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<h3>
Aaron M. Ucko pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/ncbi-entrez-direct">Debian Med / ncbi-entrez-direct</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/commit/857290e0db7609751c8e208731ea3cab6ded4c28">857290e0</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-02-27T02:22:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 10.9.20190219+ds</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#0aae011363caa6b0a509245f540cbd08b70f0d78">
nquire
</a>
</li>
<li class="file-stats">
<a href="#96f5584f0d6dcaca2b56481ad25dbd045758ed30">
xtract.go
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="0aae011363caa6b0a509245f540cbd08b70f0d78">
<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/commit/857290e0db7609751c8e208731ea3cab6ded4c28#0aae011363caa6b0a509245f540cbd08b70f0d78"><strong>nquire</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -84,6 +84,7 @@ sub clearflags {</td>
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84
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="perl"> <span class="nv" style="color: teal;">$debug</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">false</span><span class="p">;</span></span>
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85
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="perl"> <span class="nv" style="color: teal;">$http</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">""</span><span class="p">;</span></span>
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86
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="perl"> <span class="nv" style="color: teal;">$j2x</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">false</span><span class="p">;</span></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="perl"> <span class="nv" style="color: teal;">$x2j</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">false</span><span class="p">;</span></span>
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87
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="perl"> <span class="nv" style="color: teal;">$output</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">""</span><span class="p">;</span></span>
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88
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="perl"><span class="p">}</span></span>
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89
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="perl"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -492,12 +493,12 @@ BioThings Queries</td>
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492
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493
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<pre style="margin: 0;"> <span id="LC493" class="line" lang="perl"><span class="sx" style="color: #d14;">EDirect Expansion</span></span>
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493
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<td class="diff-line-num new_line" data-linenumber="494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
494
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<pre style="margin: 0;"> <span id="LC494" class="line" lang="perl"></span>
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494
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495
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<pre style="margin: 0;"> <span id="LC495" class="line" lang="perl"><span class="sx" style="color: #d14;"> ExtractIDs() {</span></span>
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495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="perl"><span class="sx" style="color: #d14;"> xtract -pattern BIO_THINGS -block Id -tab "\\n" -element <span class="idiff left right">"Id"</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="perl"><span class="sx" style="color: #d14;"> xtract -pattern BIO_THINGS -block Id -tab "\\n" -element <span class="idiff left right">Id</span></span></span>
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496
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497
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<pre style="margin: 0;"> <span id="LC497" class="line" lang="perl"><span class="sx" style="color: #d14;"> }</span></span>
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497
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498
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<pre style="margin: 0;"> <span id="LC498" class="line" lang="perl"></span>
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498
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499
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<pre style="margin: 0;"> <span id="LC499" class="line" lang="perl"><span class="sx" style="color: #d14;"> WrapIDs() {</span></span>
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499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="perl"><span class="sx" style="color: #d14;"> xtract -wrp BIO_THINGS -pattern opt -wrp <span class="idiff left right">"Type"</span> -lbl "\$1" \\</span></span>
</pre>
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500
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="perl"><span class="sx" style="color: #d14;"> -wrp <span class="idiff left right">"Count" -num "\$2" -block "\$2" -wrp "Id"</span> -element "\$3" |</span></span>
</pre>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="perl"><span class="sx" style="color: #d14;"> xtract -wrp BIO_THINGS -pattern opt -wrp <span class="idiff left right">Type</span> -lbl "\$1" \\</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="perl"><span class="sx" style="color: #d14;"> -wrp <span class="idiff left right">Count -num "\$2" -block "\$2" -wrp Id</span> -element "\$3" |</span></span>
</pre>
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501
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502
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="perl"><span class="sx" style="color: #d14;"> xtract -format</span></span>
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502
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503
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<pre style="margin: 0;"> <span id="LC503" class="line" lang="perl"><span class="sx" style="color: #d14;"> }</span></span>
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504
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<pre style="margin: 0;"> <span id="LC504" class="line" lang="perl"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="585" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -584,6 +585,7 @@ sub nquire {</td>
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584
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585
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<pre style="margin: 0;"> <span id="LC585" class="line" lang="perl"> <span class="s" style="color: #d14;">'-gene'</span> <span class="o" style="font-weight: 600;">=></span> <span class="s" style="color: #d14;">'http://mygene.info/v3'</span><span class="p">,</span></span>
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585
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586
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<pre style="margin: 0;"> <span id="LC586" class="line" lang="perl"> <span class="s" style="color: #d14;">'-variant'</span> <span class="o" style="font-weight: 600;">=></span> <span class="s" style="color: #d14;">'http://myvariant.info/v1'</span><span class="p">,</span></span>
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586
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587
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<pre style="margin: 0;"> <span id="LC587" class="line" lang="perl"> <span class="s" style="color: #d14;">'-chem'</span> <span class="o" style="font-weight: 600;">=></span> <span class="s" style="color: #d14;">'http://mychem.info/v1'</span><span class="p">,</span></span>
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588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="perl"> <span class="s" style="color: #d14;">'-disease'</span> <span class="o" style="font-weight: 600;">=></span> <span class="s" style="color: #d14;">'http://mydisease.info/v1'</span><span class="p">,</span></span>
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587
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589
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<pre style="margin: 0;"> <span id="LC589" class="line" lang="perl"> <span class="s" style="color: #d14;">'-drug'</span> <span class="o" style="font-weight: 600;">=></span> <span class="s" style="color: #d14;">'http://c.biothings.io/v1'</span><span class="p">,</span></span>
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588
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590
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<pre style="margin: 0;"> <span id="LC590" class="line" lang="perl"> <span class="s" style="color: #d14;">'-taxon'</span> <span class="o" style="font-weight: 600;">=></span> <span class="s" style="color: #d14;">'http://t.biothings.io/v1'</span><span class="p">,</span></span>
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591
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<pre style="margin: 0;"> <span id="LC591" class="line" lang="perl"> <span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -695,6 +697,19 @@ sub nquire {</td>
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697
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<pre style="margin: 0;"> <span id="LC697" class="line" lang="perl"> <span class="p">}</span></span>
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698
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<pre style="margin: 0;"> <span id="LC698" class="line" lang="perl"> <span class="p">}</span></span>
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699
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<pre style="margin: 0;"> <span id="LC699" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC700" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># if present, -j2x or -x2j must be next argument (undocumented)</span></span>
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701
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<pre style="margin: 0;">+<span id="LC701" class="line" lang="perl"></span>
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: teal;">$i</span> <span class="o" style="font-weight: 600;"><</span> <span class="nv" style="color: teal;">$max</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC703" class="line" lang="perl"> <span class="nv" style="color: teal;">$pat</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">$args</span><span class="p">[</span><span class="nv" style="color: teal;">$i</span><span class="p">];</span></span>
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704
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<pre style="margin: 0;">+<span id="LC704" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: teal;">$pat</span> <span class="ow" style="font-weight: 600;">eq</span> <span class="s" style="color: #d14;">"-j2x"</span> <span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC705" class="line" lang="perl"> <span class="nv" style="color: teal;">$i</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC706" class="line" lang="perl"> <span class="nv" style="color: teal;">$j2x</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">true</span><span class="p">;</span></span>
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707
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<pre style="margin: 0;">+<span id="LC707" class="line" lang="perl"> <span class="p">}</span> <span class="k" style="font-weight: 600;">elsif</span> <span class="p">(</span> <span class="nv" style="color: teal;">$pat</span> <span class="ow" style="font-weight: 600;">eq</span> <span class="s" style="color: #d14;">"-x2j"</span> <span class="p">)</span> <span class="p">{</span></span>
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708
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<pre style="margin: 0;">+<span id="LC708" class="line" lang="perl"> <span class="nv" style="color: teal;">$i</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC709" class="line" lang="perl"> <span class="nv" style="color: teal;">$x2j</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">true</span><span class="p">;</span></span>
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710
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<pre style="margin: 0;">+<span id="LC710" class="line" lang="perl"> <span class="p">}</span></span>
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711
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<pre style="margin: 0;">+<span id="LC711" class="line" lang="perl"> <span class="p">}</span></span>
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712
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<pre style="margin: 0;">+<span id="LC712" class="line" lang="perl"></span>
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698
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713
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<pre style="margin: 0;"> <span id="LC713" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;"># read file of keyword shortcuts for URL expansion</span></span>
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699
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714
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<pre style="margin: 0;"> <span id="LC714" class="line" lang="perl"></span>
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700
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715
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<pre style="margin: 0;"> <span id="LC715" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: teal;">$i</span> <span class="o" style="font-weight: 600;"><</span> <span class="nv" style="color: teal;">$max</span> <span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="935" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -920,6 +935,16 @@ sub nquire {</td>
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920
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935
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<pre style="margin: 0;"> <span id="LC935" class="line" lang="perl"> <span class="nb" style="color: #0086b3;">binmode</span><span class="p">(</span><span class="bp" style="color: #999;">STDOUT</span><span class="p">,</span> <span class="s" style="color: #d14;">":utf8"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="921" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
921
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936
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<pre style="margin: 0;"> <span id="LC936" class="line" lang="perl"> <span class="p">}</span></span>
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922
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937
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<pre style="margin: 0;"> <span id="LC937" class="line" lang="perl"></span>
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938
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<pre style="margin: 0;">+<span id="LC938" class="line" lang="perl"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="nv" style="color: teal;">$x2j</span> <span class="p">)</span> <span class="p">{</span></span>
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939
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<pre style="margin: 0;">+<span id="LC939" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: teal;">$xc</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="nn" style="color: #555;">XML::</span><span class="nv" style="color: teal;">Simple</span><span class="p">(</span><span class="nv" style="color: teal;">KeepRoot</span> <span class="o" style="font-weight: 600;">=></span> <span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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940
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<pre style="margin: 0;">+<span id="LC940" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: teal;">$conv</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">$xc</span><span class="o" style="font-weight: 600;">-></span><span class="nv" style="color: teal;">XMLin</span><span class="p">(</span><span class="nv" style="color: teal;">$output</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="941" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
941
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<pre style="margin: 0;">+<span id="LC941" class="line" lang="perl"> <span class="nv" style="color: teal;">convert_bools</span><span class="p">(</span><span class="nv" style="color: teal;">$conv</span><span class="p">);</span></span>
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942
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<pre style="margin: 0;">+<span id="LC942" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: teal;">$jc</span> <span class="o" style="font-weight: 600;">=</span> <span class="nn" style="color: #555;">JSON::</span><span class="nv" style="color: teal;">PP</span><span class="o" style="font-weight: 600;">-></span><span class="k" style="font-weight: 600;">new</span><span class="o" style="font-weight: 600;">-></span><span class="nv" style="color: teal;">ascii</span><span class="o" style="font-weight: 600;">-></span><span class="nv" style="color: teal;">pretty</span><span class="o" style="font-weight: 600;">-></span><span class="nv" style="color: teal;">allow_nonref</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="943" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
943
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<pre style="margin: 0;">+<span id="LC943" class="line" lang="perl"> <span class="k" style="font-weight: 600;">my</span> <span class="nv" style="color: teal;">$result</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: teal;">$jc</span><span class="o" style="font-weight: 600;">-></span><span class="nv" style="color: teal;">encode</span><span class="p">(</span><span class="nv" style="color: teal;">$conv</span><span class="p">);</span></span>
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944
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<pre style="margin: 0;">+<span id="LC944" class="line" lang="perl"></span>
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945
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<pre style="margin: 0;">+<span id="LC945" class="line" lang="perl"> <span class="nv" style="color: teal;">$output</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"$result"</span><span class="p">;</span></span>
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946
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<pre style="margin: 0;">+<span id="LC946" class="line" lang="perl"> <span class="p">}</span></span>
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947
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<pre style="margin: 0;">+<span id="LC947" class="line" lang="perl"></span>
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923
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948
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<pre style="margin: 0;"> <span id="LC948" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span> <span class="s" style="color: #d14;">"$output"</span><span class="p">;</span></span>
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924
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949
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<pre style="margin: 0;"> <span id="LC949" class="line" lang="perl"><span class="p">}</span></span>
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925
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950
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<pre style="margin: 0;"> <span id="LC950" class="line" lang="perl"></span>
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<a href="https://salsa.debian.org/med-team/ncbi-entrez-direct/commit/857290e0db7609751c8e208731ea3cab6ded4c28#96f5584f0d6dcaca2b56481ad25dbd045758ed30"><strong>xtract.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -112,6 +112,7 @@ String Constraints</td>
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112
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="go"></span>
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113
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="go"><span class="s" style="color: #d14;"> -equals String must match exactly</span></span>
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114
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="go"><span class="s" style="color: #d14;"> -contains Substring must be present</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="go"><span class="s" style="color: #d14;"> -is-within String must be present</span></span>
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115
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="go"><span class="s" style="color: #d14;"> -starts-with Substring must be at beginning</span></span>
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116
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117
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="go"><span class="s" style="color: #d14;"> -ends-with Substring must be at end</span></span>
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117
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118
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="go"><span class="s" style="color: #d14;"> -is-not String must not match</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1675" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1676" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1675,6 +1676,7 @@ const (</td>
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1675
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1676
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<pre style="margin: 0;"> <span id="LC1676" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">OR</span></span>
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1676
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1677
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<pre style="margin: 0;"> <span id="LC1677" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">EQUALS</span></span>
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1677
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1678
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<pre style="margin: 0;"> <span id="LC1678" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">CONTAINS</span></span>
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1679
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<pre style="margin: 0;">+<span id="LC1679" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">ISWITHIN</span></span>
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1678
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1680
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<pre style="margin: 0;"> <span id="LC1680" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">STARTSWITH</span></span>
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1679
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1681
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<pre style="margin: 0;"> <span id="LC1681" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">ENDSWITH</span></span>
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1680
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1682
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<pre style="margin: 0;"> <span id="LC1682" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">ISNOT</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1778,6 +1780,7 @@ var argTypeIs = map[string]ArgumentType{</td>
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1778
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1780
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<pre style="margin: 0;"> <span id="LC1780" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-or"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONDITIONAL</span><span class="p">,</span></span>
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1779
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1781
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<pre style="margin: 0;"> <span id="LC1781" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-equals"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONDITIONAL</span><span class="p">,</span></span>
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1780
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1782
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<pre style="margin: 0;"> <span id="LC1782" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-contains"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONDITIONAL</span><span class="p">,</span></span>
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1783
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<pre style="margin: 0;">+<span id="LC1783" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-is-within"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONDITIONAL</span><span class="p">,</span></span>
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1781
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1784
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<pre style="margin: 0;"> <span id="LC1784" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-starts-with"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONDITIONAL</span><span class="p">,</span></span>
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1782
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1785
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<pre style="margin: 0;"> <span id="LC1785" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-ends-with"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONDITIONAL</span><span class="p">,</span></span>
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1783
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1786
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<pre style="margin: 0;"> <span id="LC1786" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-is-not"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONDITIONAL</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1893" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1896" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1893,6 +1896,7 @@ var opTypeIs = map[string]OpType{</td>
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1893
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1896
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<pre style="margin: 0;"> <span id="LC1896" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-or"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">OR</span><span class="p">,</span></span>
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1894
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<td class="diff-line-num new_line" data-linenumber="1897" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1897
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<pre style="margin: 0;"> <span id="LC1897" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-equals"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">EQUALS</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="1895" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1895
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<td class="diff-line-num new_line" data-linenumber="1898" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1898
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<pre style="margin: 0;"> <span id="LC1898" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-contains"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">CONTAINS</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1899" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1899
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<pre style="margin: 0;">+<span id="LC1899" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-is-within"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">ISWITHIN</span><span class="p">,</span></span>
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1896
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<td class="diff-line-num new_line" data-linenumber="1900" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1900
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<pre style="margin: 0;"> <span id="LC1900" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-starts-with"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">STARTSWITH</span><span class="p">,</span></span>
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<td class="diff-line-num old_line" data-linenumber="1897" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1897
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1901
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<pre style="margin: 0;"> <span id="LC1901" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-ends-with"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">ENDSWITH</span><span class="p">,</span></span>
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1898
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1902
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<pre style="margin: 0;"> <span id="LC1902" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-is-not"</span><span class="o" style="font-weight: 600;">:</span><span class="x"> </span><span class="n" style="color: #333;">ISNOT</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2586,7 +2590,7 @@ func ParseArguments(cmdargs []string, pttrn string) *Block {</td>
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2586
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2590
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<pre style="margin: 0;"> <span id="LC2590" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">cond</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">cond</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">op</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="2587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2587
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<td class="diff-line-num new_line" data-linenumber="2591" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2591
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<pre style="margin: 0;"> <span id="LC2591" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">parseStep</span><span class="p">(</span><span class="n" style="color: #333;">op</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">elementColonValue</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="2588" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2588
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<td class="diff-line-num new_line" data-linenumber="2592" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2592
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<pre style="margin: 0;"> <span id="LC2592" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">status</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="n" style="color: #333;">UNSET</span></span>
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2589
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<td class="diff-line-num new_line old" data-linenumber="2593" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2589" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">case</span><span class="x"> </span><span class="n" style="color: #333;">EQUALS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">CONTAINS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">STARTSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ENDSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ISNOT</span><span class="o" style="font-weight: 600;">:</span></span>
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2593
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<pre style="margin: 0;">+<span id="LC2593" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">case</span><span class="x"> </span><span class="n" style="color: #333;">EQUALS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">CONTAINS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;"><span class="idiff left">ISWITHIN</span></span><span class="p"><span class="idiff">,</span></span><span class="x"><span class="idiff right"> </span></span><span class="n" style="color: #333;">STARTSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ENDSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ISNOT</span><span class="o" style="font-weight: 600;">:</span></span>
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2590
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<td class="diff-line-num new_line" data-linenumber="2594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2594
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<pre style="margin: 0;"> <span id="LC2594" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">op</span><span class="x"> </span><span class="o" style="font-weight: 600;">!=</span><span class="x"> </span><span class="no" style="color: teal;">nil</span><span class="x"> </span><span class="p">{</span></span>
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2591
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<td class="diff-line-num new_line" data-linenumber="2595" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2595
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<pre style="margin: 0;"> <span id="LC2595" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span><span class="x"> </span><span class="o" style="font-weight: 600;">></span><span class="x"> </span><span class="m" style="color: #099;">1</span><span class="x"> </span><span class="o" style="font-weight: 600;">&&</span><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span><span class="x"> </span><span class="o" style="font-weight: 600;">==</span><span class="x"> </span><span class="sc" style="color: #d14;">'\\'</span><span class="x"> </span><span class="p">{</span></span>
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2592
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2596
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<pre style="margin: 0;"> <span id="LC2596" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// first character may be backslash protecting dash (undocumented)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4729,7 +4733,7 @@ func ConditionsAreSatisfied(conditions []*Operation, curr *Node, mask string, in</td>
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<td class="diff-line-num old_line" data-linenumber="4729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4729
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4733
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<pre style="margin: 0;"> <span id="LC4733" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">stat</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="n" style="color: #333;">constraint</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Type</span></span>
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4730
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4734
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<pre style="margin: 0;"> <span id="LC4734" class="line" lang="go"></span>
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4731
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4735
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<pre style="margin: 0;"> <span id="LC4735" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">switch</span><span class="x"> </span><span class="n" style="color: #333;">stat</span><span class="x"> </span><span class="p">{</span></span>
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4732
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<pre style="margin: 0;">-<span id="LC4732" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">case</span><span class="x"> </span><span class="n" style="color: #333;">EQUALS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">CONTAINS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">STARTSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ENDSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ISNOT</span><span class="o" style="font-weight: 600;">:</span></span>
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4736
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<pre style="margin: 0;">+<span id="LC4736" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">case</span><span class="x"> </span><span class="n" style="color: #333;">EQUALS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">CONTAINS</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;"><span class="idiff left">ISWITHIN</span></span><span class="p"><span class="idiff">,</span></span><span class="x"><span class="idiff right"> </span></span><span class="n" style="color: #333;">STARTSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ENDSWITH</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">ISNOT</span><span class="o" style="font-weight: 600;">:</span></span>
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4733
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<td class="diff-line-num new_line" data-linenumber="4737" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4737
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<pre style="margin: 0;"> <span id="LC4737" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// substring test on element values</span></span>
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4734
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<td class="diff-line-num new_line" data-linenumber="4738" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4738
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<pre style="margin: 0;"> <span id="LC4738" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ToUpper</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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4735
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<td class="diff-line-num new_line" data-linenumber="4739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4739
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<pre style="margin: 0;"> <span id="LC4739" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">val</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ToUpper</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4743" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4747" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4743,6 +4747,10 @@ func ConditionsAreSatisfied(conditions []*Operation, curr *Node, mask string, in</td>
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4743
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4747
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<pre style="margin: 0;"> <span id="LC4747" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Contains</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">val</span><span class="p">)</span><span class="x"> </span><span class="p">{</span></span>
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4744
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<td class="diff-line-num new_line" data-linenumber="4748" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4748
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<pre style="margin: 0;"> <span id="LC4748" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">return</span><span class="x"> </span><span class="no" style="color: teal;">true</span></span>
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4745
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<td class="diff-line-num new_line" data-linenumber="4749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4749
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<pre style="margin: 0;"> <span id="LC4749" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4750" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4750
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<pre style="margin: 0;">+<span id="LC4750" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">case</span><span class="x"> </span><span class="n" style="color: #333;">ISWITHIN</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4751" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4751
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<pre style="margin: 0;">+<span id="LC4751" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Contains</span><span class="p">(</span><span class="n" style="color: #333;">val</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="p">)</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4752" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4752
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<pre style="margin: 0;">+<span id="LC4752" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">return</span><span class="x"> </span><span class="no" style="color: teal;">true</span></span>
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4753
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<pre style="margin: 0;">+<span id="LC4753" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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4746
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<td class="diff-line-num new_line" data-linenumber="4754" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4754
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<pre style="margin: 0;"> <span id="LC4754" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">case</span><span class="x"> </span><span class="n" style="color: #333;">STARTSWITH</span><span class="o" style="font-weight: 600;">:</span></span>
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4747
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<td class="diff-line-num new_line" data-linenumber="4755" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4755
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<pre style="margin: 0;"> <span id="LC4755" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">HasPrefix</span><span class="p">(</span><span class="n" style="color: #333;">str</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">val</span><span class="p">)</span><span class="x"> </span><span class="p">{</span></span>
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4748
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<td class="diff-line-num new_line" data-linenumber="4756" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4756
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<pre style="margin: 0;"> <span id="LC4756" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">return</span><span class="x"> </span><span class="no" style="color: teal;">true</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6039,6 +6047,70 @@ func ProcessINSD(args []string, isPipe, addDash, doIndex bool) []string {</td>
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6039
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6047
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<pre style="margin: 0;"> <span id="LC6047" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">return</span><span class="x"> </span><span class="n" style="color: #333;">acc</span></span>
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6040
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6048
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<pre style="margin: 0;"> <span id="LC6048" class="line" lang="go"><span class="p">}</span></span>
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6041
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6049
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<pre style="margin: 0;"> <span id="LC6049" class="line" lang="go"></span>
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6050
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<pre style="margin: 0;">+<span id="LC6050" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// BIOTHINGS EXTRACTION COMMAND GENERATOR</span></span>
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6051
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<pre style="margin: 0;">+<span id="LC6051" class="line" lang="go"></span>
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6052
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<pre style="margin: 0;">+<span id="LC6052" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ProcessBiopath generates extraction commands for BioThings resources (undocumented)</span></span>
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6053
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<pre style="margin: 0;">+<span id="LC6053" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span><span class="x"> </span><span class="n" style="color: #333;">ProcessBiopath</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="x"> </span><span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">isPipe</span><span class="x"> </span><span class="kt" style="color: #458; font-weight: 600;">bool</span><span class="p">)</span><span class="x"> </span><span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="x"> </span><span class="p">{</span></span>
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6054
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<pre style="margin: 0;">+<span id="LC6054" class="line" lang="go"></span>
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6055
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<pre style="margin: 0;">+<span id="LC6055" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// nquire -variant variant "chr6:g.26093141G>A" | xtract -biopath "clinvar.rcv.conditions.identifiers.omim"</span></span>
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6056
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<pre style="margin: 0;">+<span id="LC6056" class="line" lang="go"></span>
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6057
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<pre style="margin: 0;">+<span id="LC6057" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// xtract -pattern opt -division clinvar -group rcv -branch conditions -block identifiers -sep "\n" -tab "\n" -element "omim,@omim"</span></span>
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6058
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<pre style="margin: 0;">+<span id="LC6058" class="line" lang="go"></span>
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6059
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<pre style="margin: 0;">+<span id="LC6059" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">var</span><span class="x"> </span><span class="n" style="color: #333;">acc</span><span class="x"> </span><span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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6060
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<pre style="margin: 0;">+<span id="LC6060" class="line" lang="go"></span>
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6061
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<pre style="margin: 0;">+<span id="LC6061" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">max</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">)</span></span>
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6062
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<pre style="margin: 0;">+<span id="LC6062" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">max</span><span class="x"> </span><span class="o" style="font-weight: 600;"><</span><span class="x"> </span><span class="m" style="color: #099;">1</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6063
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<pre style="margin: 0;">+<span id="LC6063" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">ERROR: Insufficient command-line arguments supplied to xtract -biopath</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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6064
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<pre style="margin: 0;">+<span id="LC6064" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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6065
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<pre style="margin: 0;">+<span id="LC6065" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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6066
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<pre style="margin: 0;">+<span id="LC6066" class="line" lang="go"></span>
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6067
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<pre style="margin: 0;">+<span id="LC6067" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">path</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span></span>
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6068
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<pre style="margin: 0;">+<span id="LC6068" class="line" lang="go"></span>
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6069
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<pre style="margin: 0;">+<span id="LC6069" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">dirs</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="n" style="color: #333;">strings</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Split</span><span class="p">(</span><span class="n" style="color: #333;">path</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"."</span><span class="p">)</span></span>
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6070
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<pre style="margin: 0;">+<span id="LC6070" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">max</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">dirs</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6071" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6071
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<pre style="margin: 0;">+<span id="LC6071" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">max</span><span class="x"> </span><span class="o" style="font-weight: 600;"><</span><span class="x"> </span><span class="m" style="color: #099;">1</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6072" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6072
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<pre style="margin: 0;">+<span id="LC6072" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">ERROR: Insufficient command-line arguments supplied to xtract -biopath</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6073" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6073
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<pre style="margin: 0;">+<span id="LC6073" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6074" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6074
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<pre style="margin: 0;">+<span id="LC6074" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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6075
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<pre style="margin: 0;">+<span id="LC6075" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="6076" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6076
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<pre style="margin: 0;">+<span id="LC6076" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">expname</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6077" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6077
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<pre style="margin: 0;">+<span id="LC6077" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-division"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6078" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6078
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<pre style="margin: 0;">+<span id="LC6078" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-group"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6079" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6079
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<pre style="margin: 0;">+<span id="LC6079" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-branch"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6080" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6080
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<pre style="margin: 0;">+<span id="LC6080" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-block"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6081" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6081
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<pre style="margin: 0;">+<span id="LC6081" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-section"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6082" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6082
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<pre style="margin: 0;">+<span id="LC6082" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-subset"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6083" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6083
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<pre style="margin: 0;">+<span id="LC6083" class="line" lang="go"><span class="x"> </span><span class="s" style="color: #d14;">"-unit"</span><span class="p">,</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6084" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6084
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<pre style="margin: 0;">+<span id="LC6084" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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6085
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<pre style="margin: 0;">+<span id="LC6085" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="6086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6086
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<pre style="margin: 0;">+<span id="LC6086" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">acc</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"-pattern"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"opt"</span><span class="p">)</span></span>
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6087
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<pre style="margin: 0;">+<span id="LC6087" class="line" lang="go"></span>
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6088
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<pre style="margin: 0;">+<span id="LC6088" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">max</span><span class="o" style="font-weight: 600;">--</span></span>
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6089
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<pre style="margin: 0;">+<span id="LC6089" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">max</span><span class="x"> </span><span class="o" style="font-weight: 600;">></span><span class="x"> </span><span class="m" style="color: #099;">7</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6090" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6090
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<pre style="margin: 0;">+<span id="LC6090" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Fprintf</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">ERROR: Too many nodes in argument supplied to xtract -biopath</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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6091
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<pre style="margin: 0;">+<span id="LC6091" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Exit</span><span class="p">(</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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6092
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<pre style="margin: 0;">+<span id="LC6092" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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6093
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<pre style="margin: 0;">+<span id="LC6093" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="6094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6094
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<pre style="margin: 0;">+<span id="LC6094" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">for</span><span class="x"> </span><span class="n" style="color: #333;">i</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="k" style="font-weight: 600;">range</span><span class="x"> </span><span class="n" style="color: #333;">dirs</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6095" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6095
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<pre style="margin: 0;">+<span id="LC6095" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">i</span><span class="x"> </span><span class="o" style="font-weight: 600;"><</span><span class="x"> </span><span class="n" style="color: #333;">max</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6096" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6096
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<pre style="margin: 0;">+<span id="LC6096" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">acc</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">expname</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6097
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<pre style="margin: 0;">+<span id="LC6097" class="line" lang="go"><span class="x"> </span><span class="p">}</span><span class="x"> </span><span class="k" style="font-weight: 600;">else</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6098
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<pre style="margin: 0;">+<span id="LC6098" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">isPipe</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6099
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<pre style="margin: 0;">+<span id="LC6099" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">acc</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"-sep"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s" style="color: #d14;">n"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"-tab"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\\</span><span class="s" style="color: #d14;">n"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6100
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<pre style="margin: 0;">+<span id="LC6100" class="line" lang="go"><span class="x"> </span><span class="p">}</span><span class="x"> </span><span class="k" style="font-weight: 600;">else</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6101
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<pre style="margin: 0;">+<span id="LC6101" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">acc</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"-sep"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"\\</span><span class="s" style="color: #d14;">n</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"-tab"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"\\</span><span class="s" style="color: #d14;">n</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6102
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<pre style="margin: 0;">+<span id="LC6102" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6103
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<pre style="margin: 0;">+<span id="LC6103" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">isPipe</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6104
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<pre style="margin: 0;">+<span id="LC6104" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">acc</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"-element"</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">",@"</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6105
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<pre style="margin: 0;">+<span id="LC6105" class="line" lang="go"><span class="x"> </span><span class="p">}</span><span class="x"> </span><span class="k" style="font-weight: 600;">else</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6106
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<pre style="margin: 0;">+<span id="LC6106" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">acc</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">acc</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"-element"</span><span class="p">,</span><span class="x"> </span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">str</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">",@"</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">str</span><span class="o" style="font-weight: 600;">+</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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6107
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<pre style="margin: 0;">+<span id="LC6107" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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6108
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<pre style="margin: 0;">+<span id="LC6108" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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6109
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<pre style="margin: 0;">+<span id="LC6109" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC6110" class="line" lang="go"></span>
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6111
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<pre style="margin: 0;">+<span id="LC6111" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">return</span><span class="x"> </span><span class="n" style="color: #333;">acc</span></span>
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<pre style="margin: 0;">+<span id="LC6112" class="line" lang="go"><span class="p">}</span></span>
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6113
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6114
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<pre style="margin: 0;"> <span id="LC6114" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// HYDRA CITATION MATCHER COMMAND GENERATOR</span></span>
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6115
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<pre style="margin: 0;"> <span id="LC6115" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC6116" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// ProcessHydra generates extraction commands for NCBI's in-house citation matcher (undocumented)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8471,6 +8543,29 @@ func main() {</td>
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8471
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8543
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<pre style="margin: 0;"> <span id="LC8543" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">args</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="n" style="color: #333;">hydra</span></span>
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8472
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8544
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<pre style="margin: 0;"> <span id="LC8544" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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8545
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<pre style="margin: 0;"> <span id="LC8545" class="line" lang="go"></span>
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8546
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<pre style="margin: 0;">+<span id="LC8546" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// BIOTHINGS EXTRACTION COMMAND GENERATOR</span></span>
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8547
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<pre style="margin: 0;">+<span id="LC8547" class="line" lang="go"></span>
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8548
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<pre style="margin: 0;">+<span id="LC8548" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// -biopath takes a dotted exploration path for BioThings resources (undocumented)</span></span>
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8549
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<pre style="margin: 0;">+<span id="LC8549" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="p">]</span><span class="x"> </span><span class="o" style="font-weight: 600;">==</span><span class="x"> </span><span class="s" style="color: #d14;">"-biopath"</span><span class="x"> </span><span class="p">{</span></span>
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8550
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<pre style="margin: 0;">+<span id="LC8550" class="line" lang="go"></span>
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8551
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<pre style="margin: 0;">+<span id="LC8551" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">args</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="n" style="color: #333;">args</span><span class="p">[</span><span class="m" style="color: #099;">1</span><span class="o" style="font-weight: 600;">:</span><span class="p">]</span></span>
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8552
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<pre style="margin: 0;">+<span id="LC8552" class="line" lang="go"></span>
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8553
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<pre style="margin: 0;">+<span id="LC8553" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">biopath</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="n" style="color: #333;">ProcessBiopath</span><span class="p">(</span><span class="n" style="color: #333;">args</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">isPipe</span><span class="x"> </span><span class="o" style="font-weight: 600;">||</span><span class="x"> </span><span class="n" style="color: #333;">usingFile</span><span class="p">)</span></span>
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8554
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<pre style="margin: 0;">+<span id="LC8554" class="line" lang="go"></span>
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8555
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<pre style="margin: 0;">+<span id="LC8555" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">if</span><span class="x"> </span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">isPipe</span><span class="x"> </span><span class="o" style="font-weight: 600;">&&</span><span class="x"> </span><span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">usingFile</span><span class="x"> </span><span class="p">{</span></span>
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8556
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<pre style="margin: 0;">+<span id="LC8556" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// no piped input, so write output instructions</span></span>
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8557
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<pre style="margin: 0;">+<span id="LC8557" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Printf</span><span class="p">(</span><span class="s" style="color: #d14;">"xtract"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8558" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8558
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<pre style="margin: 0;">+<span id="LC8558" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">for</span><span class="x"> </span><span class="n" style="color: #333;">_</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="x"> </span><span class="o" style="font-weight: 600;">:=</span><span class="x"> </span><span class="k" style="font-weight: 600;">range</span><span class="x"> </span><span class="n" style="color: #333;">biopath</span><span class="x"> </span><span class="p">{</span></span>
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<td class="diff-line-num new old_line" data-linenumber="8474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8559
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<pre style="margin: 0;">+<span id="LC8559" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Printf</span><span class="p">(</span><span class="s" style="color: #d14;">" %s"</span><span class="p">,</span><span class="x"> </span><span class="n" style="color: #333;">str</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="8474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8560
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<pre style="margin: 0;">+<span id="LC8560" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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<td class="diff-line-num new old_line" data-linenumber="8474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8561
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<pre style="margin: 0;">+<span id="LC8561" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Printf</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="8474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8562" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8562
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<pre style="margin: 0;">+<span id="LC8562" class="line" lang="go"><span class="x"> </span><span class="k" style="font-weight: 600;">return</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8563" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8563
</td>
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<pre style="margin: 0;">+<span id="LC8563" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8564
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<pre style="margin: 0;">+<span id="LC8564" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="8565" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8565
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<pre style="margin: 0;">+<span id="LC8565" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// data in pipe, so replace arguments, execute dynamically</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8566
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<pre style="margin: 0;">+<span id="LC8566" class="line" lang="go"><span class="x"> </span><span class="n" style="color: #333;">args</span><span class="x"> </span><span class="o" style="font-weight: 600;">=</span><span class="x"> </span><span class="n" style="color: #333;">biopath</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8567" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8567
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<pre style="margin: 0;">+<span id="LC8567" class="line" lang="go"><span class="x"> </span><span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8568" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8568
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<pre style="margin: 0;">+<span id="LC8568" class="line" lang="go"></span>
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8474
</td>
<td class="diff-line-num new_line" data-linenumber="8569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8569
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<pre style="margin: 0;"> <span id="LC8569" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// ENTREZ2INDEX COMMAND GENERATOR</span></span>
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<td class="diff-line-num old_line" data-linenumber="8475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8475
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<td class="diff-line-num new_line" data-linenumber="8570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8570
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<pre style="margin: 0;"> <span id="LC8570" class="line" lang="go"></span>
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8476
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<td class="diff-line-num new_line" data-linenumber="8571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8571
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<pre style="margin: 0;"> <span id="LC8571" class="line" lang="go"><span class="x"> </span><span class="c" style="color: #998; font-style: italic;">// -e2index shortcut for experimental indexing code (documented in rchive.go)</span></span>
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