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<h3>
Afif Elghraoui pushed to branch debian/jessie-backports
at <a href="https://salsa.debian.org/med-team/pbalign">Debian Med / pbalign</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/e5305172e075f437aac290706c104c5fd9ecce7a">e5305172</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T01:14:01Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Imported Upstream version 0.3.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/32216481a649fb1f43622f740e9b46a36bab8c31">32216481</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T01:14:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/0.3.0'
Upstream version 0.3.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/914bcf1ae2b5f3bcd89d3131165fc8b1f4bc3533">914bcf1a</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T01:25:25Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Readability improvements and clean-ups in d/control and d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/59f9d8ca5afdb7d142c59b2ada710af3b0482092">59f9d8ca</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T01:26:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update email address and copyright year
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/5f1351ce64f76d82e731d95a2b647373d961df19">5f1351ce</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T01:27:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump Standards-Version to 3.9.8
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/4a6bd5c27bda7387c58f4e86778fbc5c82615f7f">4a6bd5c2</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T01:27:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use encrypted protocols for VCS URLs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/3120bb9a9f1a084b72304f3b5e5b705db1a6203b">3120bb9a</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T02:16:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add build-dependency on pbcommand
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/3059f761bba9973ec4424fddfb213d23666f78cf">3059f761</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2016-12-24T02:16:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Prepare new revision
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/84650c64acb73fb7cfdfd5cafab8dc53dbecd98d">84650c64</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2017-01-03T00:07:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop patch applied upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/e7e6a3168b0ee45012107cea2923486211381db4">e7e6a316</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2017-01-03T00:15:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Don't install LICENSES file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/73b40cd4c4f9386f5ec74cc0f0fca7226ac1f8cd">73b40cd4</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2017-01-15T23:45:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set blasr minimum version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/83f451cd4fe74bfcb3fae7c413a3707a43c5db0e">83f451cd</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2017-01-15T23:50:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">releasing package pbalign version 0.3.0-1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbalign/commit/2a86560ceb500ba4a4cde2bb8dad08f4fb961440">2a86560c</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2017-04-26T06:13:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'debian/0.3.0-1' into debian/jessie-backports
tagging package pbalign version debian/0.3.0-1
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9f5ba3fa0da678e08fe366fdeb5cf22592123200">
LICENSES.txt
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
</a>
</li>
<li class="file-stats">
<a href="#ea5015394da745f0e2d5ca5eab935da1fc1edce4">
<span class="deleted-file">
−
debian/patches/make-doc
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="deleted-file">
−
debian/patches/series
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#7e485c4109aab389cae17005a660ae784edfb8ea">
doc/howto.rst
</a>
</li>
<li class="file-stats">
<a href="#13dcf7321fe64aec05fa8df22bcbc7a4ba8b47b9">
pbalign/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#85bdf4af0a5df580671d0085f63107f444faaa8f">
pbalign/alignservice/align.py
</a>
</li>
<li class="file-stats">
<a href="#c35ee87c72d56b57cd3e6ba1c543c0f68433c6b8">
pbalign/alignservice/blasr.py
</a>
</li>
<li class="file-stats">
<a href="#c5a3b2b97dfac6aefb8f472c2fee2497bda63576">
pbalign/forquiverservice/loadpulses.py
→
pbalign/bampostservice.py
</a>
</li>
<li class="file-stats">
<a href="#5d9442d9d214fbf9805b31eb7f542a0f137dcb83">
<span class="new-file">
+
pbalign/ccs.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#2960859b261d0263d83e28aa90b68f2d9d6ae8a8">
pbalign/filterservice.py
</a>
</li>
<li class="file-stats">
<a href="#c689d165c65158f996e6f99b4469b4e0bc9ab301">
<span class="deleted-file">
−
pbalign/forquiverservice/__init__.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#6005bc95f87c1b0d614e57b15f02cb98b67b8ae0">
<span class="deleted-file">
−
pbalign/forquiverservice/forquiver.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#3c7e7e6546d69a0e6c51c4b52fc41455c348d155">
<span class="deleted-file">
−
pbalign/forquiverservice/loadchemistry.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#2ad37a940931898e0fd0ae0ff20f60fe467d90a0">
<span class="deleted-file">
−
pbalign/forquiverservice/repack.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#754d31921bcef519796b9e543907268aeca398f5">
<span class="deleted-file">
−
pbalign/forquiverservice/sort.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#d8d167b0b40b92254643e591c27fd617a89b6466">
pbalign/options.py
</a>
</li>
<li class="file-stats">
<a href="#b4d76644158d912c579747dea6d587e3e7f63dde">
pbalign/pbalignfiles.py
</a>
</li>
<li class="file-stats">
<a href="#dff2fc73d657af37111868736ee4febce9dafe43">
pbalign/pbalignrunner.py
</a>
</li>
<li class="file-stats">
<a href="#761ce15531da8883ad05c2b7ac06cfa8506dd268">
<span class="new-file">
+
pbalign/tasks/__init__.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#7028f192600557ce3b1e8d0f432343eafefa8b4b">
<span class="new-file">
+
pbalign/tasks/consolidate_alignments.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9fd4ed2061d8fef2f0047a29c6f9451301dc64f5">
pbalign/tools/createChemistryHeader.py
</a>
</li>
<li class="file-stats">
<a href="#766b697e7f24e6a6a388f008b2bdace28bd386e6">
pbalign/utils/fileutil.py
</a>
</li>
<li class="file-stats">
<a href="#0c769244752b8528fef3532a69ed27633d45e51f">
pbalign/utils/progutil.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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