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<h3>
Andrius Merkys pushed to branch master
at <a href="https://salsa.debian.org/med-team/hmmer">Debian Med / hmmer</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hmmer/commit/034c5284088694e0e955ff1229d61998b4c962fb">034c5284</a></strong>
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<span>by Andrius Merkys</span>
<i>at 2019-03-13T15:05:41Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Detecting failed autopkgtest.
</pre>
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<strong><a href="https://salsa.debian.org/med-team/hmmer/commit/7abaadefcb8580b5aaf0081795f111a4b3302dc2">7abaadef</a></strong>
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<span>by Andrius Merkys</span>
<i>at 2019-03-13T15:06:26Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updating changelog.
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<h4>2 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/hmmer/compare/0af8e7147ff8988ea7a30880eb5af23e6fd0139f...7abaadefcb8580b5aaf0081795f111a4b3302dc2#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">hmmer (3.2.1+dfsg-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Jelmer Vernooij ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Trim trailing whitespace.</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- Jelmer Vernooij <jelmer@debian.org> Wed, 17 Oct 2018 22:30:33 +0000</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> [ Hervé Ménager ]</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * correct HMMER ref</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> [ Andrius Merkys ]</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Detecting failed autopkgtest.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andrius Merkys <andrius.merkys@gmail.com> Wed, 13 Mar 2019 11:06:20 -0400</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">hmmer (3.2.1+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/hmmer/compare/0af8e7147ff8988ea7a30880eb5af23e6fd0139f...7abaadefcb8580b5aaf0081795f111a4b3302dc2#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,11 +16,28 @@ find . -name "*.gz" -exec gunzip \{\} \;</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">chmod</span> <span class="nt" style="color: navy;">-R</span> +x <span class="nb" style="color: #0086b3;">.</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo </span>easel testsuite</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"><span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span>/easel/devkit/sqc 2 ./easel/testsuite/testsuite.sqc ./easel ./easel/</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span>/easel/devkit/sqc 2 ./easel/testsuite/testsuite.sqc ./easel ./easel/ <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"> | <span class="nb" style="color: #0086b3;">tee</span> <span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span>/easel.log</span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell"></span>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo </span>hmmer testsuite</span>
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22
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell">find /usr/bin <span class="nt" style="color: navy;">-name</span> <span class="s2" style="color: #d14;">"*hmm*"</span> <span class="nt" style="color: navy;">-exec</span> <span class="nb" style="color: #0086b3;">ln</span> <span class="nt" style="color: navy;">-s</span> <span class="se" style="color: #d14;">\{\}</span> src <span class="se" style="color: #d14;">\;</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell">./testsuite/../easel/devkit/sqc 2 ./testsuite/testsuite.sqc <span class="nb" style="color: #0086b3;">.</span> ./testsuite/..</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell">./testsuite/../easel/devkit/sqc 2 ./testsuite/testsuite.sqc <span class="nb" style="color: #0086b3;">.</span> ./testsuite/.. <span class="se" style="color: #d14;">\</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"> | <span class="nb" style="color: #0086b3;">tee</span> <span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span>/hmmer.log</span>
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24
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nv" style="color: teal;">$top_builddir</span></span>
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"PASS"</span></span></pre>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"><span class="nv" style="color: teal;">STATUS</span><span class="o" style="font-weight: 600;">=</span>0</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>TEST <span class="k" style="font-weight: 600;">in </span>easel hmmer</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"><span class="k" style="font-weight: 600;"> if </span><span class="nb" style="color: #0086b3;">tail</span> <span class="nt" style="color: navy;">-n</span> 6 <span class="nv" style="color: teal;">$AUTOPKGTEST_TMP</span>/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">TEST</span><span class="k" style="font-weight: 600;">}</span>.log <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell"> | <span class="nb" style="color: #0086b3;">head</span> <span class="nt" style="color: navy;">-n</span> 1 <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="shell"> | <span class="nb" style="color: #0086b3;">grep</span> <span class="nt" style="color: navy;">-q</span> FAILED</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="shell"> <span class="k" style="font-weight: 600;">then</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">TEST</span><span class="k" style="font-weight: 600;">}</span> testsuite FAILED</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="shell"> <span class="nv" style="color: teal;">STATUS</span><span class="o" style="font-weight: 600;">=</span>1</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="shell"> <span class="k" style="font-weight: 600;">else</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">TEST</span><span class="k" style="font-weight: 600;">}</span> testsuite PASS</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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<td class="diff-line-num new old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="shell"></span>
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<td class="diff-line-num new old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="shell"><span class="nb" style="color: #0086b3;">exit</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">STATUS</span><span class="k" style="font-weight: 600;">}</span></span></pre>
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