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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/galaxy-lib">Debian Med / galaxy-lib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/commit/5fb26896e7bfdbf136bb0e34f7d403fe64b2de98">5fb26896</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-03-10T07:40:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">drop python2 package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/galaxy-lib/commit/802344d6c9869f015bab0740aa1b73d8c0f40096">802344d6</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-03-10T10:05:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">run tests, ship docs
</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#9d9aaaac3f06acf1a05e3b67781afe64b64a22f7">
<span class="new-file">
+
debian/doc-base
</span>
</a>
</li>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/python3-galaxy-lib.docs
→
debian/docs
</a>
</li>
<li class="file-stats">
<a href="#e2ac4d4f3a3da42fcd3b2f69c27ec0f4a3b01274">
<span class="new-file">
+
debian/patches/remove_badges
</span>
</a>
</li>
<li class="file-stats">
<a href="#240e12610ff0d6626ec32fb7e5034f1a5cb0cca2">
<span class="new-file">
+
debian/patches/repro
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<span class="new-file">
+
debian/patches/series
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/galaxy-lib/compare/ca0abb70c85b96fda6634f8dfd8a27d1fc0403ac...802344d6c9869f015bab0740aa1b73d8c0f40096#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,41 +7,30 @@ Testsuite: autopkgtest-pkg-python</td>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper (>= 12~),</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dh-python,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> python-all,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> python-docutils,</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> python-setuptools,</span>
</pre>
</td>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> python-six (>= 1.9.0),</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> python-yaml,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python3-all,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3-docutils,</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
17
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> python3-setuptools,</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> python3-six (>= 1.9.0),</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> python3-yaml</span>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> python3-yaml,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> python3-markupsafe,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> python3-packaging,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> python3-boltons,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> python3-unittest2,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> python3-nose,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
20
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> python3-sphinx,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> python3-recommonmark,</span>
</pre>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> python3-sphinx-rtd-theme</span>
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20
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Standards-Version: 4.3.0</span>
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21
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/galaxy-lib</span>
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22
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/galaxy-lib.git</span>
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23
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Homepage: https://github.com/galaxyproject/galaxy-lib</span>
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24
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">Package: python-galaxy-lib</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">Architecture: all</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> ${python:Depends}</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext">Recommends: ${python:Recommends}</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">Suggests: ${python:Suggests}</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext">Description: Subset of Galaxy workflow platform's core code base - Python 2.X</span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> A small subset of the Galaxy project for reuse outside the core.</span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> The Galaxy software framework enables researchers without informatics</span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> expertise to perform computational analyses through the web. A user interacts</span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> with Galaxy through the web by uploading and analyzing the data. Galaxy</span>
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36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> interacts with underlying computational infrastructure (servers that run the</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> analyses and disks that store the data) without exposing it to the user.</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> This is the Python 2.x version.</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Package: python3-galaxy-lib</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> ${python3:Depends}</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> ${python3:Depends},</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> ${sphinxdoc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Built-Using: ${sphinxdoc:Built-Using}</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Recommends: ${python3:Recommends}</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Suggests: ${python3:Suggests}</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext">Description: Subset of Galaxy core code base designed to be used</span>
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<a href="https://salsa.debian.org/med-team/galaxy-lib/compare/ca0abb70c85b96fda6634f8dfd8a27d1fc0403ac...802344d6c9869f015bab0740aa1b73d8c0f40096#9d9aaaac3f06acf1a05e3b67781afe64b64a22f7"><strong>debian/doc-base</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Document: galaxy-lib</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Title: Galaxy-Lib Documentation</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Author: Galaxy Project and Community</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Abstract: A small subset of the Galaxy project for reuse outside the core. This</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> subset has minimal dependencies and should be Python 3 compatible.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Section: Programming/Python</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Format: html</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Index: /usr/share/doc/python3-galaxy-lib/html/index.html</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/python3-galaxy-lib/html/*</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span></pre>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">README.rst</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">build/html</span></pre>
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<a href="https://salsa.debian.org/med-team/galaxy-lib/compare/ca0abb70c85b96fda6634f8dfd8a27d1fc0403ac...802344d6c9869f015bab0740aa1b73d8c0f40096#e2ac4d4f3a3da42fcd3b2f69c27ec0f4a3b01274"><strong>debian/patches/remove_badges</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Michael R. Crusoe <michael.crusoe@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Description: Respect user privacy and don't include remote images</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Forwarded: not applicable</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- galaxy-lib.orig/README.rst</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ galaxy-lib/README.rst</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,14 +1,3 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://readthedocs.org/projects/galaxy-lib/badge/?version=latest</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- :target: http://galaxy-lib.readthedocs.io/en/latest/?badge=latest</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- :alt: Documentation Status</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://badge.fury.io/py/galaxy-lib.svg</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- :target: https://pypi.python.org/pypi/galaxy-lib/</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://travis-ci.org/galaxyproject/galaxy-lib.png?branch=master</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- :target: https://travis-ci.org/galaxyproject/galaxy-lib</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> Overview</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> --------</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> </span></pre>
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<li id="240e12610ff0d6626ec32fb7e5034f1a5cb0cca2">
<a href="https://salsa.debian.org/med-team/galaxy-lib/compare/ca0abb70c85b96fda6634f8dfd8a27d1fc0403ac...802344d6c9869f015bab0740aa1b73d8c0f40096#240e12610ff0d6626ec32fb7e5034f1a5cb0cca2"><strong>debian/patches/repro</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">From: Michael R. Crusoe <michael.crusoe@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Subject: keep environment variables out of generated docs</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- galaxy-lib.orig/galaxy/tools/verify/test_data.py</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ galaxy-lib/galaxy/tools/verify/test_data.py</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -28,7 +28,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> class TestDataResolver(object):</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- def __init__(self, file_dirs=None, env_var='GALAXY_TEST_FILE_DIR', environ=os.environ):</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ def __init__(self, file_dirs=None, env_var='GALAXY_TEST_FILE_DIR', environ=None):</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if environ is None:</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ environ = os.environ</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> if file_dirs is None:</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> file_dirs = environ.get(env_var, None)</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> if file_dirs is None:</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- galaxy-lib.orig/galaxy/util/__init__.py</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ galaxy-lib/galaxy/util/__init__.py</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1527,7 +1527,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> return os.path.abspath(galaxy_root_path)</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-def config_directories_from_setting(directories_setting, galaxy_root=galaxy_root_path):</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+def config_directories_from_setting(directories_setting, galaxy_root=None):</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> Parse the ``directories_setting`` into a list of relative or absolute</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> filesystem paths that will be searched to discover plugins.</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1541,6 +1541,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> :rtype: list of strings</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> :returns: list of filesystem paths</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if galaxy_root is None:</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ galaxy_root = galaxy_root_path</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> directories = []</span>
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<td class="diff-line-num new new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> if not directories_setting:</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> return directories</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/galaxy-lib/compare/ca0abb70c85b96fda6634f8dfd8a27d1fc0403ac...802344d6c9869f015bab0740aa1b73d8c0f40096#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">repro</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">remove_badges</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/galaxy-lib/compare/ca0abb70c85b96fda6634f8dfd8a27d1fc0403ac...802344d6c9869f015bab0740aa1b73d8c0f40096#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#! /usr/bin/make -f</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">export PYBUILD_NAME=galaxy-lib</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">export PYBUILD_DISABLE=test</span>
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5
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">export PYBUILD_AFTER_INSTALL_python2=rm -rf {destdir}/usr/bin/</span>
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6
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">%:</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> dh $@ --with python2,python3 --buildsystem=pybuild</span></pre>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> dh $@ --with python3,sphinxdoc --buildsystem=pybuild</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">override_dh_auto_build:</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dh_auto_build</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> PYTHONPATH=. http_proxy='http://127.0.0.1:9/' python3 -m sphinx -N -E -bhtml docs build/html</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">override_dh_auto_install:</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dh_auto_install</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> rm -Rf debian/python3-galaxy-lib/usr/bin # remove later if users request them</span></pre>
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