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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/epigrass">Debian Med / epigrass</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/epigrass/commit/3b027aa02eb2f6b1d39ce69c598cba46917cc976">3b027aa0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-03-01T23:24:08Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">part 2
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<h4>1 changed file:</h4>
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<a href="#7f2f6c94806ccfebf8d0bf5773ddc6363ae8a793">
debian/patches/py3
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<h4>Changes:</h4>
<li id="7f2f6c94806ccfebf8d0bf5773ddc6363ae8a793">
<a href="https://salsa.debian.org/med-team/epigrass/commit/3b027aa02eb2f6b1d39ce69c598cba46917cc976#7f2f6c94806ccfebf8d0bf5773ddc6363ae8a793"><strong>debian/patches/py3</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,6 +20,17 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> """</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> Library of discrete time Epidemic models</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -49,8 +49,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> Defines a library of discrete time population models</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @cython.locals(geocode='long', modtype='bytes', parallel='bint')</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- def __init__(self, geocode, modtype=b'', parallel=True):</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @cython.locals(geocode='long', modtype='str', parallel='bint')</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ def __init__(self, geocode, modtype=u'', parallel=True):</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> defines which models a given site will use</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> and set variable names accordingly.</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -78,9 +78,9 @@</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"> theta = int(nan_to_num(float(redisclient.get("{}:theta".format(self.geocode)))))</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> npass = int(float(redisclient.get("{}:npass".format(self.geocode))))</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,6 +43,15 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="diff"> values = [float(i) for i in redisclient.lrange("{}:values".format(self.geocode), 0, -1)]</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="diff"> return inits, simstep, totpop, theta, npass, bi, bp, values</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -106,7 +106,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"> # self.parentGraph.epipath.append((self.parentGraph.simstep, self.geocode, self.infector))</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> # TODO: have infector be stated in terms of geocodes</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> </span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-@cython.locals(Type='bytes')</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@cython.locals(Type='str')</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> def selectModel(Type):</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> """</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> Sets the model engine</span>
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35
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55
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -157,7 +157,7 @@</span></span>
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36
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56
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"> </span>
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37
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57
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="diff"> return CustomModel.Model</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1083" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1063,15 +1083,20 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<td class="diff-line-num old_line" data-linenumber="1063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1063
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1083
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<pre style="margin: 0;"> <span id="LC1083" class="line" lang="diff"> return self</span>
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<td class="diff-line-num old_line" data-linenumber="1064" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1064
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<td class="diff-line-num new_line" data-linenumber="1084" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1084
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<pre style="margin: 0;"> <span id="LC1084" class="line" lang="diff"> </span>
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<td class="diff-line-num old_line" data-linenumber="1065" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1065
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<td class="diff-line-num new_line" data-linenumber="1085" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1085
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<pre style="margin: 0;"> <span id="LC1085" class="line" lang="diff"> def createModel(self, modtype='', name='model1', v=[], bi=None, bp=None):</span>
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<td class="diff-line-num old old_line" data-linenumber="1066" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1066
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<td class="diff-line-num new_line old" data-linenumber="1086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1066" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -105,7 +106,7 @@</span></span>
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1067
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<td class="diff-line-num new_line old" data-linenumber="1086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1067" class="line" lang="diff"> """</span>
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<td class="diff-line-num old old_line" data-linenumber="1068" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1068
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<pre style="margin: 0;">-<span id="LC1068" class="line" lang="diff"> # Init = init # deprecated</span>
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1069
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<td class="diff-line-num new_line old" data-linenumber="1086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1069" class="line" lang="diff"> N = self.totpop</span>
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1070
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<td class="diff-line-num new_line old" data-linenumber="1086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1070" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.modtype = modtype</span></span>
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1071
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<pre style="margin: 0;">-<span id="LC1071" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.modtype = modtype.encode('utf-8')</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1072" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1086
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<pre style="margin: 0;">+<span id="LC1086" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -109,11 +110,11 @@</span></span>
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1072
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<td class="diff-line-num new_line" data-linenumber="1087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1087
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<pre style="margin: 0;"> <span id="LC1087" class="line" lang="diff"> self.values = v</span>
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<td class="diff-line-num old_line" data-linenumber="1073" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1073
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<td class="diff-line-num new_line" data-linenumber="1088" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1088
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<pre style="margin: 0;"> <span id="LC1088" class="line" lang="diff"> self.bi = bi</span>
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<td class="diff-line-num old_line" data-linenumber="1074" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1074
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<td class="diff-line-num new_line" data-linenumber="1089" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1089
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<pre style="margin: 0;"> <span id="LC1089" class="line" lang="diff"> self.bp = bp</span>
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<td class="diff-line-num new old_line" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1090
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<pre style="margin: 0;">+<span id="LC1090" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.model = epimodels.Epimodel(self.geocode, modtype)</span></span>
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1091
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<pre style="margin: 0;">+<span id="LC1091" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.model = epimodels.Epimodel(self.geocode, self.modtype)</span></span>
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1092
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<pre style="margin: 0;">+<span id="LC1092" class="line" lang="diff"> self.vnames = epimodels.vnames[modtype]</span>
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1093
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<pre style="margin: 0;">+<span id="LC1093" class="line" lang="diff"> try:</span>
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1094
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<pre style="margin: 0;">+<span id="LC1094" class="line" lang="diff"> # self.ts = [[bi[vn.lower()] for vn in self.vnames]]</span>
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1095
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<pre style="margin: 0;">+<span id="LC1095" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.ts.append(list(bi.values())) # This is fine since bi is an OrderedDict</span></span>
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1096
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<pre style="margin: 0;">+<span id="LC1096" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.ts.append(bi.values()) # This is fine since bi is an OrderedDict</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1097
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<pre style="margin: 0;">+<span id="LC1097" class="line" lang="diff"> except KeyError as ke:</span>
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1098
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<pre style="margin: 0;">+<span id="LC1098" class="line" lang="diff"> if self.vnames == ['Exposed', 'Infectious', 'Susceptible']:</span>
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1099
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<pre style="margin: 0;">+<span id="LC1099" class="line" lang="diff"> self.ts = [[bi[vn] for vn in ['e', 'i', 's']]]</span>
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1075
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1100
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<pre style="margin: 0;"> <span id="LC1100" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1155,9 +1156,9 @@</span></span>
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1076
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1101
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<pre style="margin: 0;"> <span id="LC1101" class="line" lang="diff"> Length -- Length in kilometers of this route</span>
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1077
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1102
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<pre style="margin: 0;"> <span id="LC1102" class="line" lang="diff"> """</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1084" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1084,18 +1109,6 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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1084
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1109
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<pre style="margin: 0;"> <span id="LC1109" class="line" lang="diff"> self.dest = dest</span>
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1085
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1110
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<pre style="margin: 0;"> <span id="LC1110" class="line" lang="diff"> self.source = source</span>
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1086
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1111
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<pre style="margin: 0;"> <span id="LC1111" class="line" lang="diff"> self.sites = [source, dest]</span>
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1087
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<pre style="margin: 0;">-<span id="LC1087" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1207,9 +1208,9 @@</span></span>
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1088
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<pre style="margin: 0;">-<span id="LC1088" class="line" lang="diff"> self.name = graph_name</span>
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1089
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<pre style="margin: 0;">-<span id="LC1089" class="line" lang="diff"> self.digraph = digraph</span>
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1090
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<pre style="margin: 0;">-<span id="LC1090" class="line" lang="diff"> self.site_dict = {} #geocode as keys</span>
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1091
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<pre style="margin: 0;">-<span id="LC1091" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.site_list = property(fget=lambda self: self.site_dict.values()) #only for backwards compatibility</span></span>
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1092
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<pre style="margin: 0;">-<span id="LC1092" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.site_list = property(fget=lambda self: list(self.site_dict.values())) #only for backwards compatibility</span></span>
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1093
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<pre style="margin: 0;">-<span id="LC1093" class="line" lang="diff"> self.edge_dict = {} #geocode tuple as key</span>
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1094
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<td class="diff-line-num new_line old" data-linenumber="1112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1094" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.edge_list = property(fget=lambda self: self.edge_dict.values()) #only for backwards compatibility</span></span>
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1095
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<pre style="margin: 0;">-<span id="LC1095" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.edge_list = property(fget=lambda self: list(self.edge_dict.values())) #only for backwards compatibility</span></span>
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1096
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<pre style="margin: 0;">-<span id="LC1096" class="line" lang="diff"> self.speed = 0 # speed of the transportation system</span>
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1097
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<pre style="margin: 0;">-<span id="LC1097" class="line" lang="diff"> self.simstep = 1 #current step in the simulation</span>
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1098
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<pre style="margin: 0;">-<span id="LC1098" class="line" lang="diff"> self.maxstep = 100 #maximum number of steps in the simulation</span>
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1099
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1112
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<pre style="margin: 0;"> <span id="LC1112" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1251,7 +1252,7 @@</span></span>
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1100
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1113
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<pre style="margin: 0;"> <span id="LC1113" class="line" lang="diff"> """</span>
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1101
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1114
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<pre style="margin: 0;"> <span id="LC1114" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1133,27 +1146,15 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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1133
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1146
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<pre style="margin: 0;"> <span id="LC1146" class="line" lang="diff"> </span>
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<td class="diff-line-num old_line" data-linenumber="1134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1134
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<td class="diff-line-num new_line" data-linenumber="1147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1147
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<pre style="margin: 0;"> <span id="LC1147" class="line" lang="diff"> return sitenames</span>
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1135
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<td class="diff-line-num new_line" data-linenumber="1148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1148
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<pre style="margin: 0;"> <span id="LC1148" class="line" lang="diff"> </span>
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<td class="diff-line-num old old_line" data-linenumber="1136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1136
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<pre style="margin: 0;">-<span id="LC1136" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1512,<span class="idiff left right">9 +1512,9</span> @@</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1149
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<pre style="margin: 0;">+<span id="LC1149" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1512,<span class="idiff left right">7 +1512,7</span> @@</span></span>
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1137
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1150
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<pre style="margin: 0;"> <span id="LC1150" class="line" lang="diff"> dm = zeros((d, d), float)</span>
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<td class="diff-line-num old_line" data-linenumber="1138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1138
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1151
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<pre style="margin: 0;"> <span id="LC1151" class="line" lang="diff"> ap = zeros((d, d), float)</span>
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1139
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1152
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<pre style="margin: 0;"> <span id="LC1152" class="line" lang="diff"> i = 0</span>
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1140
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1153
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<pre style="margin: 0;"> <span id="LC1153" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for sitei in g.iterkeys():</span></span>
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1141
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1154
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<pre style="margin: 0;"> <span id="LC1154" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for sitei in g.keys():</span></span>
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1142
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1155
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<pre style="margin: 0;"> <span id="LC1155" class="line" lang="diff"> j = 0</span>
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1143
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<pre style="margin: 0;">-<span id="LC1143" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for sitej in g.keys()[:i]: #calculates only the lower triangle</span></span>
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1144
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<pre style="margin: 0;">-<span id="LC1144" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for sitej in list(g.keys())[:i]: #calculates only the lower triangle</span></span>
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1156
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<pre style="margin: 0;">+<span id="LC1156" class="line" lang="diff"> for sitej in g.keys()[:i]: #calculates only the lower triangle</span>
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1145
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1157
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<pre style="margin: 0;"> <span id="LC1157" class="line" lang="diff"> sp = self.shortestPath(g, sitei, sitej)</span>
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1146
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<pre style="margin: 0;">-<span id="LC1146" class="line" lang="diff"> lsp = self.getShortestPathLength(sitei, sp) #length of the shortestpath</span>
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1147
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<pre style="margin: 0;">-<span id="LC1147" class="line" lang="diff"> self.shortPathList.append((sitei, sitej, sp, lsp))</span>
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1148
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<pre style="margin: 0;">-<span id="LC1148" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1557,7 +1557,7 @@</span></span>
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1149
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<pre style="margin: 0;">-<span id="LC1149" class="line" lang="diff"> pass</span>
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1150
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<pre style="margin: 0;">-<span id="LC1150" class="line" lang="diff"> if not self.graphdict: #this generates site neighbors lists</span>
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1151
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<pre style="margin: 0;">-<span id="LC1151" class="line" lang="diff"> self.getGraphdict()</span>
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1152
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<pre style="margin: 0;">-<span id="LC1152" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- site_list = self.site_dict.values()</span></span>
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1153
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<pre style="margin: 0;">-<span id="LC1153" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ site_list = list(self.site_dict.values())</span></span>
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1154
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<pre style="margin: 0;">-<span id="LC1154" class="line" lang="diff"> nsites = len(self.site_dict)</span>
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1155
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<pre style="margin: 0;">-<span id="LC1155" class="line" lang="diff"> cm = zeros((nsites, nsites), float)</span>
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<td class="diff-line-num old old_line" data-linenumber="1156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1156
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<pre style="margin: 0;">-<span id="LC1156" class="line" lang="diff"> for i, sitei in enumerate(site_list):</span>
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1157
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1158
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<pre style="margin: 0;"> <span id="LC1158" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1636,7 +1636,7 @@</span></span>
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1158
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1159
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<pre style="margin: 0;"> <span id="LC1159" class="line" lang="diff"> The weight of all nodes in the graph (W(G)) is the summation</span>
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1159
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1160
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1160" class="line" lang="diff"> of each node's order (o) multiplied by 2 for all orders above 1.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1221,15 +1222,6 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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1221
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1222
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<pre style="margin: 0;"> <span id="LC1222" class="line" lang="diff"> self.__heap.sort() # builtin sort likely faster than O(n) heapify</span>
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1222
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1223
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<pre style="margin: 0;"> <span id="LC1223" class="line" lang="diff"> else:</span>
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1223
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1224
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<pre style="margin: 0;"> <span id="LC1224" class="line" lang="diff"> newPair = (val, key)</span>
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1224
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<pre style="margin: 0;">-<span id="LC1224" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1953,7 +1953,7 @@</span></span>
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1225
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<pre style="margin: 0;">-<span id="LC1225" class="line" lang="diff"> heap[insertionPoint] = newPair</span>
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1226
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<pre style="margin: 0;">-<span id="LC1226" class="line" lang="diff"> </span>
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1227
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<pre style="margin: 0;">-<span id="LC1227" class="line" lang="diff"> def update(self, other):</span>
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1228
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<pre style="margin: 0;">-<span id="LC1228" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- for key in other.keys():</span></span>
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1229
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<pre style="margin: 0;">-<span id="LC1229" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ for key in list(other.keys()):</span></span>
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1230
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<pre style="margin: 0;">-<span id="LC1230" class="line" lang="diff"> self[key] = other[key]</span>
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1231
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<pre style="margin: 0;">-<span id="LC1231" class="line" lang="diff"> </span>
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1232
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<pre style="margin: 0;">-<span id="LC1232" class="line" lang="diff"> def setdefault(self, key, val):</span>
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1233
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1225
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<pre style="margin: 0;"> <span id="LC1225" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- epigrass.orig/Epigrass/primitives.py</span></span>
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<td class="diff-line-num old_line" data-linenumber="1234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1234
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<td class="diff-line-num new_line" data-linenumber="1226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1226
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<pre style="margin: 0;"> <span id="LC1226" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ epigrass/Epigrass/primitives.py</span></span>
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<td class="diff-line-num old_line" data-linenumber="1235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1235
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<td class="diff-line-num new_line" data-linenumber="1227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1227
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<pre style="margin: 0;"> <span id="LC1227" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -9,7 +9,16 @@</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1241,7 +1233,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<td class="diff-line-num old_line" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1241
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<td class="diff-line-num new_line" data-linenumber="1233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1233
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<pre style="margin: 0;"> <span id="LC1233" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gluNewQuadric, glColor4f, glPushMatrix, glTranslatef, glBegin, GL_POINTS,</span></span>
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<td class="diff-line-num old_line" data-linenumber="1242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1242
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<td class="diff-line-num new_line" data-linenumber="1234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1234
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<pre style="margin: 0;"> <span id="LC1234" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ glVertex3f, glEnd, glPopMatrix, GLU_FILL, glRotatef, gluQuadricDrawStyle,</span></span>
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<td class="diff-line-num old_line" data-linenumber="1243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1243
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<td class="diff-line-num new_line" data-linenumber="1235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1235
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<pre style="margin: 0;"> <span id="LC1235" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gluDisk, gluPartialDisk, glEnable, GL_LINE_STIPPLE, glLineStipple,</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1244
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<td class="diff-line-num new_line old" data-linenumber="1236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1244" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ glLineWidth, GL_LINE_LOOP, GL_QUADS, GL_POLYGON, GL_TRIANGLES, glDisable</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1236
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<pre style="margin: 0;">+<span id="LC1236" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ glLineWidth, GL_LINE_LOOP, GL_QUADS, GL_POLYGON, GL_TRIANGLES, glDisable<span class="idiff left right">,</span></span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1245
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<td class="diff-line-num new_line" data-linenumber="1237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1237
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<pre style="margin: 0;"> <span id="LC1237" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ GLfloat, GL_LINES, glVertex2i, GLU_MAP1_TRIM_2, gluNewNurbsRenderer,</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1246
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<td class="diff-line-num new_line" data-linenumber="1238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1238
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<pre style="margin: 0;"> <span id="LC1238" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gluNurbsProperty, GLU_SAMPLING_TOLERANCE, GLU_DISPLAY_MODE, gluBeginCurve, </span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1247
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<td class="diff-line-num new_line" data-linenumber="1239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1239
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<pre style="margin: 0;"> <span id="LC1239" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gluNurbsCurve, GL_MAP1_VERTEX_3, gluEndCurve, GL_BLEND, glBlendFunc, </span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1259,6 +1251,15 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<td class="diff-line-num old_line" data-linenumber="1259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1259
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<td class="diff-line-num new_line" data-linenumber="1251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1251
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<pre style="margin: 0;"> <span id="LC1251" class="line" lang="diff"> return</span>
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<td class="diff-line-num old_line" data-linenumber="1260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1260
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<td class="diff-line-num new_line" data-linenumber="1252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1252
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<pre style="margin: 0;"> <span id="LC1252" class="line" lang="diff"> self.members = olist</span>
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<td class="diff-line-num old_line" data-linenumber="1261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1261
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<td class="diff-line-num new_line" data-linenumber="1253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1253
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<pre style="margin: 0;"> <span id="LC1253" class="line" lang="diff"> def getX(self) : </span>
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<td class="diff-line-num new old_line" data-linenumber="1262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1254
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<pre style="margin: 0;">+<span id="LC1254" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -458,7 +467,7 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1255
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<pre style="margin: 0;">+<span id="LC1255" class="line" lang="diff"> right = property(getRight, setRight)</span>
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<td class="diff-line-num new old_line" data-linenumber="1262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1256
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<pre style="margin: 0;">+<span id="LC1256" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="1257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1257
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<pre style="margin: 0;">+<span id="LC1257" class="line" lang="diff"> def setBottom(self,x):</span>
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<td class="diff-line-num new old_line" data-linenumber="1262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1258
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<pre style="margin: 0;">+<span id="LC1258" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.rect = self.x, y-self.width*0.5, self.width, self.height</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1259
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<pre style="margin: 0;">+<span id="LC1259" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.rect = self.x, self.y-self.width*0.5, self.width, self.height</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1260
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<pre style="margin: 0;">+<span id="LC1260" class="line" lang="diff"> def getBottom(self): return self.rect[3]</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1261
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<pre style="margin: 0;">+<span id="LC1261" class="line" lang="diff"> bottom = property(getBottom, setBottom)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1262
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<pre style="margin: 0;">+<span id="LC1262" class="line" lang="diff"> </span>
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1262
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1263
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<pre style="margin: 0;"> <span id="LC1263" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -506,7 +515,7 @@</span></span>
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1263
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1264
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<pre style="margin: 0;"> <span id="LC1264" class="line" lang="diff"> win.dispatch_events()</span>
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1264
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1265
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<pre style="margin: 0;"> <span id="LC1265" class="line" lang="diff"> mvmt = random.randint(-10, 10)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2322,6 +2323,17 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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2322
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2323
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<pre style="margin: 0;"> <span id="LC2323" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.actionGML.setText(QtGui.QApplication.translate("MainWindow", "GML", None, QtGui.QApplication.UnicodeUTF8))</span></span>
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2323
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2324
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<pre style="margin: 0;"> <span id="LC2324" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.actionPajek.setText(QtGui.QApplication.translate("MainWindow", "Pajek", None, QtGui.QApplication.UnicodeUTF8))</span></span>
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2324
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2325
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<pre style="margin: 0;"> <span id="LC2325" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- self.actionYAML.setText(QtGui.QApplication.translate("MainWindow", "YAML", None, QtGui.QApplication.UnicodeUTF8))</span></span>
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2326
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<pre style="margin: 0;">+<span id="LC2326" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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2327
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<pre style="margin: 0;">+<span id="LC2327" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import epigrass_rc</span></span>
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2328
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<pre style="margin: 0;">+<span id="LC2328" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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2329
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<pre style="margin: 0;">+<span id="LC2329" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-if __name__ == "__main__":</span></span>
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2330
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<pre style="margin: 0;">+<span id="LC2330" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- import sys</span></span>
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2331
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<pre style="margin: 0;">+<span id="LC2331" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- app = QtGui.QApplication(sys.argv)</span></span>
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2332
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<pre style="margin: 0;">+<span id="LC2332" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- MainWindow = QtGui.QMainWindow()</span></span>
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2333
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<pre style="margin: 0;">+<span id="LC2333" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ui = Ui_MainWindow()</span></span>
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2334
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<pre style="margin: 0;">+<span id="LC2334" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ui.setupUi(MainWindow)</span></span>
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2335
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<pre style="margin: 0;">+<span id="LC2335" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- MainWindow.show()</span></span>
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2336
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<pre style="margin: 0;">+<span id="LC2336" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sys.exit(app.exec_())</span></span>
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2325
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2337
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<pre style="margin: 0;"> <span id="LC2337" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.dataPanel.setTabText(self.dataPanel.indexOf(self.Edges), _translate("MainWindow", "Edges"))</span></span>
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2326
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2338
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<pre style="margin: 0;"> <span id="LC2338" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.menuFile.setTitle(_translate("MainWindow", "&File"))</span></span>
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<td class="diff-line-num old_line" data-linenumber="2327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2327
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<td class="diff-line-num new_line" data-linenumber="2339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2339
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<pre style="margin: 0;"> <span id="LC2339" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.menu_Export.setTitle(_translate("MainWindow", "&Export"))</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2343,17 +2355,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<td class="diff-line-num old_line" data-linenumber="2343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2343
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2355
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<pre style="margin: 0;"> <span id="LC2355" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.actionPajek.setText(_translate("MainWindow", "Pajek"))</span></span>
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<td class="diff-line-num old_line" data-linenumber="2344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2344
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2356
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<pre style="margin: 0;"> <span id="LC2356" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.actionYAML.setText(_translate("MainWindow", "YAML"))</span></span>
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<pre style="margin: 0;"> <span id="LC2357" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC2346" class="line" lang="diff"> import epigrass_rc</span>
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<pre style="margin: 0;">-<span id="LC2347" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">-<span id="LC2348" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-if __name__ == "__main__":</span></span>
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<pre style="margin: 0;">-<span id="LC2349" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- import sys</span></span>
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<pre style="margin: 0;">-<span id="LC2350" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- app = QtGui.QApplication(sys.argv)</span></span>
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<pre style="margin: 0;">-<span id="LC2351" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- MainWindow = QtGui.QMainWindow()</span></span>
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<pre style="margin: 0;">-<span id="LC2352" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ui = Ui_MainWindow()</span></span>
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<pre style="margin: 0;">-<span id="LC2353" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ui.setupUi(MainWindow)</span></span>
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<pre style="margin: 0;">-<span id="LC2354" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- MainWindow.show()</span></span>
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<pre style="margin: 0;">-<span id="LC2355" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sys.exit(app.exec_())</span></span>
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<pre style="margin: 0;">-<span id="LC2356" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC2358" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from . import epigrass_rc</span></span>
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2359
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<pre style="margin: 0;"> <span id="LC2359" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- epigrass.orig/Epigrass/dataObject.py</span></span>
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2358
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2360
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<pre style="margin: 0;"> <span id="LC2360" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ epigrass/Epigrass/dataObject.py</span></span>
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2359
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2361
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<pre style="margin: 0;"> <span id="LC2361" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -62,13 +62,13 @@</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2758" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2760" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2758,8 +2760,8 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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2758
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<pre style="margin: 0;"> <span id="LC2760" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from PyQt4 import QtCore, QtGui</span></span>
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2761
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<pre style="margin: 0;"> <span id="LC2761" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from PyQt4.QtGui import QMainWindow</span></span>
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2760
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2762
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<pre style="margin: 0;"> <span id="LC2762" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from PyQt4.QtCore import pyqtSignature</span></span>
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<pre style="margin: 0;">-<span id="LC2761" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from PyQt5 import QtCore, QtGui</span></span>
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2762
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<pre style="margin: 0;">-<span id="LC2762" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from PyQt5.Qt<span class="idiff left right">Gui</span> import QMainWindow</span></span>
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<pre style="margin: 0;">+<span id="LC2763" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from PyQt5 import QtCore, QtGui<span class="idiff left right">, QtWidgets</span></span></span>
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2764
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<pre style="margin: 0;">+<span id="LC2764" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from PyQt5.Qt<span class="idiff left right">Widgets</span> import QMainWindow</span></span>
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2763
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2765
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<pre style="margin: 0;"> <span id="LC2765" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from PyQt5.QtCore import pyqtSlot</span></span>
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2764
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2766
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<pre style="margin: 0;"> <span id="LC2766" class="line" lang="diff"> from types import MethodType</span>
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2765
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2767
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<pre style="margin: 0;"> <span id="LC2767" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from Ui_neteditor import Ui_MainWindow</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2820" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2822" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2820,7 +2822,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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2820
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2822
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<pre style="margin: 0;"> <span id="LC2822" class="line" lang="diff"> pass</span>
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<td class="diff-line-num old_line" data-linenumber="2821" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2821
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2823
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<pre style="margin: 0;"> <span id="LC2823" class="line" lang="diff"> </span>
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2822
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<td class="diff-line-num new_line" data-linenumber="2824" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2824
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<pre style="margin: 0;"> <span id="LC2824" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @pyqtSignature("")</span></span>
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2823
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<pre style="margin: 0;">-<span id="LC2823" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @pyqtSlot</span></span>
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2825
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<pre style="margin: 0;">+<span id="LC2825" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @pyqtSlot<span class="idiff left right">()</span></span></span>
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2824
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2826
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<pre style="margin: 0;"> <span id="LC2826" class="line" lang="diff"> def on_edgeTable_itemSelectionChanged(self):</span>
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2825
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<td class="diff-line-num new_line" data-linenumber="2827" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2827
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<pre style="margin: 0;"> <span id="LC2827" class="line" lang="diff"> """</span>
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2826
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2828
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<pre style="margin: 0;"> <span id="LC2828" class="line" lang="diff"> Slot documentation goes here.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3318,16 +3320,18 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<td class="diff-line-num old_line" data-linenumber="3318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3318
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3320
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<pre style="margin: 0;"> <span id="LC3320" class="line" lang="diff"> # app.setMainWidget(w)</span>
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<td class="diff-line-num old_line" data-linenumber="3319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3319
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<td class="diff-line-num new_line" data-linenumber="3321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3321
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<pre style="margin: 0;"> <span id="LC3321" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- epigrass.orig/Epigrass/report.py</span></span>
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3320
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3322
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<pre style="margin: 0;"> <span id="LC3322" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ epigrass/Epigrass/report.py</span></span>
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3321
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<pre style="margin: 0;">-<span id="LC3321" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2,7 +2,<span class="idiff left right">7</span> @@</span></span>
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3323
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<pre style="margin: 0;">+<span id="LC3323" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2,7 +2,<span class="idiff left right">9</span> @@</span></span>
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3322
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3324
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<pre style="margin: 0;"> <span id="LC3324" class="line" lang="diff"> This module generates a report of the network simulation model</span>
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3323
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3325
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<pre style="margin: 0;"> <span id="LC3325" class="line" lang="diff"> using LaTeX.</span>
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3324
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3326
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<pre style="margin: 0;"> <span id="LC3326" class="line" lang="diff"> """</span>
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3325
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3327
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<pre style="margin: 0;"> <span id="LC3327" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import os, sys, commands, string, time, matplotlib, codecs</span></span>
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3326
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3328
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<pre style="margin: 0;"> <span id="LC3328" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import os, sys, subprocess, string, time, matplotlib, codecs</span></span>
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3329
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<pre style="margin: 0;">+<span id="LC3329" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from matplotlib.pyplot import close, savefig, bar, ylabel, xlabel, colorbar, title, pcolor, hist</span></span>
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3330
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<pre style="margin: 0;">+<span id="LC3330" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+from numpy import mean</span></span>
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3327
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3331
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<pre style="margin: 0;"> <span id="LC3331" class="line" lang="diff"> #matplotlib.use("Agg")</span>
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3332
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<pre style="margin: 0;"> <span id="LC3332" class="line" lang="diff"> </span>
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3329
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3333
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<pre style="margin: 0;"> <span id="LC3333" class="line" lang="diff"> #from pylab import *</span>
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<pre style="margin: 0;">-<span id="LC3330" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -24,8 +2<span class="idiff left right">4</span>,8 @@</span></span>
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3334
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<pre style="margin: 0;">+<span id="LC3334" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -24,8 +2<span class="idiff left right">6</span>,8 @@</span></span>
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3335
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<pre style="margin: 0;"> <span id="LC3335" class="line" lang="diff"> """</span>
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3332
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3336
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<pre style="margin: 0;"> <span id="LC3336" class="line" lang="diff"> def __init__(self, simulation):</span>
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3333
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3337
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<pre style="margin: 0;"> <span id="LC3337" class="line" lang="diff"> self.workdir = os.getcwd()</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3342" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3338,7 +3342,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3338
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3342
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<pre style="margin: 0;"> <span id="LC3342" class="line" lang="diff"> if pltx.startswith('which:'):</span>
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3339
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3343
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<pre style="margin: 0;"> <span id="LC3343" class="line" lang="diff"> self.latex = 0</span>
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3340
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3344
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<pre style="margin: 0;"> <span id="LC3344" class="line" lang="diff"> else:</span>
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3341
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<pre style="margin: 0;">-<span id="LC3341" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -348,12 +3<span class="idiff left right">48</span>,12 @@</span></span>
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<pre style="margin: 0;">+<span id="LC3345" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -348,12 +3<span class="idiff left right">50</span>,12 @@</span></span>
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3346
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<pre style="margin: 0;"> <span id="LC3346" class="line" lang="diff"> cuminc=[sum(incidence[:i]) for i in range(len(incidence))]</span>
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3347
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<pre style="margin: 0;"> <span id="LC3347" class="line" lang="diff"> </span>
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3348
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<pre style="margin: 0;"> <span id="LC3348" class="line" lang="diff"> infc = site.thetahist</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3357" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3353,7 +3357,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3353
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3357
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<pre style="margin: 0;"> <span id="LC3357" class="line" lang="diff"> xlabel('Time')</span>
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3354
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3358
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<pre style="margin: 0;"> <span id="LC3358" class="line" lang="diff"> ylabel('Infectious individuous')</span>
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3355
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3359
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<pre style="margin: 0;"> <span id="LC3359" class="line" lang="diff"> savefig('inf.png')</span>
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3356
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<pre style="margin: 0;">-<span id="LC3356" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -382,7 +38<span class="idiff left right">2</span>,7 @@</span></span>
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3360
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<pre style="margin: 0;">+<span id="LC3360" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -382,7 +38<span class="idiff left right">4</span>,7 @@</span></span>
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3357
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3361
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<pre style="margin: 0;"> <span id="LC3361" class="line" lang="diff"> """</span>
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3358
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3362
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<pre style="margin: 0;"> <span id="LC3362" class="line" lang="diff"> epistats = self.sim.g.getEpistats()</span>
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3359
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3363
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<pre style="margin: 0;"> <span id="LC3363" class="line" lang="diff"> cumcities = [sum(epistats[1][:i]) for i in range(len(epistats[1]))]</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3362,7 +3366,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3362
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3366
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<pre style="margin: 0;"> <span id="LC3366" class="line" lang="diff"> ylabel=('Number of infected cities')</span>
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3363
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3367
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<pre style="margin: 0;"> <span id="LC3367" class="line" lang="diff"> xlabel=('Time')</span>
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3364
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3368
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<pre style="margin: 0;"> <span id="LC3368" class="line" lang="diff"> savefig('sp.png')</span>
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3365
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<pre style="margin: 0;">-<span id="LC3365" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -439,7 +4<span class="idiff left right">39</span>,7 @@</span></span>
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3369
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<pre style="margin: 0;">+<span id="LC3369" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -439,7 +4<span class="idiff left right">41</span>,7 @@</span></span>
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3366
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3370
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<pre style="margin: 0;"> <span id="LC3370" class="line" lang="diff"> Path = Path.replace(' ','-')</span>
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3367
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3371
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<pre style="margin: 0;"> <span id="LC3371" class="line" lang="diff"> os.system('mkdir '+Path)</span>
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3368
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3372
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<pre style="margin: 0;"> <span id="LC3372" class="line" lang="diff"> os.chdir(Path)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3371,7 +3375,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3371
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3375
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<pre style="margin: 0;"> <span id="LC3375" class="line" lang="diff"> </span>
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3372
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3376
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<pre style="margin: 0;"> <span id="LC3376" class="line" lang="diff"> sitehead = r"""</span>
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3373
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3377
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<pre style="margin: 0;"> <span id="LC3377" class="line" lang="diff"> \chapter{Site Specific Analyses}"</span>
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3374
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<pre style="margin: 0;">-<span id="LC3374" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -476,7 +47<span class="idiff left right">6</span>,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC3378" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -476,7 +47<span class="idiff left right">8</span>,7 @@</span></span>
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3379
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<pre style="margin: 0;"> <span id="LC3379" class="line" lang="diff"> latexsrc += self.siteReport(site)</span>
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3376
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3380
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<pre style="margin: 0;"> <span id="LC3380" class="line" lang="diff"> latexsrc += tail</span>
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3377
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3381
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<pre style="margin: 0;"> <span id="LC3381" class="line" lang="diff"> timer = time.clock()-start</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3380,7 +3384,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3380
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3384
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<pre style="margin: 0;"> <span id="LC3384" class="line" lang="diff"> if self.sim.gui:</span>
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3381
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3385
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<pre style="margin: 0;"> <span id="LC3385" class="line" lang="diff"> self.sim.gui.textEdit1.insertParagraph('Time to generate Network report: %s seconds.'% timer,-1)</span>
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3382
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3386
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<pre style="margin: 0;"> <span id="LC3386" class="line" lang="diff"> self.savenBuild('Netreport',latexsrc)</span>
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3383
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<pre style="margin: 0;">-<span id="LC3383" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -489,7 +4<span class="idiff left right">89</span>,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC3387" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -489,7 +4<span class="idiff left right">91</span>,7 @@</span></span>
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3384
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<pre style="margin: 0;"> <span id="LC3388" class="line" lang="diff"> latexsrc += self.genSiteEpi(site)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3385
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<td class="diff-line-num new_line" data-linenumber="3389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3389
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3389" class="line" lang="diff"> latexsrc += tail</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3386
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<td class="diff-line-num new_line" data-linenumber="3390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3390
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<pre style="margin: 0;"> <span id="LC3390" class="line" lang="diff"> timer = time.clock()-start</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3389,7 +3393,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<td class="diff-line-num old_line" data-linenumber="3389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3389
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3393
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3393" class="line" lang="diff"> if self.sim.gui:</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3390
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<td class="diff-line-num new_line" data-linenumber="3394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3394
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3394" class="line" lang="diff"> self.sim.gui.textEdit1.insertParagraph('Time to generate epidemiological report: %s seconds.'% timer,-1)</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="3391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3391
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<td class="diff-line-num new_line" data-linenumber="3395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3395
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3395" class="line" lang="diff"> self.savenBuild('epireport',latexsrc)</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="3392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3392
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<td class="diff-line-num new_line old" data-linenumber="3396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3392" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -508,7 +5<span class="idiff left right">08</span>,7 @@</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="3396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3396
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<pre style="margin: 0;">+<span id="LC3396" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -508,7 +5<span class="idiff left right">10</span>,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3393
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<td class="diff-line-num new_line" data-linenumber="3397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3397
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3397" class="line" lang="diff"> latexsrc += self.genSiteEpi(site)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3394
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<td class="diff-line-num new_line" data-linenumber="3398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3398
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3398" class="line" lang="diff"> latexsrc += tail</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3395
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<td class="diff-line-num new_line" data-linenumber="3399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3399
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3399" class="line" lang="diff"> timer = time.clock()-start</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3398,7 +3402,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="3398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3398
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<td class="diff-line-num new_line" data-linenumber="3402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3402
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3402" class="line" lang="diff"> if self.sim.gui:</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3399
</td>
<td class="diff-line-num new_line" data-linenumber="3403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3403
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3403" class="line" lang="diff"> self.sim.gui.textEdit1.insertParagraph('Time to generate full report: %s seconds.'% timer,-1)</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="3400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3400
</td>
<td class="diff-line-num new_line" data-linenumber="3404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3404
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3404" class="line" lang="diff"> self.savenBuild('fullreport',latexsrc)</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="3401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3401
</td>
<td class="diff-line-num new_line old" data-linenumber="3405" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3401" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -520,7 +52<span class="idiff left right">0</span>,7 @@</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="3405" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3405
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<pre style="margin: 0;">+<span id="LC3405" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -520,7 +52<span class="idiff left right">2</span>,7 @@</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="3402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3402
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<td class="diff-line-num new_line" data-linenumber="3406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3406
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3406" class="line" lang="diff"> if self.sim.gui:</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3403
</td>
<td class="diff-line-num new_line" data-linenumber="3407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3407
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3407" class="line" lang="diff"> self.sim.gui.textEdit1.insertParagraph(string,-1)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3404
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<td class="diff-line-num new_line" data-linenumber="3408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3408
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3408" class="line" lang="diff"> else:</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3409,7 +3413,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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<td class="diff-line-num old_line" data-linenumber="3409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3409
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<td class="diff-line-num new_line" data-linenumber="3413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3413
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<pre style="margin: 0;"> <span id="LC3413" class="line" lang="diff"> """</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3410
</td>
<td class="diff-line-num new_line" data-linenumber="3414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3414
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3414" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- epigrass.orig/Epigrass/spread.py</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="3411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3411
</td>
<td class="diff-line-num new_line" data-linenumber="3415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3415
</td>
<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3415" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ epigrass/Epigrass/spread.py</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="3412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3412
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<td class="diff-line-num new_line old" data-linenumber="3416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3412" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,1<span class="idiff left right">0 +1,6</span> @@</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC3416" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,1<span class="idiff left right">4 +1,8</span> @@</span></span>
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3417
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<pre style="margin: 0;"> <span id="LC3417" class="line" lang="diff"> #coding: utf8</span>
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3418
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<pre style="margin: 0;"> <span id="LC3418" class="line" lang="diff"> #spread display and analisys</span>
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3415
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3419
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<pre style="margin: 0;"> <span id="LC3419" class="line" lang="diff"> #</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3417,10 +3421,14 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3417
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3421
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<pre style="margin: 0;"> <span id="LC3421" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-# from PyQt4.QtGui import *</span></span>
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3418
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3422
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<pre style="margin: 0;"> <span id="LC3422" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#except ImportError: </span></span>
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3419
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3423
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<pre style="margin: 0;"> <span id="LC3423" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-# print "Please install PyQT 4"</span></span>
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3420
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<pre style="margin: 0;">-<span id="LC3420" class="line" lang="diff"><span class="idiff left right"> </span>#from qt import *</span>
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3424
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<pre style="margin: 0;">+<span id="LC3424" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;"><span class="idiff left right">-</span>#from qt import *</span></span>
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3421
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3425
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<pre style="margin: 0;"> <span id="LC3425" class="line" lang="diff"> from xml.dom import minidom, Node</span>
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3426
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<pre style="margin: 0;"> <span id="LC3426" class="line" lang="diff"> import os, json</span>
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3423
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<pre style="margin: 0;">-<span id="LC3423" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -38,7 +34,7 @@</span></span>
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3427
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<pre style="margin: 0;">+<span id="LC3427" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from numpy import *</span></span>
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3428
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<pre style="margin: 0;">+<span id="LC3428" class="line" lang="diff"> import networkx as nx</span>
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3429
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<pre style="margin: 0;">+<span id="LC3429" class="line" lang="diff"> from networkx.readwrite import json_graph</span>
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3430
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<pre style="margin: 0;">+<span id="LC3430" class="line" lang="diff"> import codecs</span>
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3431
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<pre style="margin: 0;">+<span id="LC3431" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -38,7 +32,7 @@</span></span>
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3432
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<pre style="margin: 0;"> <span id="LC3432" class="line" lang="diff"> infected = self.g.site_dict[n[1]]</span>
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3433
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<pre style="margin: 0;"> <span id="LC3433" class="line" lang="diff"> infectors = n[-1]</span>
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3426
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3434
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<pre style="margin: 0;"> <span id="LC3434" class="line" lang="diff"> self.nxg.add_node(n[1],name=infected.sitename,time=n[0])</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3429,7 +3437,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3437
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<pre style="margin: 0;"> <span id="LC3437" class="line" lang="diff"> self.nxg.add_edge(n[1],i.geocode,weight=float(c))</span>
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3430
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3438
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<pre style="margin: 0;"> <span id="LC3438" class="line" lang="diff"> </span>
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3439
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<pre style="margin: 0;"> <span id="LC3439" class="line" lang="diff"> </span>
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3432
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<pre style="margin: 0;">-<span id="LC3432" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -62,7 +5<span class="idiff left right">8</span>,7 @@</span></span>
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<td class="diff-line-num new old_line" data-linenumber="3433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="3440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3440
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<pre style="margin: 0;">+<span id="LC3440" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -62,7 +5<span class="idiff left right">6</span>,7 @@</span></span>
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3433
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<td class="diff-line-num new_line" data-linenumber="3441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3441
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<pre style="margin: 0;"> <span id="LC3441" class="line" lang="diff"> Spread.writeENGML(f,tree) #calling as a class method</span>
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<td class="diff-line-num old_line" data-linenumber="3434" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3434
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3442
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<pre style="margin: 0;"> <span id="LC3442" class="line" lang="diff"> f.write(']')</span>
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<td class="diff-line-num old_line" data-linenumber="3435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3435
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<td class="diff-line-num new_line" data-linenumber="3443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3443
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<pre style="margin: 0;"> <span id="LC3443" class="line" lang="diff"> f.close()</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3438,7 +3446,7 @@ Description: Py3 compatability courtesy of 2to3 + QT5</td>
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3438
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3446
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<pre style="margin: 0;"> <span id="LC3446" class="line" lang="diff"> writeGML = classmethod(writeGML)</span>
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<td class="diff-line-num old_line" data-linenumber="3439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3439
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3447
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<pre style="margin: 0;"> <span id="LC3447" class="line" lang="diff"> </span>
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3440
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3448
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<pre style="margin: 0;"> <span id="LC3448" class="line" lang="diff"> def writeENGML(self,fobj,tree):</span>
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3441
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<pre style="margin: 0;">-<span id="LC3441" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -72,10 +6<span class="idiff left right">8</span>,10 @@</span></span>
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3449
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<pre style="margin: 0;">+<span id="LC3449" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -72,10 +6<span class="idiff left right">6</span>,10 @@</span></span>
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3442
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3450
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<pre style="margin: 0;"> <span id="LC3450" class="line" lang="diff"> f=fobj</span>
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3443
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3451
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<pre style="margin: 0;"> <span id="LC3451" class="line" lang="diff"> #Create dictionary of node IDs, and eliminate possible node duplicates.</span>
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3444
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3452
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<pre style="margin: 0;"> <span id="LC3452" class="line" lang="diff"> nodes = dict([(i[1],n) for n,i in enumerate(tree)])</span>
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