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<h3>
Andrius Merkys pushed to branch master
at <a href="https://salsa.debian.org/med-team/hhsuite">Debian Med / hhsuite</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hhsuite/commit/e6febd48b78a780404066985049a1bf53da6e84a">e6febd48</a></strong>
<div>
<span>by Andrius Merkys</span>
<i>at 2019-03-10T09:53:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revoking executable permission from Perl modules.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hhsuite/commit/8dccef38470b99bd99aaaac57243212939c2f109">8dccef38</a></strong>
<div>
<span>by Andrius Merkys</span>
<i>at 2019-03-10T09:55:35Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating debian/changelog.
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#f75bbb64564f456d564b2727bfe56731c592359b">
debian/hhsuite.install
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/hhsuite/compare/27e34bf7f7e5850fb280fb7e23da4fda70f88bde...8dccef38470b99bd99aaaac57243212939c2f109#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">hhsuite (3.1.0-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Team upload.</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * New upstream release.</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> "Added hhsearch_omp, hhsearch_mpi, hhalign_omp and haling_mpi binaries</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +13,10 @@ hhsuite (3.1.0-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> https://github.com/soedinglab/hh-suite/wiki</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Removed '-march=native'</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Thu, 28 Feb 2019 08:16:48 -0600</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> [ Andrius Merkys ]</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> * Revoking executable permission from Perl modules.</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> -- Andrius Merkys <andrius.merkys@gmail.com> Sun, 10 Mar 2019 05:55:13 -0400</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">hhsuite (3.0~beta3+dfsg-3) unstable; urgency=high</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<li id="f75bbb64564f456d564b2727bfe56731c592359b">
<a href="https://salsa.debian.org/med-team/hhsuite/compare/27e34bf7f7e5850fb280fb7e23da4fda70f88bde...8dccef38470b99bd99aaaac57243212939c2f109#f75bbb64564f456d564b2727bfe56731c592359b"><strong>debian/hhsuite.install</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">hh</span><span class="o" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cstranslate</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">hhsuite</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">data</span><span class="o" style="font-weight: 600;">/</span><span class="nx">do_not_delete</span><span class="o" style="font-weight: 600;">*</span> <span class="o" style="font-weight: 600;"><span class="idiff left right">/</span></span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">hhsuite</span><span class="o" style="font-weight: 600;">/</span><span class="nx">data</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">data</span><span class="o" style="font-weight: 600;">/</span><span class="nx">do_not_delete</span><span class="o" style="font-weight: 600;">*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">hhsuite</span><span class="o" style="font-weight: 600;">/</span><span class="nx">data</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">scripts</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">hhsuite</span></span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/hhsuite/compare/27e34bf7f7e5850fb280fb7e23da4fda70f88bde...8dccef38470b99bd99aaaac57243212939c2f109#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,5 +37,9 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> dh_auto_build -- NO_PNG=1</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> chmod -x debian/hhsuite/usr/share/hhsuite/scripts/*.pm</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> dh $@ --builddirectory=mybuild</span></pre>
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