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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-biom-format">Debian Med / python-biom-format</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/commit/0100495d4a77ba5a430ae16f5518cc7a37a97e18">0100495d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-13T20:54:45Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert the attempt to move examples into separate package and by doing so delay solution for bug #919586
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/commit/530f360ba74ac413b20e75a0fb11dad8354721d0">530f360b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-13T20:59:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix "Could not import extension sphinx.ext.pngmath"
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/commit/d354b8e83d525f3c5e9103c3f91ebcfea121ff06">d354b8e8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-13T21:13:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deactivate autopkgtest for the moment since it fails anyway
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biom-format/commit/98c8d56fa14b816521d693e6060b46ebc2c251e9">98c8d56f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-13T21:17:24Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>8 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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+
debian/patches/sphinx.ext.pngmath.patch
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debian/rules
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<a href="#6b313a808eb8df58bccc065a1d6694b644a01be8">
debian/tests/control
→
debian/tests/control_no_test
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<li class="file-stats">
<a href="#801545f34e82f7017c6be9d7b9991c9f9a8a472d">
debian/tests/python2
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<li class="file-stats">
<a href="#d4d314efb5b9ad9ddb7a3e283218922e96fac066">
debian/tests/python3
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-biom-format/compare/1dda2a0e952c1324c71a474f90ac4d38eb2efbc3...98c8d56fa14b816521d693e6060b46ebc2c251e9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biom</span><span class="p">-</span><span class="n" style="color: #333;">format</span> <span class="p">(</span><span class="m" style="color: #099;">2.1.7</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;"><span class="idiff left right">UNRELEASED</span></span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-biom-format (2.1.7+dfsg-2) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Do not ship *.c and *.pyx cython input files in binary packages</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;"><span class="idiff left">Provide</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">examples</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">and</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tests</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">separate</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">python</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">biom</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">format</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff right">examples</span></span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="mosel"> <span class="k" style="font-weight: 600;"><span class="idiff left right">package</span></span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="mosel"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">Closes</span></span><span class="p"><span class="idiff">:</span></span><span class="idiff"> </span><span class="p"><span class="idiff">#</span></span><span class="m" style="color: #099;"><span class="idiff right">919586</span></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * <span class="idiff left right">Fix "Could not import extension sphinx.ext.pngmath"</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> <span class="idiff left right">Closes: #922258</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> <span class="idiff left right">* Deactivate autopkgtest for the moment since it fails anyway</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p"><</span><span class="n" style="color: #333;">tille</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;"><span class="idiff left">Mon</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">21</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Jan</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">2019</span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff">21</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff">27</span></span><span class="p"><span class="idiff">:</span></span><span class="m" style="color: #099;"><span class="idiff right">48</span></span> <span class="p">+</span><span class="m" style="color: #099;">0100</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Wed, 13 Feb 2019 22:13:47</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">python-biom-format (2.1.7+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -151,30 +151,31 @@ Description: command-line tools for BIOM format</td>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> This package provides the command-line tools for the BIOM format Python</span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> package.</span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext">Package: python-biom-format-examples</span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext">Section: doc</span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="plaintext">Description: examples and test data for BIOM format</span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> The BIOM file format (canonically pronounced biome) is designed to be a</span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> general-use format for representing biological sample by observation</span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> contingency tables. BIOM is a recognized standard for the Earth</span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> Microbiome Project and is a Genomics Standards Consortium candidate</span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> project.</span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> The BIOM format is designed for general use in broad areas of</span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> comparative -omics. For example, in marker-gene surveys, the primary use</span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> of this format is to represent OTU tables: the observations in this case</span>
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> are OTUs and the matrix contains counts corresponding to the number of</span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> times each OTU is observed in each sample. With respect to metagenome</span>
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> data, this format would be used to represent metagenome tables: the</span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> observations in this case might correspond to SEED subsystems, and the</span>
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> matrix would contain counts corresponding to the number of times each</span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> subsystem is observed in each metagenome. Similarly, with respect to</span>
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> genome data, this format may be used to represent a set of genomes: the</span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> observations in this case again might correspond to SEED subsystems, and</span>
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> the counts would correspond to the number of times each subsystem is</span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> observed in each genome.</span>
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178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="plaintext"> .</span>
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179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="plaintext"> This package provides the examples and tests for the BIOM format Python</span>
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180
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="plaintext"> package.</span></pre>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"># This is needed to close bug #919586</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext">#Package: python-biom-format-examples</span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext">#Architecture: all</span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext">#Section: doc</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext">#Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext">#Description: examples and test data for BIOM format</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"># The BIOM file format (canonically pronounced biome) is designed to be a</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"># general-use format for representing biological sample by observation</span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"># contingency tables. BIOM is a recognized standard for the Earth</span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"># Microbiome Project and is a Genomics Standards Consortium candidate</span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"># project.</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"># .</span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"># The BIOM format is designed for general use in broad areas of</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"># comparative -omics. For example, in marker-gene surveys, the primary use</span>
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"># of this format is to represent OTU tables: the observations in this case</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"># are OTUs and the matrix contains counts corresponding to the number of</span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"># times each OTU is observed in each sample. With respect to metagenome</span>
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"># data, this format would be used to represent metagenome tables: the</span>
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"># observations in this case might correspond to SEED subsystems, and the</span>
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"># matrix would contain counts corresponding to the number of times each</span>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"># subsystem is observed in each metagenome. Similarly, with respect to</span>
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"># genome data, this format may be used to represent a set of genomes: the</span>
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"># observations in this case again might correspond to SEED subsystems, and</span>
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"># the counts would correspond to the number of times each subsystem is</span>
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"># observed in each genome.</span>
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"># .</span>
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"># This package provides the examples and tests for the BIOM format Python</span>
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"># package.</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/python-biom-format/compare/1dda2a0e952c1324c71a474f90ac4d38eb2efbc3...98c8d56fa14b816521d693e6060b46ebc2c251e9#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,3 +3,4 @@ no-web-adds.patch</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">fix_future_import.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">enable_sloppy_sphinx_build.patch</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">sphinx_1.6.patch</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">sphinx.ext.pngmath.patch</span></pre>
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<li id="198d5c00e2fa0be2217b15cd9a002e37bdf8a532">
<a href="https://salsa.debian.org/med-team/python-biom-format/compare/1dda2a0e952c1324c71a474f90ac4d38eb2efbc3...98c8d56fa14b816521d693e6060b46ebc2c251e9#198d5c00e2fa0be2217b15cd9a002e37bdf8a532"><strong>debian/patches/sphinx.ext.pngmath.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Fix "Could not import extension sphinx.ext.pngmath"</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/922258</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Last-Update: Wed, 13 Feb 2019 21:39:48 +0100</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/doc/conf.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/doc/conf.py</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -39,7 +39,7 @@ autosummary_generate = glob.glob('*.rst'</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> # Add any Sphinx extension module names here, as strings. They can be extensions</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> # coming with Sphinx (named 'sphinx.ext.*') or your custom ones.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> extensions = ['sphinx.ext.autodoc',</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- 'sphinx.ext.pngmath',</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ 'sphinx.ext.imgmath',</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> 'numpydoc',</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> 'sphinx.ext.coverage',</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> 'sphinx.ext.doctest',</span></pre>
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<a href="https://salsa.debian.org/med-team/python-biom-format/compare/1dda2a0e952c1324c71a474f90ac4d38eb2efbc3...98c8d56fa14b816521d693e6060b46ebc2c251e9#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -40,8 +40,11 @@ override_dh_installdocs-indep:</td>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python)</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python3)</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"># replace cp by ln to close bug #919586</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> cp -a examples $(shell pybuild --print build_dir --interpreter python)</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> cp -a examples $(shell pybuild --print build_dir --interpreter python3)</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"># ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python)</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"># ln -s $(CURDIR)/examples $(shell pybuild --print build_dir --interpreter python3)</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> dh_auto_test</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/python-biom-format/compare/1dda2a0e952c1324c71a474f90ac4d38eb2efbc3...98c8d56fa14b816521d693e6060b46ebc2c251e9#6b313a808eb8df58bccc065a1d6694b644a01be8"><strong>debian/tests/control</strong>
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<strong>debian/tests/control_no_test</strong>
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<a href="https://salsa.debian.org/med-team/python-biom-format/compare/1dda2a0e952c1324c71a474f90ac4d38eb2efbc3...98c8d56fa14b816521d693e6060b46ebc2c251e9#801545f34e82f7017c6be9d7b9991c9f9a8a472d"><strong>debian/tests/python2</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,10 @@ set -efu</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="nv" style="color: teal;">pys</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">$(</span>pyversions <span class="nt" style="color: navy;">-r</span> 2>/dev/null<span class="k" style="font-weight: 600;">)</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: navy;">-a</span> ./examples ./biom/tests <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ADTTMP</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Change this to close bug #919586</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: navy;">-a</span> ./examples ./tests <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ADTTMP</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#cp -a ./examples ./biom/tests "$ADTTMP"</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ADTTMP</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: teal;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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<a href="https://salsa.debian.org/med-team/python-biom-format/compare/1dda2a0e952c1324c71a474f90ac4d38eb2efbc3...98c8d56fa14b816521d693e6060b46ebc2c251e9#d4d314efb5b9ad9ddb7a3e283218922e96fac066"><strong>debian/tests/python3</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,10 @@ set -efu</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="nv" style="color: teal;">pys</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">$(</span>py3versions <span class="nt" style="color: navy;">-r</span> 2>/dev/null<span class="k" style="font-weight: 600;">)</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: navy;">-a</span> ./examples ./biom/tests <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ADTTMP</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Change this to close bug #919586</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: navy;">-a</span> ./examples ./tests <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ADTTMP</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#cp -a ./examples ./biom/tests "$ADTTMP"</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$ADTTMP</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: teal;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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