpbbam</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">Description: Pacific Biosciences binary alignment/map (BAM) library</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> The BAM format is a binary, compressed, record-oriented container format</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/pbbam/compare/d442bf387e0068f580b16b20a0ceab037a63b5b0...4e4306f4faf8016d734fe9d54ee0cbb4b749c2a3#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,20 +12,9 @@ generated_data_dir = $(CURDIR)/gendata</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dh $@ --buildsystem=meson</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">#override_dh_auto_configure:</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"># dh_auto_configure -- \</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"># -DPacBioBAM_build_shared=ON \</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"># -DPacBioBAM_build_tests=OFF \</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"># -DCMAKE_LIBRARY_PATH=$(DEB_HOST_MULTIARCH) \</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"># -DCMAKE_SKIP_RPATH=ON \</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"># -DHTSLIB_INCLUDE_DIRS=/usr/include \</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"># -DHTSLIB_LIBRARIES="-lssl -lcrypto -lhts" \</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"># -DCMAKE_SHARED_LINKER_FLAGS="$(LDFLAGS)"</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">## -DPacBioBAM_wrap_python=ON \</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">## -DPacBioBAM_wrap_r=ON</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"></span>
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27
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> dh_auto_configure -O--buildsystem=meson</span>
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29
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> mkdir -p $(generated_data_dir)</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> # Fix broken PATH</span>
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<a href="https://salsa.debian.org/med-team/pbbam/compare/d442bf387e0068f580b16b20a0ceab037a63b5b0...4e4306f4faf8016d734fe9d54ee0cbb4b749c2a3#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Test-Command: debian/rules override_dh_auto_test</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Depends:</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> make,</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> python,</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> @builddeps@,</span>
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5
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> pbbamtools,</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> python-cram,</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> samtools</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Restrictions:</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> rw-build-tree,</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> allow-stderr,</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> build-needed</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Restrictions: rw-build-tree, allow-stderr</span></pre>
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