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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/htsjdk">Debian Med / htsjdk</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/htsjdk/commit/e459159d6649753c73cc22b2873620dd2ca30f33">e459159d</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-03-01T22:04:48Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Disabled the java/htsjdk/samtools/util/HttpUtilsTest test, requires network access
</pre>
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<strong><a href="https://salsa.debian.org/med-team/htsjdk/commit/ece5838ca4f2de7dea357cdef51423aec07c7e79">ece5838c</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-03-01T22:05:04Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#13fb0bb1aa5d78fa021dfaa9243e128b23b68753">
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+
debian/patches/disable-network-tests.diff
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/htsjdk/compare/aee39987d0402ad208a29961e4afafb6d7a8610d...ece5838ca4f2de7dea357cdef51423aec07c7e79#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">htsjdk (2.18.2+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Matthias Klose ]</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Disabled the java/htsjdk/samtools/util/HttpUtilsTest test,</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> requires network access.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Closes: #923539</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 01 Mar 2019 23:04:57 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">htsjdk (2.18.2+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * New upstream version</span>
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<li id="13fb0bb1aa5d78fa021dfaa9243e128b23b68753">
<a href="https://salsa.debian.org/med-team/htsjdk/compare/aee39987d0402ad208a29961e4afafb6d7a8610d...ece5838ca4f2de7dea357cdef51423aec07c7e79#13fb0bb1aa5d78fa021dfaa9243e128b23b68753"><strong>debian/patches/disable-network-tests.diff</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Matthias Klose <doko@debian.org></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: Fri, 1 Mar 2019 18:06:32 +0100</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/923539</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Description: Ignore test that accesses the network during the build</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/test/java/htsjdk/samtools/util/HttpUtilsTest.java</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ /dev/null</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,33 +0,0 @@</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-package htsjdk.samtools.util;</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import java.io.IOException;</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import java.net.URL;</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import org.testng.Assert;</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import org.testng.annotations.DataProvider;</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import org.testng.annotations.Test;</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-import htsjdk.HtsjdkTest;</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-public class HttpUtilsTest extends HtsjdkTest {</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @DataProvider(name = "existing_urls")</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- public Object[][] testExistingURLsData() {</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- return new Object[][]{</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {"http://broadinstitute.github.io/picard/testdata/index_test.bam"},</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- {"http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/current.tree"}</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- };</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @Test(dataProvider="existing_urls")</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- public void testGetHeaderField(final String url) throws IOException {</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- final String field = HttpUtils.getHeaderField(new URL(url), "Content-Length");</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Assert.assertNotNull(field);</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- final long length = Long.parseLong(field);</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Assert.assertTrue(length > 0L);</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @Test(dataProvider="existing_urls")</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- public void testGetETag(final String url) throws IOException {</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- final String field = HttpUtils.getETag(new URL(url));</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Assert.assertNotNull(field);</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- }</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-}</span></span></pre>
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<a href="https://salsa.debian.org/med-team/htsjdk/compare/aee39987d0402ad208a29961e4afafb6d7a8610d...ece5838ca4f2de7dea357cdef51423aec07c7e79#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,3 +11,4 @@</td>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">92-disable-testhttp.patch</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">100-fix-java11</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">110-debian-lib-version.patch</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">disable-network-tests.diff</span></pre>
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