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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/a49f55a448ffcadd7a5fa27f5f8b6cba1b7e0d97">a49f55a4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-21T14:41:21Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop reduntant information in debian/reference. It is maintained in debian/upstream/metadata now
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/ec29cbbeb8ffc270ca7accfac92a83c96d1dd1f1">ec29cbbe</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-21T14:42:24Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop invalid comment - we are using canonical layout of git-buildpackage now
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/9587f1d14aa3a8ed385c72966c0ed5ec5870046f">9587f1d1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-02-21T14:59:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">install upstream NEWS as upstream changelog
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#67df3adc98b97f87d2c73e4a05f22a987c3a5a7b">
debian/gbp.conf
</a>
</li>
<li class="file-stats">
<a href="#3056231953ee62095a186cb784d8bb26cf195177">
<span class="deleted-file">
−
debian/reference
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</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#2034db427c7b64b58db6b23554d5513e5d8ee51c">
debian/samtools.docs
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/samtools/compare/770284c73cd785c17e1801ac2e07799c925cdfa0...9587f1d14aa3a8ed385c72966c0ed5ec5870046f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,8 +4,10 @@ samtools (1.9-4) UNRELEASED; urgency=medium</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Mark samtools-test as Multi-Arch: foreign.</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> * Update debian/README.Debian</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Update debian/README.Debian<span class="idiff left right">, install upstream NEWS as upstream changelog</span></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> Closes: #922861</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Drop reduntant information in debian/reference. It is maintained in</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> debian/upstream/metadata now.</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Thu, 03 Jan 2019 01:44:10 -0800</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<li id="67df3adc98b97f87d2c73e4a05f22a987c3a5a7b">
<a href="https://salsa.debian.org/med-team/samtools/compare/770284c73cd785c17e1801ac2e07799c925cdfa0...9587f1d14aa3a8ed385c72966c0ed5ec5870046f#67df3adc98b97f87d2c73e4a05f22a987c3a5a7b"><strong>debian/gbp.conf</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="conf"><span class="c" style="color: #998; font-style: italic;"># This package uses pristine-tar, and does not follow the canonical layout of git-buildpackage.</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="conf"></span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="conf">[<span class="n" style="color: #333;">dch</span>]</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="conf"><span class="c" style="color: #998; font-style: italic;"># include 7 digits of the commit id in the changelog enty:</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="conf"><span class="n" style="color: #333;">id</span>-<span class="n" style="color: #333;">length</span> = <span class="m" style="color: #099;">7</span></span></pre>
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<a href="https://salsa.debian.org/med-team/samtools/compare/770284c73cd785c17e1801ac2e07799c925cdfa0...9587f1d14aa3a8ed385c72966c0ed5ec5870046f#3056231953ee62095a186cb784d8bb26cf195177"><strong>debian/reference</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">@article{HengLi06082009,</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">author = {Li, Heng and Handsaker, Bob and Wysoker, Alec and Fennell, Tim and Ruan, Jue and Homer, Nils and Marth, Gabor and Abecasis, Goncalo and Durbin, Richard and 1000 Genome Project Data Processing Subgroup, },</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">title = {{The Sequence Alignment/Map (SAM) Format and SAMtools}},</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">journal = {Bioinformatics},</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">volume = {},</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">number = {},</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">pages = {btp352},</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">doi = {10.1093/bioinformatics/btp352},</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">year = {2009},</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp352v1},</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/btp352v1.pdf}</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">}</span></pre>
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<a href="https://salsa.debian.org/med-team/samtools/compare/770284c73cd785c17e1801ac2e07799c925cdfa0...9587f1d14aa3a8ed385c72966c0ed5ec5870046f#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,3 +45,6 @@ override_dh_install:</td>
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45
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' $${pscript} ; \</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> done</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">override_dh_installchangelogs:</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> dh_installchangelogs NEWS</span></pre>
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<a href="https://salsa.debian.org/med-team/samtools/compare/770284c73cd785c17e1801ac2e07799c925cdfa0...9587f1d14aa3a8ed385c72966c0ed5ec5870046f#2034db427c7b64b58db6b23554d5513e5d8ee51c"><strong>debian/samtools.docs</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">AUTHORS</span></pre>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">debian/reference</span></pre>
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