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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/t-coffee">Debian Med / t-coffee</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/t-coffee/commit/a6447fea820abf1234f34d679869edb1d3f1aed6">a6447fea</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-12T18:37:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not use -i flag to ignore build failures
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/t-coffee/commit/90485bc570f6d1e88846a762038e95f39eb9fb45">90485bc5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-12T18:37:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/t-coffee/commit/9a3ad3502498c4f8d13bbea2d7b0f35d1fb7b898">9a3ad350</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-12T18:37:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/t-coffee/commit/47acd1afdd694f2a290ec036e46f1867169fa2bc">47acd1af</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-12T18:37:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/t-coffee/commit/88c53e412f7d9fa7e2668aef0747bbfc18581927">88c53e41</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-12T18:37:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/t-coffee/commit/bc5fa3585da3c169bebb8109ac40c4b06165b258">bc5fa358</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-12T18:39:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/t-coffee/compare/8801a29654f553556f3d14d2a00e1fc5e10b421f...bc5fa3585da3c169bebb8109ac40c4b06165b258#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">t-coffee (12.00.7fb08c2-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Do not use -i flag to ignore build failures</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Closes: #922149</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper 12</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Secure URI in copyright format</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Remove trailing whitespace in debian/rules</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 12 Feb 2019 19:37:40 +0100</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">t-coffee (12.00.7fb08c2-2) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -101,7 +112,7 @@ t-coffee (11.00.8cbe486-2) unstable; urgency=medium</td>
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<td class="diff-line-num new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext">t-coffee (11.00.8cbe486-1) unstable; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> [ Charles Plessy ]</span>
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<td class="diff-line-num old old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> * Suggest ncbi-blast+.<span class="idiff left right"> </span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> * Suggest ncbi-blast+.</span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> * New upstream version</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -268,7 +279,7 @@ t-coffee (5.72-1) unstable; urgency=low</td>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> - Upated the dm-coffee patch because dialign-t was renamed dialign-tx.</span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> - Dropped the unicode conversion patch.</span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> - Dropped the manpage patch (implements the clear rule through CDBS).</span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="plaintext"> * Updated my email address.<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> * Updated my email address.</span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> -- Charles Plessy <plessy@debian.org> Mon, 30 Jun 2008 23:34:32 +0900</span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/t-coffee/compare/8801a29654f553556f3d14d2a00e1fc5e10b421f...bc5fa3585da3c169bebb8109ac40c4b06165b258#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">2</span></span></pre>
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<a href="https://salsa.debian.org/med-team/t-coffee/compare/8801a29654f553556f3d14d2a00e1fc5e10b421f...bc5fa3585da3c169bebb8109ac40c4b06165b258#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Uploaders: Steffen Moeller <moeller@debian.org>,</td>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p"><</span><span class="n" style="color: #333;">tille</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"><span class="n" style="color: #333;">Section</span><span class="p">:</span> <span class="n" style="color: #333;">science</span></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"><span class="n" style="color: #333;">Priority</span><span class="p">:</span> <span class="n" style="color: #333;">optional</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="mosel"><span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="n" style="color: #333;">debhelper</span> <span class="p">(>=</span> <span class="m" style="color: #099;">1<span class="idiff left right">1</span></span><span class="p">~)</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"><span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span><span class="p">:</span> <span class="n" style="color: #333;">debhelper</span> <span class="p">(>=</span> <span class="m" style="color: #099;">1<span class="idiff left right">2</span></span><span class="p">~)</span></span>
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8
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"><span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.3.0</span></span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Browser</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">t</span><span class="p">-</span><span class="n" style="color: #333;">coffee</span></span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"><span class="n" style="color: #333;">Vcs</span><span class="p">-</span><span class="n" style="color: #333;">Git</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">t</span><span class="p">-</span><span class="n" style="color: #333;">coffee</span><span class="p">.</span><span class="n" style="color: #333;">git</span></span>
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<a href="https://salsa.debian.org/med-team/t-coffee/compare/8801a29654f553556f3d14d2a00e1fc5e10b421f...bc5fa3585da3c169bebb8109ac40c4b06165b258#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Source: http://www.tcoffee.org/Packages/Stable/Latest/T-COFFEE_distribution_Version_10.00.r1613.tar.gz</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Files: *</span>
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<a href="https://salsa.debian.org/med-team/t-coffee/compare/8801a29654f553556f3d14d2a00e1fc5e10b421f...bc5fa3585da3c169bebb8109ac40c4b06165b258#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,11 +11,11 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dh $@ --sourcedirectory=t_coffee_source</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dh_auto_build -- <span class="idiff left right">-i </span>USER_BIN=../bin/ FCC="$(FCC)" all</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> dh_auto_build -- USER_BIN=../bin/ FCC="$(FCC)" all</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> rm -rf t_coffee_source/*.o t_coffee_source/t_coffee bin/t_coffee $(shell find example/ -size 0) bin/t_coffee</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> rm -rf t_coffee_source/TMalign<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> rm -rf t_coffee_source/TMalign</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> find . -name "*.o" -delete</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> find . -name "*.deps" -delete</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> chmod 644 example/*</span>
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