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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bioperl-run">Debian Med / bioperl-run</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/4309a491407c1c2eb1cd84444b21d45f41ba4c3b">4309a491</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T17:04:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.7.3</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/bbf3f599ac1b06cadfc56b777039d3ef71786a54">bbf3f599</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T17:04:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.7.3'
Update to upstream version '1.7.3'
with Debian dir 9069fda3ac5233b9d6dc74a72386ee3d4cbf4e7b</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/d752600b192131d70a96776daa9c9fbf91293fbc">d752600b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T17:04:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/d544f0ce27936a7df65a354432940bb71fa019ae">d544f0ce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T17:04:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/59268e192b15a7f6936052a0d259d9578c251c74">59268e19</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T17:07:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.3.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/010919bf2584ffe232989362491bf77a61ea39f3">010919bf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T17:43:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/db95ae42406c6a875f62d27d720ad11654b5ae13">db95ae42</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T20:45:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip tests for soap
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/a7fdcb3c1b325f3f3ebb9a8e0d848789637ca820">a7fdcb3c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T20:52:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop dependencies: bowtie, bwa, maq, t-coffee, gmap, paml
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/71d4594bfad6d008fcce018c2849d5451810411d">71d4594b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T21:14:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned (Build-)Depends: bioperl (>= 1.7.4)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioperl-run/commit/0a45cebfb018e795fe6f15a89a85bc339628daf7">0a45cebf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-11T21:17:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>24 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#249199540ceee6ec6b4a1f1daa24666f4aa042eb">
Build.PL
</a>
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<li class="file-stats">
<a href="#8aa57de6dce6ee1c35c6aba7426503281876b258">
Changes
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#37f400fa1778c7707b8f8ba96f5e4c9e8dde1743">
<span class="deleted-file">
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debian/patches/fix_bowtie_call.patch
</span>
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#2204c34749ecff855a88f24171040b2b3edc0f10">
<span class="deleted-file">
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debian/patches/skip_tests_for_bowtie.patch
</span>
</a>
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<li class="file-stats">
<a href="#ee77390036e21b4a6055503602b7d784c1d67a93">
<span class="deleted-file">
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debian/patches/skip_tests_for_maq.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#4ff5e493f10a46177a96eb51c011691a8a9b6c7f">
debian/patches/skip_tests_for_ncbi-blast+.patch
</a>
</li>
<li class="file-stats">
<a href="#e4279aa9adfc288d358e44ec28f8d4a1f5be35cf">
<span class="new-file">
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debian/patches/skip_tests_for_soap.patch
</span>
</a>
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<li class="file-stats">
<a href="#cee5efee5b7a6b7e5a7f45204f14bf33c84d67e6">
<span class="deleted-file">
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lib/Bio/Installer/EMBOSS.pm
</span>
</a>
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<li class="file-stats">
<a href="#b8322a0d8bce4acadbcfe61d8da8fd29b240b961">
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lib/Bio/Installer/Generic.pm
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<li class="file-stats">
<a href="#4cf6d9b7d6df312d1fb1b4c299c28ea0f6b2147d">
<span class="deleted-file">
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lib/Bio/Installer/Hyphy.pm
</span>
</a>
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<li class="file-stats">
<a href="#8897959b101e5f0aa626470955851e44d3c88793">
<span class="deleted-file">
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lib/Bio/Installer/Muscle.pm
</span>
</a>
</li>
<li class="file-stats">
<a href="#b5d27ad81f339786fe39f617336efb0c6d7fad24">
<span class="deleted-file">
−
lib/Bio/Installer/Probcons.pm
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<li class="file-stats">
<a href="#4829e186ddcc0ca6a5d5ea8526d9b56b0f70a0b1">
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lib/Bio/Installer/SLR.pm
</span>
</a>
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<li class="file-stats">
<a href="#d2524a625d9c49fd455e59473d5404ffb542f059">
lib/Bio/Tools/Run/Alignment/Muscle.pm
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<li class="file-stats">
<a href="#3a1a23a3ecd6e9f8d7d5131c4cfeeb5d5a2eb616">
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lib/Bio/Tools/Run/Analysis.pm
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<li class="file-stats">
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lib/Bio/Tools/Run/AnalysisFactory.pm
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lib/Bio/Tools/Run/AssemblerBase.pm
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lib/Bio/Tools/Run/BWA.pm
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lib/Bio/Tools/Run/BWA/Config.pm
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<li class="file-stats">
<a href="#f84eb2046ee05b7eb0cbd6e9b3b5e4ecbf8d7336">
lib/Bio/Tools/Run/BlastPlus.pm
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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